John L. Markley

Woonghee Lee, Arash Bahrami, John L. Markley: ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy. Bioinformatics 29(4): 515-517 (2013)

Jurgen F. Doreleijers, Wim F. Vranken, Christopher F. Schulte, John L. Markley, Eldon L. Ulrich, Gert Vriend, Geerten W. Vuister: NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB. Nucleic Acids Research 40(Database-Issue): 519-524 (2012)

Woonghee Lee, John L. Markley: PACSY database, a relational database management system for Protein structure and nuclear Magnetic Resonance chemical shift analysis. BIBM Workshops 2012: 930-932

Woonghee Lee, Jin Hae Kim, William M. Westler, John L. Markley: PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. Bioinformatics 27(12): 1727-1728 (2011)

Woonghee Lee, William M. Westler, Arash Bahrami, Hamid Eghbalnia, John L. Markley: PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy. Bioinformatics 25(16): 2085-2087 (2009)

Arash Bahrami, Amir H. Assadi, John L. Markley, Hamid Eghbalnia: Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy. PLoS Computational Biology 5(3) (2009)

Eldon L. Ulrich, Hideo Akutsu, Jurgen F. Doreleijers, Yoko Harano, Yannis E. Ioannidis, Jundong Lin, Miron Livny, Steve Mading, Dimitri Maziuk, Zachary Miller, Eiichi Nakatani, Christopher F. Schulte, David E. Tolmie, R. Kent Wenger, Hongyang Yao, John L. Markley: BioMagResBank. Nucleic Acids Research 36(Database-Issue): 402-408 (2008)

Kim Henrick, Zukang Feng, Wolfgang Bluhm, Dimitris Dimitropoulos, Jurgen F. Doreleijers, Shuchismita Dutta, Judith L. Flippen-Anderson, John M. C. Ionides, Chisa Kamada, Eugene Krissinel, Catherine L. Lawson, John L. Markley, Haruki Nakamura, Richard H. Newman, Yukiko Shimizu, Jawahar Swaminathan, Sameer Velankar, Jeramia Ory, Eldon L. Ulrich, Wim Vranken, John D. Westbrook, Reiko Yamashita, Huanwang Yang, Jasmine Young, Muhammed Yousufuddin, Helen M. Berman: Remediation of the protein data bank archive. Nucleic Acids Research 36(Database-Issue): 426-433 (2008)

Helen M. Berman, Kim Henrick, Haruki Nakamura, John L. Markley: The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Research 35(Database-Issue): 301-303 (2007)

John L. Markley, Mark E. Anderson, Qiu Cui, Hamid Eghbalnia, Ian A. Lewis, Adrian D. Hegeman, Jing Li, Christopher F. Schulte, Michael R. Sussman, William M. Westler, Eldon L. Ulrich, Zsolt Zolnai: New Bioinformatics Resources For Metabolomics. Pacific Symposium on Biocomputing 2007: 157-168