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Robert F. Murphy
2010 – today
- 2013
[j18]Luís Pedro Coelho, Joshua Kangas, Armaghan W. Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, Robert F. Murphy: Determining the subcellular location of new proteins from microscope images using local features. Bioinformatics 29(18): 2343-2349 (2013)- 2012
- [j17]Jieyue Li, Liang Xiong, Jeff G. Schneider, Robert F. Murphy: Protein subcellular location pattern classification in cellular images using latent discriminative models. Bioinformatics 28(12): 32-39 (2012)
- [c35]Robert F. Murphy: (3) The CellOrganizer project: An open source system to learn image-derived models of subcellular organization over time and space. BIBM 2012: 1-2
- 2011
- [j16]Charles Jackson, Estelle Glory-Afshar, Robert F. Murphy, Jelena Kovacevic: Model building and intelligent acquisition with application to protein subcellular location classification. Bioinformatics [ISMB/ECCB] 27(13): 1854-1859 (2011)
- [j15]Tien-ho Lin, Ziv Bar-Joseph, Robert F. Murphy: Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs. Journal of Computational Biology 18(11): 1709-1722 (2011)
- [j14]Tien-ho Lin, Robert F. Murphy, Ziv Bar-Joseph: Discriminative Motif Finding for Predicting Protein Subcellular Localization. IEEE/ACM Trans. Comput. Biology Bioinform. 8(2): 441-451 (2011)
- [c34]Aabid Shariff, Robert F. Murphy, Gustavo K. Rohde: Automated estimation of microtubule model parameters from 3-D live cell microscopy images. ISBI 2011: 1330-1333
- [c33]Arvind Rao, Robert F. Murphy: Determination of protein location diversity via analysis of immunohistochemical images from the Human Protein Atlas. ISBI 2011: 1727-1729
- [c32]Tien-ho Lin, Ziv Bar-Joseph, Robert F. Murphy: Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs. RECOMB 2011: 204-221
- 2010
- [j13]Luís Pedro Coelho, Tao Peng, Robert F. Murphy: Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing. Bioinformatics [ISMB] 26(12): 7-12 (2010)
- [j12]Yanhua Hu, Elvira Osuna-Highley, Juchang Hua, Theodore Scott Nowicki, Robert Stolz, Camille McKayle, Robert F. Murphy: Automated analysis of protein subcellular location in time series images. Bioinformatics 26(13): 1630-1636 (2010)
- [j11]Amr Ahmed, Andrew Arnold, Luís Pedro Coelho, Joshua Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy: Structured literature image finder: Parsing text and figures in biomedical literature. J. Web Sem. 8(2-3): 151-154 (2010)
- [c31]Estelle Glory-Afshar, Elvira Osuna-Highley, Brian Granger, Robert F. Murphy: A graphical model to determine the subcellular protein location in artificial tissues. ISBI 2010: 1037-1040
2000 – 2009
- 2009
- [j10]Charles Jackson, Robert F. Murphy, Jelena Kovacevic: Intelligent Acquisition and Learning of Fluorescence Microscope Data Models. IEEE Transactions on Image Processing 18(9): 2071-2084 (2009)
- [c30]Robert F. Murphy, Chun-Nan Hsu, Loris Nanni: Workshop summary: Automated interpretation and modelling of cell images. ICML 2009: 164
- [c29]Luís Pedro Coelho, Aabid Shariff, Robert F. Murphy: Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms. ISBI 2009: 518-521
- [c28]Tao Peng, Wei Wang, Gustavo K. Rohde, Robert F. Murphy: Instance-Based Generative Biological Shape Modeling. ISBI 2009: 690-693
- [c27]Justin Newberg, Jieyue Li, Arvind Rao, Fredrik Ponten, Mathias Uhlen, Emma Lundberg, Robert F. Murphy: Automated Analysis of Human Protein Atlas Immunofluorescence Images. ISBI 2009: 1023-1026
- [c26]Amr Ahmed, Eric P. Xing, William W. Cohen, Robert F. Murphy: Structured correspondence topic models for mining captioned figures in biological literature. KDD 2009: 39-48
- 2008
- [j9]Yuntao Qian, Robert F. Murphy: Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models. Bioinformatics 24(4): 569-576 (2008)
- [j8]Shann-Ching Chen, Geoffrey J. Gordon, Robert F. Murphy: Graphical Models for Structured Classification, with an Application to Interpreting Images of Protein Subcellular Location Patterns. Journal of Machine Learning Research 9: 651-682 (2008)
- [c25]Luís Pedro Coelho, Robert F. Murphy: Identifying Subcellular Locations from Images of Unknown Resolution. BIRD 2008: 235-242
- [c24]Estelle Glory, Justin Newberg, Robert F. Murphy: Automated comparison of protein subcellular location patterns between images of normal and cancerous tissues. ISBI 2008: 304-307
- [c23]Robert F. Murphy: Automated proteome-wide determination of subcellular location using high throughput microscopy. ISBI 2008: 308-311
- [c22]Gustavo K. Rohde, Wei Wang, Tao Peng, Robert F. Murphy: Deformation-based nonlinear dimension reduction: Applications to nuclear morphometry. ISBI 2008: 500-503
- [e1]Mourad Elloumi, Josef Küng, Michal Linial, Robert F. Murphy, Kristan Schneider, Cristian Toma (Eds.): Bioinformatics Research and Development, Second International Conference, BIRD 2008, Vienna, Austria, July 7-9, 2008, Proceedings. Communications in Computer and Information Science 13, Springer 2008, ISBN 978-3-540-70598-7
