Richard H. Scheuermann

Brett E. Pickett, Eva L. Sadat, Yun Zhang, Jyothi Noronha, Burke Squires, Victoria Hunt, Mengya Liu, Sanjeev Kumar, Sam Zaremba, Zhiping Gu, Liwei Zhou, Christopher N. Larson, Jonathan Dietrich, Edward B. Klem, Richard H. Scheuermann: ViPR: an open bioinformatics database and analysis resource for virology research. Nucleic Acids Research 40(Database-Issue): 593-598 (2012)

Philippe Rocca-Serra, Alan Ruttenberg, Martin J. O'Connor, Patricia L. Whetzel, Daniel Schober, Jay Greenbaum, Mélanie Courtot, Ryan R. Brinkman, Susanna-Assunta Sansone, Richard H. Scheuermann, Bjoern Peters: Overcoming the ontology enrichment bottleneck with Quick Term Templates. Applied Ontology 6(1): 13-22 (2011)

Barry Smith, Richard H. Scheuermann: Ontologies for clinical and translational research: Introduction. Journal of Biomedical Informatics 44(1): 3-7 (2011)

Y. Megan Kong, Carl Dahlke, Qun Xiang, Yu Qian, David R. Karp, Richard H. Scheuermann: Toward an ontology-based framework for clinical research databases. Journal of Biomedical Informatics 44(1): 48-58 (2011)

Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall: Hematopoietic cell types: Prototype for a revised cell ontology. Journal of Biomedical Informatics 44(1): 75-79 (2011)

Song Zhang, Jing Cao, Y. Megan Kong, Richard H. Scheuermann: GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach. Bioinformatics 26(7): 905-911 (2010)

Roger L. Chang, Feng Luo, Stuart Johnson, Richard H. Scheuermann: Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks. IJBRA 6(2): 101-119 (2010)

Zhongxue Chen, Monnie McGee, Qingzhong Liu, Y. Megan Kong, Xudong Huang, Jack Y. Yang, Richard H. Scheuermann: Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays. I. J. Computational Biology and Drug Design 3(3): 237-257 (2010)

Glenys Thomson, Nishanth Marthandan, Jill A. Hollenbach, Steven J. Mack, Henry A. Erlich, Richard M. Single, Matthew J. Waller, Steven G. E. Marsh, Paula A. Guidry, David R. Karp, Richard H. Scheuermann, Susan D. Thompson, David N. Glass, Wolfgang Helmberg: Sequence Feature Variant Type (SFVT) Analysis of the HLA Genetic Association in Juvenile Idiopathic Arthritis. Pacific Symposium on Biocomputing 2010: 359-370

Feng Luo, Bo Li, Xiu-Feng Wan, Richard H. Scheuermann: Core and periphery structures in protein interaction networks. BMC Bioinformatics 10(S-4) (2009)

Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell: An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinformatics 10 (2009)

Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan R. Brinkman: FuGEFlow: data model and markup language for flow cytometry. BMC Bioinformatics 10 (2009)

Burke Squires, Catherine Macken, Adolfo Garcia-Sastre, Shubhada Godbole, Jyothi Noronha, Victoria Hunt, Roger L. Chang, Christopher N. Larsen, Edward B. Klem, Kevin Biersack, Richard H. Scheuermann: BioHealthBase: informatics support in the elucidation of influenza virus host-pathogen interactions and virulence. Nucleic Acids Research 36(Database-Issue): 497-503 (2008)

Thomas Grindinger, Feng Luo, Xiu-Feng Wan, Richard H. Scheuermann: Exploring Core/Periphery Structures in Protein Interaction Networks Provides Structure-Property Relation Insights. BIBM 2008: 179-186

Feng Luo, Yunfeng Yang, Chin-Fu Chen, Roger L. Chang, Jizhong Zhou, Richard H. Scheuermann: Modular organization of protein interaction networks. Bioinformatics 23(2): 207-214 (2007)

Zhongxue Chen, Monnie McGee, Qingzhong Liu, Richard H. Scheuermann: A distribution free summarization method for Affymetrix GeneChip^® arrays. Bioinformatics 23(3): 321-327 (2007)

Alexander D. Diehl, Jamie A. Lee, Richard H. Scheuermann, Judith A. Blake: Ontology development for biological systems: immunology. Bioinformatics 23(7): 913-915 (2007)

Feng Luo, Yunfeng Yang, Chin-Fu Chen, Roger L. Chang, Jizhong Zhou, Richard H. Scheuermann: Modular organization of protein interaction networks. Bioinformatics 23(7): 916 (2007)

Jamie A. Lee, Robert S. Sinkovits, Dennis Mock, Eva L. Rab, Jennifer Cai, Peng Yang, Brian Saunders, Robert C. Hsueh, Sangdun Choi, Shankar Subramaniam, Richard H. Scheuermann: Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. BMC Bioinformatics 7: 237 (2006)

Feng Luo, Richard H. Scheuermann: Detecting Functional Modules from Protein Interaction Networks. IMSCCS (1) 2006: 123-130