Jose C. Nacher

Jose C. Nacher: Community structure of non-coding RNA interaction network. J. Integrative Bioinformatics 10(2) (2013)

Jose C. Nacher, Vladimir B. Ryabov: Nonlinear response of gene expression to chemical perturbations: A noise-detector model and its predictions. Biosystems 107(1): 9-17 (2012)

Yang Zhao, Morihiro Hayashida, Jose C. Nacher, Hiroshi Nagamochi, Tatsuya Akutsu: Protein complex prediction via improved verification methods using constrained domain-domain matching. IJBRA 8(3/4): 210-227 (2012)

Jose C. Nacher, N. Araki: Structural characterization and modeling of ncRNA-protein interactions. Biosystems 101(1): 10-19 (2010)

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu: The role of internal duplication in the evolution of multi-domain proteins. Biosystems 101(2): 127-135 (2010)

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu: Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs. Biosystems 95(2): 155-159 (2009)

Jose C. Nacher, T. Ochiai, Morihiro Hayashida, Tatsuya Akutsu: A Bipartite Graph Based Model of Protein Domain Networks. Complex (1) 2009: 525-535

Jose C. Nacher, T. Ochiai: Transcription and noise in negative feedback loops. Biosystems 91(1): 76-82 (2008)

Kazuhiro Takemoto, Jose C. Nacher, Tatsuya Akutsu: Correlation between structure and temperature in prokaryotic metabolic networks. BMC Bioinformatics 8 (2007)

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu: Topological aspects of protein networks. Emergent Intelligence of Networked Agents 2007: 147-158

Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu: Identification of metabolic units induced by environmental signals. ISMB (Supplement of Bioinformatics) 2006: 375-383

Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu: Clustering under the line graph transformation: application to reaction network. BMC Bioinformatics 5: 207 (2004)