- 2007
- [j7]Amina Chebira, Yann Barbotin, Charles Jackson, Thomas E. Merryman, Gowri Srinivasa, Robert F. Murphy, Jelena Kovacevic: A multiresolution approach to automated classification of protein subcellular location images. BMC Bioinformatics 8 (2007)
- [c21]Xiang Chen, Robert F. Murphy: Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions. BIRD 2007: 328-342
- [c20]Charles Jackson, Robert F. Murphy, Jelena Kovacevic: Efficient Acquisition and Learning of Fluorescence Microscope Data Models. ICIP (6) 2007: 245-248
- [c19]Robert F. Murphy: Systematic Description of Subcellular Location for Integration with Proteomics Databases and Systems Biology Modeling. ISBI 2007: 1052-1055
- [c18]Juchang Hua, Orhan N. Ayasli, William W. Cohen, Robert F. Murphy: Identifying Fluorescence Microscope Images in Online Journal Articles Using Both Image and Text Features. ISBI 2007: 1224-1227
- [c17]Shann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy: Automated image analysis of protein localization in budding yeast. ISMB/ECCB (Supplement of Bioinformatics) 2007: 66-71
- [c16]Zhenzhen Kou, William W. Cohen, Robert F. Murphy: A Stacked Graphical Model for Associating Sub-Images with Sub-Captions. Pacific Symposium on Biocomputing 2007: 257-268
- 2006
- [j6]Shann-Ching Chen, Robert F. Murphy: A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images. BMC Bioinformatics 7: 90 (2006)
- [c15]Shann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy: A Novel Graphical Model Approach to Segmenting Cell Images. CIBCB 2006: 1-8
- [c14]Shann-Ching Chen, Geoffrey J. Gordon, Robert F. Murphy: A novel approximate inference approach to automated classification of protein subcellular location patterns in multi-cell images. ISBI 2006: 558-561
- [c13]Ting Zhao, Stalia Soto, Robert F. Murphy: Improved comparison of protein subcellular location patterns. ISBI 2006: 562-565
- [c12]Lionel Coulot, Heather Kirschner, Amina Chebira, José M. F. Moura, Jelena Kovacevic, Elvira Garcia Osuna, Robert F. Murphy: Topology preserving STACS segmentation of protein subcellular location images. ISBI 2006: 566-569
- [c11]Yanhua Hu, Jesus Carmona, Robert F. Murphy: Application of temporal texture features to automated analysis of protein subcellular locations in time series fluorescence microscope images. ISBI 2006: 1028-1031
- 2005
- [j5]Ting Zhao, Meel Velliste, Michael V. Boland, Robert F. Murphy: Object Type Recognition for Automated Analysis of Protein Subcellular Location. IEEE Transactions on Image Processing 14(9): 1351-1359 (2005)
- [c10]Zhenzhen Kou, William W. Cohen, Robert F. Murphy: High-recall protein entity recognition using a dictionary. ISMB (Supplement of Bioinformatics) 2005: 266-273
- [c9]Robert F. Murphy, Christos Faloutsos: Research issues in protein location image databases. SIGMOD Conference 2005: 966-967
- [p1]Kai Huang, Robert F. Murphy: Data Mining Methods for a Systematics of Protein Subcellular Location. Data Mining in Bioinformatics 2005: 143-187
- 2004
- [j4]Kai Huang, Robert F. Murphy: Boosting accuracy of automated classification of fluorescence microscope images for location proteomics. BMC Bioinformatics 5: 78 (2004)
- [j3]Ambuj K. Singh, B. S. Manjunath, Robert F. Murphy: A Distributed Database for BioMolecular Images. SIGMOD Record 33(2): 65-71 (2004)
- [c8]
- [c7]
- 2003
- [j2]Robert F. Murphy, Meel Velliste, Gregory Porreca: Robust Numerical Features for Description and Classification of Subcellular Location Patterns in Fluorescence Microscope Images. VLSI Signal Processing 35(3): 311-321 (2003)
- [c6]Zhenzhen Kou, William W. Cohen, Robert F. Murphy: Extracting information from text and images for location proteomics. BIOKDD 2003: 2-9
- [c5]William W. Cohen, Richard C. Wang, Robert F. Murphy: Understanding captions in biomedical publications. KDD 2003: 499-504
- 2002
- [c4]Kai Huang, Jennifer Lin, James A. Gajnak, Robert F. Murphy: Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database. ISBI 2002: 325-328
- [c3]Meel Velliste, Robert F. Murphy: Automated determination of protein subcellular locations from 3D fluorescence microscope images. ISBI 2002: 867-870
- 2001
- [j1]Michael V. Boland, Robert F. Murphy: A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. Bioinformatics 17(12): 1213-1223 (2001)
- [c2]Robert F. Murphy, Meel Velliste, Jie Yao, Gregory Porreca: Searching Online Journals for Fluorescence Microscope Images Depicting Protein Subcellular Location Patterns. BIBE 2001: 119-128
- 2000
- [c1]Robert F. Murphy, Michael V. Boland, Meel Velliste: Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated Analysis of Fluorescence Microscope Images. ISMB 2000: 251-259
Coauthor Index
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last updated on 2013-10-16 21:27 CEST by the dblp team