Sudhir Kumar

Vatsal Sharan, Sudhir Kumar, Rajesh Hegde: Multiple source localization using randomly distributed wireless sensor nodes. COMSNETS 2013: 1-2

Vanessa E. Gray, Kimberly R. Kukurba, Sudhir Kumar: Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations. Bioinformatics 28(16): 2093-2096 (2012)

Sudhir Kumar, Glen Stecher, Daniel Peterson, Koichiro Tamura: MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis. Bioinformatics 28(20): 2685-2686 (2012)

Sudhir Kumar, Kelly Boccia, Michael McCutchan, Jieping Ye: Exploring spatial patterns of gene expression from Fruit Fly embryogenesis on the iPhone. Bioinformatics 28(21): 2847-2848 (2012)

Lei Yuan, Alexander Woodard, Shuiwang Ji, Yuan Jiang, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye: Learning Sparse Representations for Fruit-Fly Gene Expression Pattern Image Annotation and Retrieval. BMC Bioinformatics 13: 107 (2012)

Ying-Xin Li, Shuiwang Ji, Sudhir Kumar, Jieping Ye, Zhi-Hua Zhou: Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label Learning. IEEE/ACM Trans. Comput. Biology Bioinform. 9(1): 98-112 (2012)

Sudhir Kumar, S. Blair Hedges: TimeTree2: species divergence times on the iPhone. Bioinformatics 27(14): 2023-2024 (2011)

Sudhir Kumar, Charlotte Konikoff, Bernard Van Emden, Christopher Busick, Kailah T. Davis, Shuiwang Ji, Lin-Wei Wu, Hector Ramos, Thomas Brody, Sethuraman Panchanathan, Jieping Ye, Timothy L. Karr, Kristyn Gerold, Michael McCutchan, Stuart J. Newfeld: FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis. Bioinformatics 27(23): 3319-3320 (2011)

Kapil Kumar, Akshay Dvivedi, Sudhir Kumar: Parametric optimisation of surface roughness on wire-EDM using Taguchi method. IJMTM 24(1/2/3/4): 88-107 (2011)

Antonio Marco, Charlotte Konikoff, Timothy L. Karr, Sudhir Kumar: Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster. Bioinformatics 25(19): 2473-2477 (2009)

Shuiwang Ji, Ying-Xin Li, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye: A bag-of-words approach for Drosophila gene expression pattern annotation. BMC Bioinformatics 10 (2009)

Sudhir Kumar, Pradeep Kumar, H. S. Shan, Rajesh Kumar Bhushan: Parametric optimisation of percent deviation for casting dimensions in VAEPC process by using Taguchi technique. IJMR 4(4): 395-409 (2009)

Ying-Xin Li, Shuiwang Ji, Sudhir Kumar, Jieping Ye, Zhi-Hua Zhou: DrosophilaGene Expression Pattern Annotation through Multi-Instance Multi-Label Learning. IJCAI 2009: 1445-1450

Shuiwang Ji, Lei Yuan, Ying-Xin Li, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye: Drosophila gene expression pattern annotation using sparse features and term-term interactions. KDD 2009: 407-416

Jieping Ye, Ravi Janardan, Sudhir Kumar: Biological Image Analysis via Matrix Approximation. Encyclopedia of Data Warehousing and Mining 2009: 166-170

Sudhir Kumar, Masatoshi Nei, Joel Dudley, Koichiro Tamura: MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics 9(4): 299-306 (2008)

Shuiwang Ji, Liang Sun, Rong Jin, Sudhir Kumar, Jieping Ye: Automated annotation of Drosophila gene expression patterns using a controlled vocabulary. Bioinformatics 24(17): 1881-1888 (2008)

Jieping Ye, Jianhui Chen, Ravi Janardan, Sudhir Kumar: Developmental stage annotation of Drosophila gene expression pattern images via an entire solution path for LDA. TKDD 2(1) (2008)

Sudhir Kumar, Joel Dudley: Bioinformatics software for biologists in the genomics era. Bioinformatics 23(14): 1713-1717 (2007)

Charles J. Colbourn, Sudhir Kumar: Lower bounds on multiple sequence alignment using exact 3-way alignment. BMC Bioinformatics 8 (2007)

S. Blair Hedges, Joel Dudley, Sudhir Kumar: TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 22(23): 2971-2972 (2006)

Sudhir Kumar, Koichiro Tamura, Masatoshi Nei: MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5(2): 150-163 (2004)

Rajalakshmi Gurunathan, Bernard Van Emden, Sethuraman Panchanathan, Sudhir Kumar: Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations. BMC Bioinformatics 5: 202 (2004)

Sudhir Kumar, Koichiro Tamura, Ingrid B. Jakobsen, Masatoshi Nei: MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17(12): 1244-1245 (2001)

Paul Walton Purdom Jr., Phillip G. Bradford, Koichiro Tamura, Sudhir Kumar: Single column discrepancy and dynamic max-mini optimizations for quickly finding the most parsimonious evolutionary trees. Bioinformatics 16(2): 140-151 (2000)

S. Srivastava, S. C. Bose, B. P. Mathur, Arti Noor, Raj Singh, A. S. Mandal, K. Prabhakaran, A. Karmakar, Chandra Shekhar, Sudhir Kumar, Amit K. Agarwal: Evolution of Architectural Concepts and Design Methods of Microprocessors. VLSI Design 1998: 312-317

Sudhir Kumar, Koichiro Tamura, Masatoshi Nei: MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Computer Applications in the Biosciences 10(2): 189-191 (1994)