Kristian Rother

Magdalena A. Machnicka, Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz, Kristian Rother, Mark Helm, Janusz M. Bujnicki, Henri Grosjean: MODOMICS: a database of RNA modification pathways - 2013 update. Nucleic Acids Research 41(Database-Issue): 262-267 (2013)

Kaja Milanowska, Katarzyna Mikolajczak, Anna Lukasik, Marcin Skorupski, Zuzanna Balcer, Magdalena A. Machnicka, Martyna Nowacka, Kristian Rother, Janusz M. Bujnicki: RNApathwaysDB - a database of RNA maturation and decay pathways. Nucleic Acids Research 41(Database-Issue): 268-272 (2013)

Jochen Ismer, Alexander Rose, Johanna K. S. Tiemann, Andrean Goede, Kristian Rother, Peter Werner Hildebrand: Voronoia4RNA - a database of atomic packing densities of RNA structures and their complexes. Nucleic Acids Research 41(Database-Issue): 280-284 (2013)

Kristian Rother, Wojciech Potrzebowski, Tomasz Puton, Magdalena Rother, Ewa Wywial, Janusz M. Bujnicki: A toolbox for developing bioinformatics software. Briefings in Bioinformatics 13(2): 244-257 (2012)

Maria Victoria Schneider, Peter Walter, Marie-Claude Blatter, James Watson, Michelle D. Brazas, Kristian Rother, Aidan Budd, Allegra Via, Celia W. G. van Gelder, Joachim Jacob, Pedro Fernandes, Tommi H. Nyrönen, Javier De Las Rivas, Thomas Blicher, Rafael C. Jimenez, Jane Loveland, Jennifer McDowall, Philip Jones, Brendan W. Vaughan, Rodrigo Lopez, Teresa K. Attwood, Catherine Brooksbank: Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. Briefings in Bioinformatics 13(3): 383-389 (2012)

Anna Philips, Kaja Milanowska, Grzegorz Lach, Michal Boniecki, Kristian Rother, Janusz M. Bujnicki: MetalionRNA: computational predictor of metal-binding sites in RNA structures. Bioinformatics 28(2): 198-205 (2012)

Michal J. Pietal, Natalia Szostak, Kristian Rother, Janusz M. Bujnicki: RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures. BMC Bioinformatics 13: 333 (2012)

Kristian Rother: Exit Polls - Instant Feedback from Teaching Events and Conference Talks. BIOINFORMATICS 2012: 395-398

Magdalena Rother, Kristian Rother, Tomasz Puton, Janusz M. Bujnicki: RNA tertiary structure prediction with ModeRNA. Briefings in Bioinformatics 12(6): 601-613 (2011)

Magdalena Rother, Kaja Milanowska, Tomasz Puton, Jaroslaw Jeleniewicz, Kristian Rother, Janusz M. Bujnicki: ModeRNA server: an online tool for modeling RNA 3D structures. Bioinformatics 27(17): 2441-2442 (2011)

Kaja Milanowska, Joanna Krwawicz, Grzegorz Papaj, Jan Kosinski, Katarzyna Poleszak, Justyna Lesiak, Ewelina Osinska, Kristian Rother, Janusz M. Bujnicki: REPAIRtoire - a database of DNA repair pathways. Nucleic Acids Research 39(Database-Issue): 788-792 (2011)

Maria Victoria Schneider, James Watson, Teresa K. Attwood, Kristian Rother, Aidan Budd, Jennifer McDowall, Allegra Via, Pedro Fernandes, Tommi H. Nyrönen, Thomas Blicher, Philip Jones, Marie-Claude Blatter, Javier De Las Rivas, David Phillip Judge, Wouter van der Gool, Catherine Brooksbank: Bioinformatics training: a review of challenges, actions and support requirements. Briefings in Bioinformatics 11(6): 544-551 (2010)

Kristian Rother, Magdalena Rother, Alexandra Pleus, Annette Upmeier zu Belzen: Multi-stage learning aids applied to hands-on software training. Briefings in Bioinformatics 11(6): 582-586 (2010)

Magdalena Musielak, Kristian Rother, Tomasz Puton, Janusz M. Bujnicki: ModeRNA builds RNA 3D Models from Template Structures. ERCIM News 2010(82): 19 (2010)

Raphael André Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz M. Bujnicki, Robert Preissner: Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors. Algorithms 2(2): 692-709 (2009)

Anna Czerwoniec, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Katarzyna H. Kaminska, Joanna M. Kasprzak, Janusz M. Bujnicki, Henri Grosjean, Kristian Rother: MODOMICS: a database of RNA modification pathways, update 2008. Nucleic Acids Research 37(Database-Issue): 118-121 (2009)

Kristian Rother, Peter Werner Hildebrand, Andrean Goede, Bjoern Gruening, Robert Preissner: Voronoia: analyzing packing in protein structures. Nucleic Acids Research 37(Database-Issue): 393-395 (2009)

Stefan Günther, Dorothea Hempel, Mathias Dunkel, Kristian Rother, Robert Preissner: SuperHapten: a comprehensive database for small immunogenic compounds. Nucleic Acids Research 35(Database-Issue): 906-910 (2007)

Kristian Rother, Mathias Dunkel, Elke Michalsky, Silke Trißl, Andrean Goede, Ulf Leser, Robert Preissner: A structural keystone for drug design. J. Integrative Bioinformatics 3(1) (2006)

Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser: Columba: an integrated database of proteins, structures, and annotations. BMC Bioinformatics 6: 81 (2005)

Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser: Columba: Multidimensional Data Integration of Protein Annotations. DILS 2004: 156-171

Kristian Rother, Robert Preissner, Andrean Goede, Cornelius Frömmel: Inhomogeneous molecular density: reference packing densities and distribution of cavities within proteins. Bioinformatics 19(16): 2112-2121 (2003)

Robert Preissner, Andrean Goede, Kristian Rother, F. Osterkamp, U. Koert, Cornelius Frömmel: Matching organic libraries with protein-substructures. Journal of Computer-Aided Molecular Design 15(9): 811-817 (2001)

Christoph Gille, Andrean Goede, Kristian Rother, Robert Preissner, Cornelius Frömmel: Interfaces of Secondary Structural Elements in Proteins - Evolution of Atomic Substructures -. German Conference on Bioinformatics 1999: 196