Andrey Rzhetsky

Jacob G. Foster, Andrey Rzhetsky, James A. Evans: Tradition and Innovation in Scientists' Research Strategies. CoRR abs/1302.6906 (2013)

Lixia Yao, Anna Divoli, Ilya Mayzus, James A. Evans, Andrey Rzhetsky: Benchmarking Ontologies: Bigger or Better? PLoS Computational Biology 7(1) (2011)

Andrey Rzhetsky, James A. Evans: War of Ontology Worlds: Mathematics, Computer Code, or Esperanto? PLoS Computational Biology 7(9) (2011)

Anna Divoli, Eneida A. Mendonça, James A. Evans, Andrey Rzhetsky: Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis. PLoS Computational Biology 7(10) (2011)

Andrey Rzhetsky: Understanding Etiology of Complex Neurodevelopmental Disorders: Two Approaches. AIME 2011: 1

Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky: A distributed look-up architecture for text mining applications using mapreduce. HPDC 2011: 279-280

Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky: A distributed look-up architecture for text mining applications using MapReduce. SC 2011: 59

Robert Grossman, Andrey Rzhetsky, Sun Kim, Wei Wang (Eds.): ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, USA - July 31 - August 03, 2011. ACM 2011, isbn 978-1-4503-0796-3

Sonjia Waxmonsky, John Goldsmith, Andrey Rzhetsky: Discovering and Counting Biomedical Verbs. ICMLA 2010: 975-978

Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur: How to Get the Most out of Your Curation Effort. PLoS Computational Biology 5(5) (2009)

Andrey Rzhetsky, Michael R. Seringhaus, Mark B. Gerstein: Getting Started in Text Mining: Part Two. PLoS Computational Biology 5(7) (2009)

Ivan Iossifov, Raul Rodriguez-Esteban, Ilya Mayzus, Kathleen J. Millen, Andrey Rzhetsky: Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Computational Biology 5(11) (2009)

Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur: Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinformatics 24(18): 2086-2093 (2008)

Lixia Yao, Andrey Rzhetsky: Quantitative systems-level determinants of drug targets. BMC Bioinformatics 9(S-10) (2008)

W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay: New directions in biomedical text annotation: definitions, guidelines and corpus construction. BMC Bioinformatics 7: 356 (2006)

Raul Rodriguez-Esteban, Ivan Iossifov, Andrey Rzhetsky: Imitating Manual Curation of Text-Mined Facts in Biomedicine. PLoS Computational Biology 2(9) (2006)

Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman: The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. Bioinformatics 21(S3): 1 (2005)

Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky: Probabilistic inference of molecular networks from noisy data sources. Bioinformatics 20(8): 1205-1213 (2004)

Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur: GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. Journal of Biomedical Informatics 37(1): 43-53 (2004)

Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky: Learning to predict protein-protein interactions from protein sequences. Bioinformatics 19(15): 1875-1881 (2003)

Carol Friedman, Pauline Kra, Andrey Rzhetsky: Two biomedical sublanguages: a description based on the theories of Zellig Harris. Journal of Biomedical Informatics 35(4): 222-235 (2002)

Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W. John Wilbur: Automatically identifying gene/protein terms in MEDLINE abstracts. Journal of Biomedical Informatics 35(5-6): 322-330 (2002)

Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky: Of truth and pathways: chasing bits of information through myriads of articles. ISMB 2002: 249-257

Shawn M. Gomez, Andrey Rzhetsky: Towards the Prediction of Complete Protein-Protein Interaction Networks. Pacific Symposium on Biocomputing 2002: 413-424

Andrey Rzhetsky, Shawn M. Gomez: Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Bioinformatics 17(10): 988-996 (2001)

Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Steven B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman: GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5

Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky: GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. ISMB (Supplement of Bioinformatics) 2001: 74-82

Vasileios Hatzivassiloglou, Pablo Ariel Duboué, Andrey Rzhetsky: Disambiguating proteins, genes, and RNA in text: a machine learning approach. ISMB (Supplement of Bioinformatics) 2001: 97-106

Andrey Rzhetsky, Pavel Morozov: Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate Variation in Proteins. Pacific Symposium on Biocomputing 2001: 203-214

Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman: A knowledge model for analysis and simulation of regulatory networks. Bioinformatics 16(12): 1120-1128 (2000)

Andrey Rzhetsky, Masatoshi Nei: METREE: a program package for inferring and testing minimum-evolution trees. Computer Applications in the Biosciences 10(4): 409-412 (1994)