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Journal Articles
- 2021
[j10]Robert W. Gregg
, Fathima Shabnam, Jason E. Shoemaker:
Agent-based modeling reveals benefits of heterogeneous and stochastic cell populations during cGAS-mediated IFNβ production. Bioinform. 37(10): 1428-1434 (2021)- [j9]Heeju Noh, Ziyi Hua, Panagiotis Chrysinas, Jason E. Shoemaker, Rudiyanto Gunawan:
DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks. BMC Bioinform. 22(1): 108 (2021) - [j8]Josua Aponte-Serrano, Jordan J. A. Weaver, T. J. Sego, James A. Glazier, Jason E. Shoemaker:
Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics. PLoS Comput. Biol. 17(10) (2021) - 2019
- [j7]Emily E. Ackerman, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker:
A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery. BMC Bioinform. 20(1): 297:1-297:13 (2019) - 2013
- [j6]Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka:
A comprehensive map of the influenza A virus replication cycle. BMC Syst. Biol. 7: 97 (2013) - [j5]Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro:
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. PLoS Comput. Biol. 9(1) (2013) - 2012
- [j4]Jason E. Shoemaker, Satoshi Fukuyama, Amie J. Eisfeld, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Yukiko Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka:
Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs. BMC Syst. Biol. 6: 117 (2012) - 2011
- [j3]Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano:
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases. Bioinform. 27(17): 2414-2421 (2011) - 2010
- [j2]Jason E. Shoemaker, Kalyan Gayen, Natàlia Garcia-Reyero, Edward J. Perkins, Daniel L. Villeneuve, Li Liu, Francis J. Doyle:
Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk. BMC Syst. Biol. 4: 89 (2010) - [j1]Camilla Luni, Jason E. Shoemaker, Kevin R. Sanft, Linda R. Petzold, Francis J. Doyle III:
Confidence from uncertainty - A multi-target drug screening method from robust control theory. BMC Syst. Biol. 4: 161 (2010)
Parts in Books or Collections
- 2009
- [p1]Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III:
Automatic Control in Systems Biology. Handbook of Automation 2009: 1335-1360
Coauthor Index
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