Joel S. Rozowsky

Lukas Habegger, Suganthi Balasubramanian, David Z. Chen, Ekta Khurana, Andrea Sboner, Arif Harmanci, Joel S. Rozowsky, Declan Clarke, Michael Snyder, Mark Gerstein: VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment. Bioinformatics 28(17): 2267-2269 (2012)

Lukas Habegger, Andrea Sboner, Tara A. Gianoulis, Joel S. Rozowsky, Ashish Agarwal, Michael Snyder, Mark Gerstein: RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. Bioinformatics 27(2): 281-283 (2011)

Justin Jee, Joel S. Rozowsky, Kevin Y. Yip, Lucas Lochovsky, Robert D. Bjornson, Guoneng Zhong, Zhengdong D. Zhang, Yutao Fu, Jie Wang, Zhiping Weng, Mark Gerstein: ACT: aggregation and correlation toolbox for analyses of genome tracks. Bioinformatics 27(8): 1152-1154 (2011)

Alexander Karpikov, Joel S. Rozowsky, Mark Gerstein: Tiling array data analysis: a multiscale approach using wavelets. BMC Bioinformatics 12: 57 (2011)

Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein: Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. PLoS Computational Biology 7(11) (2011)

Zhengdong D. Zhang, Joel S. Rozowsky, Michael Snyder, Joseph T. Chang, Mark Gerstein: Modeling ChIP Sequencing In Silico with Applications. PLoS Computational Biology 4(8) (2008)

Thomas E. Royce, Joel S. Rozowsky, Mark Gerstein: Assessing the need for sequence-based normalization in tiling microarray experiments. Bioinformatics 23(8): 988-997 (2007)

Jiang Du, Joel S. Rozowsky, Jan O. Korbel, Zhengdong D. Zhang, Thomas E. Royce, Martin H. Schultz, Michael Snyder, Mark Gerstein: A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge. Bioinformatics 22(24): 3016-3024 (2006)

Joel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder, Mark Gerstein: Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites. BSB 2005: 28-29