Raheleh Salari

Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou: Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. RECOMB 2013: 249-263

Raheleh Salari, Damian Wójtowicz, Jie Zheng, David Levens, Yitzhak Pilpel, Teresa M. Przytycka: Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression. PLoS Computational Biology 8(8) (2012)

Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka: Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies. RECOMB 2012: 241-243

Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp: Fast prediction of RNA-RNA interaction. Algorithms for Molecular Biology 5: 5 (2010)

Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp: Sparsification of RNA structure prediction including pseudoknots. Algorithms for Molecular Biology 5: 39 (2010)

Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander Schönhuth, Martin Ester: Inferring cancer subnetwork markers using density-constrained biclustering. Bioinformatics 26(18) (2010)

Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp: Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length. Journal of Computational Biology 17(1): 1-20 (2010)

Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp: Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets. Journal of Computational Biology 17(5): 669-684 (2010)

Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen: Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. RECOMB 2010: 473-490

Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp: Sparsification of RNA Structure Prediction Including Pseudoknots. WABI 2010: 40-51

Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp: Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. WABI 2010: 350-361

Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen: A partition function algorithm for interacting nucleic acid strands. Bioinformatics 25(12) (2009)

Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov: The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study. Journal of Computational Biology 16(2): 159-167 (2009)

Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp: Fast Prediction of RNA-RNA Interaction. WABI 2009: 261-272

Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp: The Relation between Indel Length and Functional Divergence: A Formal Study. WABI 2008: 330-341

Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp: taveRNA: a web suite for RNA algorithms and applications. Nucleic Acids Research 35(Web-Server-Issue): 325-329 (2007)