Teresa M. Przytycka

Dong-Yeon Cho, Teresa M. Przytycka: Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model. RECOMB 2013: 30-31

Jan Hoinka, Elena Zotenko, Adam Friedman, Zuben E. Sauna, Teresa M. Przytycka: Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers. Bioinformatics 28(12): 215-223 (2012)

Raheleh Salari, Damian Wójtowicz, Jie Zheng, David Levens, Yitzhak Pilpel, Teresa M. Przytycka: Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression. PLoS Computational Biology 8(8) (2012)

Min Wu, Chee Keong Kwoh, Teresa M. Przytycka, Jing Li, Jie Zheng: Integration of genomic and epigenomic features to predict meiotic recombination hotspots in human and mouse. BCB 2012: 297-304

Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka: Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies. RECOMB 2012: 241-243

Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka: Identifying Causal Genes and Dysregulated Pathways in Complex Diseases. PLoS Computational Biology 7(3) (2011)

Mark Borodovsky, Teresa M. Przytycka, Sanguthevar Rajasekaran, Alexander Zelikovsky: Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE/ACM Trans. Comput. Biology Bioinform. 8(4): 865-866 (2011)

Min Wu, Chee Keong Kwoh, Teresa M. Przytycka, Jing Li, Jie Zheng: Prediction of Trans-regulators of Recombination Hotspots in Mouse Genome. BIBM 2011: 57-62

Ion I. Mandoiu, Satoru Miyano, Teresa M. Przytycka, Sanguthevar Rajasekaran (Eds.): IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011, Orlando, FL, USA, February 3-5, 2011. IEEE Computer Society 2011, isbn 978-1-61284-851-8

Teresa M. Przytycka, Marie-France Sagot (Eds.): Algorithms in Bioinformatics - 11th International Workshop, WABI 2011, Saarbrücken, Germany, September 5-7, 2011. Proceedings. Lecture Notes in Computer Science 6833, Springer 2011, isbn 978-3-642-23037-0

Teresa M. Przytycka, Mona Singh, Donna K. Slonim: Toward the dynamic interactome: it's about time. Briefings in Bioinformatics 11(1): 15-29 (2010)

Jie Zheng, David Zhang, Pawel F. Przytycki, Rafal Zielinski, Jacek Capala, Teresa M. Przytycka: SimBoolNet - a Cytoscape plugin for dynamic simulation of signaling networks. Bioinformatics 26(1): 141-142 (2010)

Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant: State of the art: refinement of multiple sequence alignments. BMC Bioinformatics 11: 3 (2010)

Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh, Donna K. Slonim: Session Introduction. Pacific Symposium on Biocomputing 2010: 120-122

Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka: Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases. RECOMB 2010: 263-280

Mark Borodovsky, Johann Peter Gogarten, Teresa M. Przytycka, Sanguthevar Rajasekaran (Eds.): Bioinformatics Research and Applications, 6th International Symposium, ISBRA 2010, Storrs, CT, USA, May 23-26, 2010. Proceedings. Lecture Notes in Computer Science 6053, Springer 2010, isbn 978-3-642-13077-9

Yang Huang, Stefan Wuchty, Michael T. Ferdig, Teresa M. Przytycka: Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum. Bioinformatics 25(12) (2009)

Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh: Session Introduction. Pacific Symposium on Biocomputing 2009: 174-177

Katia S. Guimarães, Anna R. Panchenko, Teresa M. Przytycka (Eds.): Advances in Bioinformatics and Computational Biology, 4th Brazilian Symposium on Bioinformatics, BSB 2009, Porto Alegre, Brazil, July 29-31, 2009. Proceedings. Lecture Notes in Computer Science 5676, Springer 2009, isbn 978-3-642-03222-6

Katia S. Guimarães, Teresa M. Przytycka: Interrogating domain-domain interactions with parsimony based approaches. BMC Bioinformatics 9 (2008)

Balaji Raghavachari, Asba Tasneem, Teresa M. Przytycka, Raja Jothi: DOMINE: a database of protein domain interactions. Nucleic Acids Research 36(Database-Issue): 656-661 (2008)

Elena Zotenko, Julián Mestre, Dianne P. O'Leary, Teresa M. Przytycka: Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality. PLoS Computational Biology 4(8) (2008)

Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka: Improving Strand Pairing Prediction through Exploring Folding Cooperativity. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 484-491 (2008)

Teresa M. Przytycka: Maximum Agreement Subtree (of 3 or More Trees). Encyclopedia of Algorithms 2008

Raja Jothi, Teresa M. Przytycka, L. Aravind: Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. BMC Bioinformatics 8 (2007)

Teresa M. Przytycka: Stability of Characters and Construction of Phylogenetic Trees. Journal of Computational Biology 14(5): 539-549 (2007)

Jie Zheng, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka: A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals. RECOMB-CG 2007: 177-191

Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka: Bringing Folding Pathways into Strand Pairing Prediction. WABI 2007: 38-48

Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka: Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations. Algorithms for Molecular Biology 1 (2006)

Raja Jothi, Elena Zotenko, Asba Tasneem, Teresa M. Przytycka: COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations. Bioinformatics 22(7): 779-788 (2006)

Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant: State of the art: refinement of multiple sequence alignments. BMC Bioinformatics 7: 499 (2006)

Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand: Graph Theoretical Insights into Evolution of Multidomain Proteins. Journal of Computational Biology 13(2): 351-363 (2006)

Teresa M. Przytycka: Chordal Graphs in Computational Biology - New Insights and Applications. International Conference on Computational Science (2) 2006: 620-621

Teresa M. Przytycka: An Important Connection Between Network Motifs and Parsimony Models. RECOMB 2006: 321-335

Raja Jothi, Maricel G. Kann, Teresa M. Przytycka: Predicting protein-protein interaction by searching evolutionary tree automorphism space. ISMB (Supplement of Bioinformatics) 2005: 241-250

Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka: Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations. Systems Biology and Regulatory Genomics 2005: 23-38

Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand: Graph Theoretical Insights into Evolution of Multidomain Proteins. RECOMB 2005: 311-325

Teresa M. Przytycka, Yi-Kuo Yu: Scale-free networks versus evolutionary drift. Computational Biology and Chemistry 28(4): 257-264 (2004)

Richard Cole, Martin Farach-Colton, Ramesh Hariharan, Teresa M. Przytycka, Mikkel Thorup: An O(nlog n) Algorithm for the Maximum Agreement Subtree Problem for Binary Trees. SIAM J. Comput. 30(5): 1385-1404 (2000)

S. Rao Kosaraju, Teresa M. Przytycka, Ryan S. Borgstrom: On an Optimal Split Tree Problem. WADS 1999: 157-168

Lawrence L. Larmore, Teresa M. Przytycka: The Optimal Alphabetic Tree Problem Revisited. J. Algorithms 28(1): 1-20 (1998)

Lisa Higham, Teresa M. Przytycka: Asymptotically Optimal Election on Weighted Rings. SIAM J. Comput. 28(2): 720-732 (1998)

Jørgen Bang-Jensen, Mohamed El Haddad, Yannis Manoussakis, Teresa M. Przytycka: Parallel Algorithms for the Hamiltonian Cycle and Hamiltonian Path Problems in Semicomplete Bipartite Digraphs. Algorithmica 17(1): 67-87 (1997)

Teresa M. Przytycka, Józef H. Przytycki: A simple construction of high representativity triangulations. Discrete Mathematics 173(1-3): 209-228 (1997)

Ming-Yang Kao, Tak Wah Lam, Teresa M. Przytycka, Wing-Kin Sung, Hing-Fung Ting: General Techniques for Comparing Unrooted Evolutionary Trees. STOC 1997: 54-65

David G. Kirkpatrick, Teresa M. Przytycka: Parallel Construction of Binary Trees with Near Optimal Weighted Path Lengt. Algorithmica 15(2): 172-192 (1996)

Mike Paterson, Teresa M. Przytycka: On the Complexity of String Folding. Discrete Applied Mathematics 71(1-3): 217-230 (1996)

Lisa Higham, Teresa M. Przytycka: A Simple, Efficient Algorithm for Maximum Finding on Rings. Inf. Process. Lett. 58(6): 319-324 (1996)

Artur Czumaj, Krzysztof Diks, Teresa M. Przytycka: Parallel Maximum Independent Set in Convex Bipartite Graphs. Inf. Process. Lett. 59(6): 289-294 (1996)

