Yann Ponty

Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl: A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs. RECOMB 2013: 199-211

Evan Senter, Saad Sheikh, Iván Dotú, Yann Ponty, Peter Clote: Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches. RECOMB 2013: 264-265

Cyril Banderier, Olivier Bodini, Yann Ponty, Hanane Tafat Bouzid: Biodiversity of Pattern Distributions in Combinatorial Ecosystems. ANALCO 2012: 107-115

Saad Sheikh, Rolf Backofen, Yann Ponty: Impact of the Energy Model on the Complexity of RNA Folding with Pseudoknots. CPM 2012: 321-333

Philippe Rinaudo, Yann Ponty, Dominique Barth, Alain Denise: Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots - (Extended Abstract). WABI 2012: 149-164

Jérémie Du Boisberranger, Danièle Gardy, Yann Ponty: The weighted words collector. CoRR abs/1202.0920 (2012)

Yann Ponty: Rule-weighted and terminal-weighted context-free grammars have identical expressivity. CoRR abs/1205.0627 (2012)

Philippe Rinaudo, Yann Ponty, Dominique Barth, Alain Denise: Tree decomposition and . CoRR abs/1206.3789 (2012)

W. A. Lorenz, Yann Ponty: Non-redundant random generation algorithms for weighted context-free languages. CoRR abs/1211.0303 (2012)

Jérôme Waldispühl, Yann Ponty: An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes Under Evolutionary Pressure. Journal of Computational Biology 18(11): 1465-1479 (2011)

Jérôme Waldispühl, Yann Ponty: An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes under Evolutionary Pressure. RECOMB 2011: 501-515

Yann Ponty, Cédric Saule: A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms. WABI 2011: 250-269

Alain Denise, Yann Ponty, Michel Termier: Controlled non-uniform random generation of decomposable structures. Theor. Comput. Sci. 411(40-42): 3527-3552 (2010)

Olivier Bodini, Yann Ponty: Multi-dimensional Boltzmann Sampling of context-free Languages. CoRR abs/1002.0046 (2010)

Alain Denise, Yann Ponty, Michel Termier: Controlled non uniform random generation of decomposable structures. CoRR abs/1006.0423 (2010)

Danièle Gardy, Yann Ponty: Weighted random generation of context-free languages: Analysis of collisions in random urn occupancy models. CoRR abs/1012.1129 (2010)

Yann Ponty: Non-redundant random generation from weighted context-free languages. CoRR abs/1012.4560 (2010)

Kévin Darty, Alain Denise, Yann Ponty: VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics 25(15): 1974-1975 (2009)

Mireille Bousquet-Mélou, Yann Ponty: Culminating Paths. Discrete Mathematics & Theoretical Computer Science 10(2) (2008)

W. A. Lorenz, Yann Ponty, Peter Clote: Asymptotics of RNA Shapes. Journal of Computational Biology 15(1): 31-63 (2008)

Yann Ponty, R. Istrate, E. Porcelli, Peter Clote: LocalMove: computing on-lattice fits for biopolymers. Nucleic Acids Research 36(Web-Server-Issue): 216-222 (2008)

Fabrizio Ferrè, Yann Ponty, W. A. Lorenz, Peter Clote: DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities. Nucleic Acids Research 35(Web-Server-Issue): 659-668 (2007)

Yann Ponty, Michel Termier, Alain Denise: GenRGenS: software for generating random genomic sequences and structures. Bioinformatics 22(12): 1534-1535 (2006)

Gregory Kucherov, Laurent Noé, Yann Ponty: Estimating seed sensitivity on homogeneous alignments. CoRR abs/cs/0603106 (2006)

Gregory Kucherov, Laurent Noé, Yann Ponty: Estimating Seed Sensitivity on Homogeneous Alignments. BIBE 2004: 387-394