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Dietrich Rebholz-Schuhmann
2010 – today
- 2013
[j37]Jörg Hakenberg, Goran Nenadic, Dietrich Rebholz-Schuhmann, Jin-Dong Kim: Literature Mining Solutions for Life Science Research. Adv. Bioinformatics 2013 (2013)- [j36]Samuel Croset, John P. Overington, Dietrich Rebholz-Schuhmann: Brain: biomedical knowledge manipulation. Bioinformatics 29(9): 1238-1239 (2013)
- [j35]Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Antonio Jimeno-Yepes, Ian Lewin: Monitoring named entity recognition: the League Table. J. Biomedical Semantics 4: 19 (2013)
- [c22]Rafael Berlanga Llavori, Antonio Jimeno-Yepes, María Pérez Catalán, Dietrich Rebholz-Schuhmann: Context-Dependent Semantic Annotation in Cross-Lingual Biomedical Resources. CLEF 2013: 120-123
- [c21]Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors: Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. CLEF 2013: 353-367
- [c20]Leyla Jael García Castro, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann, Alexander Garcia: Connections across Scientific Publications based on Semantic Annotations. SePublica 2013: 51-62
- 2012
- [j34]Maria Liakata, Shyamasree Saha, Simon Dobnik, Colin R. Batchelor, Dietrich Rebholz-Schuhmann: Automatic recognition of conceptualization zones in scientific articles and two life science applications. Bioinformatics 28(7): 991-1000 (2012)
- [j33]David Campos, Sérgio Matos, Ian Lewin, José Luís Oliveira, Dietrich Rebholz-Schuhmann: Harmonization of gene/protein annotations: towards a gold standard MEDLINE. Bioinformatics 28(9): 1253-1261 (2012)
- [j32]Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz: Poseidon: An information retrieval and extraction system for metagenomic marine science. Ecological Informatics 12: 10-15 (2012)
- [c19]Nigel Collier, Mai-Vu Tran, Hoang-Quynh Le, Anika Oellrich, Ai Kawazoe, Martin Hall-May, Dietrich Rebholz-Schuhmann: A Hybrid Approach to Finding Phenotype Candidates in Genetic Texts. COLING 2012: 647-662
- [c18]Senay Kafkas, Ian Lewin, David Milward, Erik M. van Mulligen, Jan A. Kors, Udo Hahn, Dietrich Rebholz-Schuhmann: CALBC: Releasing the Final Corpora. LREC 2012: 2923-2926
- [c17]Ian Lewin, Senay Kafkas, Dietrich Rebholz-Schuhmann: Centroids: Gold standards with distributional variation. LREC 2012: 3894-3900
- [e4]Christopher J. O. Baker, Dietrich Rebholz-Schuhmann (Eds.): Proceedings of the Workshop on Annotation, Interpretation and Management of Mutations, Basel, Switzerland, September 9, 2012. CEUR Workshop Proceedings 916, CEUR-WS.org 2012
- 2011
- [j31]Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos: A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinformatics 27(7): 1001-1008 (2011)
- [j30]Paul Thompson, John McNaught, Simonetta Montemagni, Nicoletta Calzolari, Riccardo Del Gratta, Vivian Lee, Simone Marchi, Monica Monachini, Piotr Pezik, Valeria Quochi, C. J. Rupp, Yutaka Sasaki, Giulia Venturi, Dietrich Rebholz-Schuhmann, Sophia Ananiadou: The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinformatics 12: 397 (2011)
- [j29]Johanna R. McEntyre, Sophia Ananiadou, Stephen Andrews, William J. Black, Richard Boulderstone, Paula Buttery, David Chaplin, Sandeepreddy Chevuru, Norman Cobley, Lee-Ann Coleman, Paul Davey, Bharti Gupta, Lesley Haji-Gholam, Craig Hawkins, Alan Horne, Simon J. Hubbard, Jee-Hyub Kim, Ian Lewin, Vic Lyte, Ross MacIntyre, Sami Mansoor, Linda Mason, John McNaught, Elizabeth Newbold, Chikashi Nobata, Ernest Ong, Sharmila Pillai, Dietrich Rebholz-Schuhmann, Heather Rosie, Rob Rowbotham, C. J. Rupp, Peter Stoehr, Philip Vaughan: UKPMC: a full text article resource for the life sciences. Nucleic Acids Research 39(Database-Issue): 58-65 (2011)