Lawrence L. Larmore, Teresa M. Przytycka: A Parallel Algorithm for Optimum Height-Limited Alphabetic Binary Trees. J. Parallel Distrib. Comput. 35(1): 49-56 (1996)

Mike Paterson, Teresa M. Przytycka: On the Complexity of String Folding. ICALP 1996: 658-669

Teresa M. Przytycka, Lisa Higham: Optimal Cost-Sensitive Distributed Minimum Spanning Tree Algorithm. SWAT 1996: 246-258

Martin Farach, Teresa M. Przytycka, Mikkel Thorup: On the Agreement of Many Trees. Inf. Process. Lett. 55(6): 297-301 (1995)

Lawrence L. Larmore, Teresa M. Przytycka: Constructing Huffman Trees in Parallel. SIAM J. Comput. 24(6): 1163-1169 (1995)

Martin Farach, Teresa M. Przytycka, Mikkel Thorup: Computing the Agreement of Trees with Bounded Degrees. ESA 1995: 381-393

Jan Kratochvíl, Teresa M. Przytycka: Grid Intersection and Box Intersection Graphs on Surfaces (Extended Abstract). Graph Drawing 1995: 365-372

Christos Levcopoulos, Teresa M. Przytycka: A Work-Time Trade-off in Parallel Computation of Huffman Trees and Concave Least Weight Subsequence Problem. Parallel Processing Letters 4: 37-43 (1994)

Lawrence L. Larmore, Teresa M. Przytycka: A Fast Algorithm for Optimum Height-Limited Alphabetic Binary Trees. SIAM J. Comput. 23(6): 1283-1312 (1994)

Teresa M. Przytycka, Lawrence L. Larmore: The Optimal Alphabetic Tree Problem Revisited. ICALP 1994: 251-262

Lisa Higham, Teresa M. Przytycka: Asymptotically Optimal Election on Weighted Rings. SWAT 1994: 207-218

S. Bellantoni, Irith Ben-Arroyo Hartman, Teresa M. Przytycka, Sue Whitesides: Grid intersection graphs and boxicity. Discrete Mathematics 114(1-3): 41-49 (1993)

Lawrence L. Larmore, Teresa M. Przytycka, Wojciech Rytter: Parallel Construction of Optimal Alphabetic Trees. SPAA 1993: 214-223

Lisa Higham, Teresa M. Przytycka: A Simple, Efficient Algorithm for Maximum Finding on Rings. WDAG 1993: 249-263

Pilar de la Torre, Raymond Greenlaw, Teresa M. Przytycka: Optimal Tree Ranking is in NC. Parallel Processing Letters 2: 31-41 (1992)

Teresa M. Przytycka, Derek G. Corneil: Parallel Algorithms for Parity Graphs. J. Algorithms 12(1): 96-109 (1991)

Teresa M. Przytycka, Józef H. Przytycki: Subexponentially computable truncations of Jones-types polynomials. Graph Structure Theory 1991: 63-108

Teresa M. Przytycka, Józef H. Przytycki: Surface triangulations without short noncontractible cycles. Graph Structure Theory 1991: 303-340

Lawrence L. Larmore, Teresa M. Przytycka: Parallel Construction of Trees with Optimal Weighted Path Length. SPAA 1991: 71-80

David G. Kirkpatrick, Teresa M. Przytycka: Parallel recognition of complement reducible graphs and cotree construction. Discrete Applied Mathematics 29(1): 79-96 (1990)

Teresa M. Przytycka, Józef H. Przytycki: On a Lower Bound for Short Noncontractible Cycles in Embedded Graphs. SIAM J. Discrete Math. 3(2): 281-293 (1990)

David G. Kirkpatrick, Teresa M. Przytycka: Parallel Construction of near Optimal binary Trees. SPAA 1990: 234-243

David G. Kirkpatrick, Teresa M. Przytycka: An optimal parallel minimax tree algorithm. SPDP 1990: 293-300

Karl R. Abrahamson, Norm Dadoun, David G. Kirkpatrick, Teresa M. Przytycka: A Simple Parallel Tree Contraction Algorithm. J. Algorithms 10(2): 287-302 (1989)