Sarah A. Killcoyne

Sarah A. Killcoyne, Jeremy Handcock, Thomas Robinson, Eric W. Deutsch, John Boyle: Interfaces to PeptideAtlas: a case study of standard data access systems. Briefings in Bioinformatics 13(5): 615-626 (2012)

John Boyle, Richard Kreisberg, Ryan Bressler, Sarah A. Killcoyne: Methods for visual mining of genomic and proteomic data atlases. BMC Bioinformatics 13: 58 (2012)

Steven Lewis, Attila Csordas, Sarah A. Killcoyne, Henning Hermjakob, Michael R. Hoopmann, Robert L. Moritz, Eric W. Deutsch, John Boyle: Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework. BMC Bioinformatics 13: 324 (2012)

David B. Burdick, Christopher C. Cavnor, Jeremy Handcock, Sarah A. Killcoyne, Jake Lin, Bruz Marzolf, Stephen A. Ramsey, Hector Rovira, Ryan Bressler, Ilya Shmulevich, John Boyle: SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments. BMC Bioinformatics 11: 377 (2010)

Steven Lewis, Sheila Reynolds, Hector Rovira, Mike O'Leary, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle: Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data. CloudCom 2010: 776-779

Hector Rovira, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle: An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity. DILS 2010: 179-191

John Boyle, Hector Rovira, Christopher C. Cavnor, David B. Burdick, Sarah A. Killcoyne, Ilya Shmulevich: Adaptable data management for systems biology investigations. BMC Bioinformatics 10 (2009)

Sarah A. Killcoyne, John Boyle: Managing Chaos: Lessons Learned Developing Software in the Life Sciences. Computing in Science and Engineering 11(6): 20-29 (2009)

John Boyle, Christopher C. Cavnor, Sarah A. Killcoyne, Ilya Shmulevich: Systems biology driven software design for the research enterprise. BMC Bioinformatics 9 (2008)

Erin M. Hulbert, Luc J. Smink, Ellen C. Adlem, James E. Allen, David B. Burdick, Oliver S. Burren, Christopher C. Cavnor, Geoffrey E. Dolman, Daisy Flamez, Karen F. Friery, Barry C. Healy, Sarah A. Killcoyne, Burak Kutlu, Helen Schuilenburg, Neil M. Walker, Josyf Mychaleckyj, Decio L. Eizirik, Linda S. Wicker, John A. Todd, Nathan Goodman: T1DBase: integration and presentation of complex data for type 1 diabetes research. Nucleic Acids Research 35(Database-Issue): 742-746 (2007)