- [c16]Ernesto Jiménez-Ruiz, Dietrich Rebholz-Schuhmann, Ian Lewin: Exploitation of Cross-References between Terminological Resources within the CALBC Context. DEXA Workshops 2011: 455-459
- [c15]Amanda Clare, Samuel Croset, Christoph Grabmüller, Senay Kafkas, Maria Liakata, Anika Oellrich, Dietrich Rebholz-Schuhmann: Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications. SePublica 2011
- [c14]Ying Yan, Janna Hastings, Jee-Hyub Kim, Stefan Schulz, Christoph Steinbeck, Dietrich Rebholz-Schuhmann: Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules. ICBO 2011
- 2010
- [j28]Dietrich Rebholz-Schuhmann, Silvestras Kavaliauskas, Piotr Pezik: PaperMaker: validation of biomedical scientific publications. Bioinformatics 26(7): 982-984 (2010)
- [j27]Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann: Interoperability between phenotype and anatomy ontologies. Bioinformatics 26(24): 3112-3118 (2010)
- [j26]Dietrich Rebholz-Schuhmann, Goran Nenadic: Biomedical Semantics: the Hub for Biomedical Research 2.0. J. Biomedical Semantics 1: 1 (2010)
- [j25]Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre: Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinformatics 11: 441 (2010)
- [j24]Senay Kafkas, Ekrem Varoglu, Dietrich Rebholz-Schuhmann, Bahar Taneri: Functional variation of alternative splice forms in their protein interaction networks: a literature mining approach. BMC Bioinformatics 11(S-5): P1 (2010)
- [j23]Antonio Jimeno-Yepes, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann: Ontology refinement for improved information retrieval. Inf. Process. Manage. 46(4): 426-435 (2010)
- [j22]Dietrich Rebholz-Schuhmann, Nigel Collier, Jong C. Park, Limsoon Wong: Wrestling with Biomedical Research Results: Language Resources and Literature Analysis. J. Bioinformatics and Computational Biology 8(1): 129-130 (2010)
- [j21]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter Corbett, Ekaterina Buyko, Elena Beisswanger, Udo Hahn: Calbc Silver Standard Corpus. J. Bioinformatics and Computational Biology 8(1): 163-179 (2010)
- [j20]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Miguel Arregui, Harald Kirsch: Measuring prediction capacity of individual verbs for the identification of protein interactions. Journal of Biomedical Informatics 43(2): 200-207 (2010)
- [c13]Dietrich Rebholz-Schuhmann, Antonio José Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger, Udo Hahn: The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. LREC 2010
- [c12]Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann: Relational Patterns in OWL and Their Application to OBO. OWLED 2010
- [c11]Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann: Applying ontology design patterns to the implementation of relations in GENIA. Semantic Mining in Biomedicine 2010
- [c10]Jung-jae Kim, Dietrich Rebholz-Schuhmann: Improving the extraction of complex regulatory events from scientific text by using ontology-based inference. Semantic Mining in Biomedicine 2010
- [c9]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn: Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010
- [c8]Samuel Croset, Christoph Grabmüller, Chen Li, Silvestras Kavaliauskas, Dietrich Rebholz-Schuhmann: The CALBC RDF Triple Store: Retrieval over Large Literature Content. SWAT4LS 2010
