Daniel R. Ripoll

Daniel R. Ripoll, Ilja V. Khavrutskii, Sidhartha Chaudhury, Jin Liu, Robert A. Kuschner, Anders Wallqvist, Jaques Reifman: Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase. PLoS Computational Biology 8(8) (2012)

Daniel R. Ripoll, Adam Liwo, Harold A. Scheraga: Global Optimization in Protein Folding. Encyclopedia of Optimization 2009: 1392-1411

Harold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova: Evolution of physics-based methodology for exploring the conformational energy landscape of proteins. Journal of Computational Chemistry 23(1): 28-34 (2002)

Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga: UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. RECOMB 2000: 193-200

Timothy J. O'Donnell, Steven Hotovy, Marcia S. Pottle, Daniel R. Ripoll, Harold A. Scheraga: Implementation of ECEPP-Based Programs on the IBM SP2 and the SGI Power Challenge Computers. HPCN Europe 1996: 365-372

Daniel R. Ripoll, Marcia S. Pottle, Kenneth D. Gibson, Harold A. Scheraga, Adam Liwo: Implementation of the ECEPP Algorithm, the Monte Carlo Minimization Method, and the Electrostatically Driven Monte Carlo Method on the Kendall Square Research KSR1 Computer. Journal of Computational Chemistry 16(9): 1153-1163 (1995)

Daniel R. Ripoll, Stephen J. Thomas: A parallel Monte Carlo search algorithm for the conformational analysis of polypeptides. The Journal of Supercomputing 6(2): 163-185 (1992)

Daniel R. Ripoll, Stephen J. Thomas: A parallel Monte Carlo search algorithm for the conformational analysis of proteins. SC 1990: 94-102