Judith Klein-Seetharaman

Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman: Techniques to cope with missing data in host-pathogen protein interaction prediction. Bioinformatics 28(18): 466-472 (2012)

Javier Garcia-Garcia, Sylvia Schleker, Judith Klein-Seetharaman, Baldo Oliva: BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference. Nucleic Acids Research 40(Web-Server-Issue): 147-151 (2012)

Nevenka Dimitrova, Judith Klein-Seetharaman, Peter Beyerlein, Ahmed H. Tewfik: Signal Processing in Genomics and Proteomics: Defining Its Role [From the Guest Editors]. IEEE Signal Process. Mag. 29(1): 19-21 (2012)

Zhongming Zhao, Junfeng Xia, Oznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman: Virus interactions with human signal transduction pathways. I. J. Computational Biology and Drug Design 4(1): 83-105 (2011)

Yanjun Qi, Oznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman, Jason Weston: Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins. Bioinformatics 26(18) (2010)

Irtisha Singh, Oznur Tastan, Judith Klein-Seetharaman: Comparison of virus interactions with human signal transduction pathways. BCB 2010: 17-24

Sivaraman Balakrishnan, Oznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman: Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1. GENSiPS 2009: 1-4

Oznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman: Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration. Pacific Symposium on Biocomputing 2009: 516-527

Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj Reddy, Judith Klein-Seetharaman: Transmembrane helix prediction using amino acid property features and latent semantic analysis. BMC Bioinformatics 9(S-1) (2008)

Naveena Yanamala, Kalyan C. Tirupula, Judith Klein-Seetharaman: Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors. BMC Bioinformatics 9(S-1) (2008)

Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph: Protein complex identification by supervised graph local clustering. ISMB 2008: 250-268

Madhavi Ganapathiraju, Christopher Jon Jursa, Hassan A. Karimi, Judith Klein-Seetharaman: TMpro web server and web service: transmembrane helix prediction through amino acid property analysis. Bioinformatics 23(20): 2795-2796 (2007)

Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph: A mixture of feature experts approach for protein-protein interaction prediction. BMC Bioinformatics 8(S-10) (2007)

Yang Cai, Ingo Snel, Betty Cheng, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman: BioSim--a biomedical character-based problem solving environment. Future Generation Comp. Syst. 21(7): 1145-1156 (2005)

Betty Yee Man Cheng, Jaime G. Carbonell, Judith Klein-Seetharaman: A Machine Text-Inspired Machine Learning Approach for Identification of Transmembrane Helix Boundaries. ISMIS 2005: 29-37

Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph: Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources. Pacific Symposium on Biocomputing 2005

Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan: Comparison of probabilistic combination methods for protein secondary structure prediction. Bioinformatics 20(17): 3099-3107 (2004)

Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj Reddy, Judith Klein-Seetharaman: Computational Biology and Language. Ambient Intelligence for Scientific Discovery 2004: 25-47

Yang Cai, Judith Klein-Seetharaman: Ambient intelligence for scientific discovery. CHI Extended Abstracts 2004: 1705-1706

Deborah K. Weisser, Judith Klein-Seetharaman: Identification of fundamental building blocks in protein sequences using statistical association measures. SAC 2004: 154-161

Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan: Context sensitive vocabulary and its application in protein secondary structure prediction. SIGIR 2004: 538-539

Yang Cai, Ingo Snel, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman: Towards Biomedical Problem Solving in a Game Environment. International Conference on Computational Science 2003: 1005-1014