- [c7]Ernesto Jiménez-Ruiz, Bernardo Cuenca Grau, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann: First Steps in the Logic-based Assessment of Post-composed Phenotypic Descriptions. SWAT4LS 2010
- [e3]Nigel Collier, Udo Hahn, Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Sampo Pyysalo (Eds.): Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, Cambridge, United Kingdom, October, 2010. CEUR Workshop Proceedings 714, CEUR-WS.org 2010
- [i2]Samuel Croset, Christoph Grabmüller, Chen Li, Silvestras Kavaliauskas, Dietrich Rebholz-Schuhmann: The CALBC RDF Triple Store: retrieval over large literature content. CoRR abs/1012.1650 (2010)
- [i1]Ernesto Jiménez-Ruiz, Bernardo Cuenca Grau, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann: First steps in the logic-based assessment of post-composed phenotypic descriptions. CoRR abs/1012.1659 (2010)
2000 – 2009
- 2009
- [j19]Dolf Trieschnigg, Piotr Pezik, Vivian Lee, Franciska de Jong, Wessel Kraaij, Dietrich Rebholz-Schuhmann: MeSH Up: effective MeSH text classification for improved document retrieval. Bioinformatics 25(11): 1412-1418 (2009)
- [j18]Dolf Trieschnigg, Piotr Pezik, Vivian Lee, Franciska de Jong, Wessel Kraaij, Dietrich Rebholz-Schuhmann: Response to comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinformatics 25(20): 2772 (2009)
- [j17]Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann: Reuse of terminological resources for efficient ontological engineering in Life Sciences. BMC Bioinformatics 10(S-10): 4 (2009)
- [j16]Christopher J. O. Baker, Dietrich Rebholz-Schuhmann: Between proteins and phenotypes: annotation and interpretation of mutations. BMC Bioinformatics 10(S-8): 0 (2009)
- [j15]Kevin Nagel, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann: Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb. BMC Bioinformatics 10(S-8): 4 (2009)
- [c6]Fabio Rinaldi, Dietrich Rebholz-Schuhmann: Support tools for literature-based information access in molecular biology. IUCS 2009: 273-277
- [c5]Tiago Grego, Piotr Pezik, Francisco M. Couto, Dietrich Rebholz-Schuhmann: Identification of Chemical Entities in Patent Documents. IWANN (2) 2009: 942-949
- 2008
- [j14]Jung-jae Kim, Dietrich Rebholz-Schuhmann: Categorization of services for seeking information in biomedical literature: a typology for improvement of practice. Briefings in Bioinformatics 9(6): 452-465 (2008)
- [j13]Dietrich Rebholz-Schuhmann, Miguel Arregui, Sylvain Gaudan, Harald Kirsch, Antonio Jimeno-Yepes: Text processing through Web services: calling Whatizit. Bioinformatics 24(2): 296-298 (2008)
- [j12]Jung-jae Kim, Piotr Pezik, Dietrich Rebholz-Schuhmann: MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline. Bioinformatics 24(11): 1410-1412 (2008)
- [j11]Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz, Vivian Lee, Sylvain Gaudan, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann: Assessment of disease named entity recognition on a corpus of annotated sentences. BMC Bioinformatics 9(S-3) (2008)
- [j10]Irena Spasic, Daniel Schober, Susanna-Assunta Sansone, Dietrich Rebholz-Schuhmann, Douglas B. Kell, Norman W. Paton: Facilitating the development of controlled vocabularies for metabolomics technologies with text mining. BMC Bioinformatics 9(S-5) (2008)
- [j9]Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich Rebholz-Schuhmann: Integrating protein-protein interactions and text mining for protein function prediction. BMC Bioinformatics 9(S-8) (2008)
- [j8]Sylvain Gaudan, Antonio Jimeno-Yepes, Vivian Lee, Dietrich Rebholz-Schuhmann: Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text. EURASIP J. Bioinformatics and Systems Biology 2008 (2008)
- [c4]Michael Ashburner, Ulf Leser, Dietrich Rebholz-Schuhmann: 08131 Executive Summary -- Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives. Ontologies and Text Mining for Life Sciences 2008
- [c3]Kevin Nagel, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann: Annotation of protein residues based on a literature analysis: cross-validation against UniProtKB. AIMM 2008
- [c2]Elena Beisswanger, Vivian Lee, Jung-jae Kim, Dietrich Rebholz-Schuhmann, Andrea Splendiani, Olivier Dameron, Stefan Schulz, Udo Hahn: Gene Regulation Ontology (GRO): Design Principles and Use Cases. MIE 2008: 9-14
- [c1]Davide Cerri, Emanuele Della Valle, David de Francisco Marcos, Fausto Giunchiglia, Dalit Naor, Lyndon J. B. Nixon, Kia Teymourian, Philipp Obermeier, Dietrich Rebholz-Schuhmann, Reto Krummenacher, Elena Paslaru Bontas Simperl: Towards Knowledge in the Cloud. OTM Workshops 2008: 986-995
- [e2]Michael Ashburner, Ulf Leser, Dietrich Rebholz-Schuhmann (Eds.): Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03. - 28.03.2008. Dagstuhl Seminar Proceedings 08131, Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2008
- [e1]Christopher J. O. Baker, Dietrich Rebholz-Schuhmann (Eds.): Proceedings of the ECCB 2008 Workshop: Annotation, Interpretation and Management of Mutations ( AIMM ) Cagliari, Sardinia, Italy, September, June 22, 2008. CEUR Workshop Proceedings 429, CEUR-WS.org 2008
- 2007
- [j7]Dietrich Rebholz-Schuhmann, Harald Kirsch, Miguel Arregui, Sylvain Gaudan, Mark Riethoven, Peter Stoehr: EBIMed - text crunching to gather facts for proteins from Medline. Bioinformatics 23(2): 237-244 (2007)
- [j6]Dietrich Rebholz-Schuhmann, Graham Cameron, Dominic Clark, Erik M. van Mulligen, Jean-Louis Coatrieux, Eva del Hoyo-Barbolla, Fernando Martín-Sánchez, Luciano Milanesi, Ivan Porro, Francesco Beltrame, Ioannis G. Tollis, Johan van der Lei: SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics. BMC Bioinformatics 8(S-1) (2007)
- [j5]Patrick Ruch, Célia Boyer, Christine Chichester, Imad Tbahriti, Antoine Geissbühler, Paul Fabry, Julien Gobeill, Violaine Pillet, Dietrich Rebholz-Schuhmann, Christian Lovis, Anne-Lise Veuthey: Using argumentation to extract key sentences from biomedical abstracts. I. J. Medical Informatics 76(2-3): 195-200 (2007)
- [j4]Jean-Yves Bansard, Dietrich Rebholz-Schuhmann, Graham Cameron, Dominic Clark, Erik M. van Mulligen, Francesco Beltrame, Eva del Hoyo-Barbolla, Fernando Martín-Sánchez, Luciano Milanesi, Ioannis G. Tollis, Johan van der Lei, Jean-Louis Coatrieux: Medical Informatics and Bioinformatics: A Bibliometric Study. IEEE Transactions on Information Technology in Biomedicine 11(3): 237-243 (2007)
- 2006
- [j3]Jacek Blazewicz, Fred Glover, Marta Kasprzak, Wojciech T. Markiewicz, Ceyda Oguz, Dietrich Rebholz-Schuhmann, Aleksandra Swiercz: Dealing with repetitions in sequencing by hybridization. Computational Biology and Chemistry 30(5): 313-320 (2006)
- [j2]Harald Kirsch, Sylvain Gaudan, Dietrich Rebholz-Schuhmann: Distributed modules for text annotation and IE applied to the biomedical domain. I. J. Medical Informatics 75(6): 496-500 (2006)
- 2005
- [j1]Sylvain Gaudan, Harald Kirsch, Dietrich Rebholz-Schuhmann: Resolving abbreviations to their senses in Medline. Bioinformatics 21(18): 3658-3664 (2005)
Coauthor Index
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last updated on 2013-10-02 11:20 CEST by the dblp team