Shuichi Kawashima

Akihiro Nakaya, Toshiaki Katayama, Masumi Itoh, Kazushi Hiranuka, Shuichi Kawashima, Yuki Moriya, Shujiro Okuda, Michihiro Tanaka, Toshiaki Tokimatsu, Yoshihiro Yamanishi, Akiyasu C. Yoshizawa, Minoru Kanehisa, Susumu Goto: KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Research 41(Database-Issue): 353-357 (2013)

Priyanjana M. N. Dharmawardane, Tohru Nakamura, Shuichi Kawashima: Decay Estimates of Solutions for Quasi-Linear Hyperbolic Systems of Viscoelasticity. SIAM J. Math. Analysis 44(3): 1976-2001 (2012)

Yoshihiro Ueda, Shu Wang, Shuichi Kawashima: Dissipative Structure of the Regularity-Loss Type and Time Asymptotic Decay of Solutions for the Euler-Maxwell System. SIAM J. Math. Analysis 44(3): 2002-2017 (2012)

Toshiaki Katayama, Shinobu Okamoto, Shuichi Kawashima, Hiroshi Mori, Takamoto Fujisawa: Semantic Integration of the Genome Annotations. SWAT4LS 2012

Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul J. P. Bonnal, José M. Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi: The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomedical Semantics 2: 4 (2011)

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J. P. Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José M. Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi: The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomedical Semantics 1: 8 (2010)

Hiroyuki Wakaguri, Yutaka Suzuki, Toshiaki Katayama, Shuichi Kawashima, Eri Kibukawa, Kazushi Hiranuka, Masahide Sasaki, Sumio Sugano, Junichi Watanabe: Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009. Nucleic Acids Research 37(Database-Issue): 520-525 (2009)

Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama, Minoru Kanehisa: AAindex: amino acid index database, progress report 2008. Nucleic Acids Research 36(Database-Issue): 202-205 (2008)

Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi: KEGG for linking genomes to life and the environment. Nucleic Acids Research 36(Database-Issue): 480-484 (2008)

Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi: VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research 35(Web-Server-Issue): 625-632 (2007)

Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa: From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Research 34(Database-Issue): 354-357 (2006)

Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa: ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Research 34(Database-Issue): 358-362 (2006)

Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto: EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Research 34(Web-Server-Issue): 459-462 (2006)

Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori: The KEGG resource for deciphering the genome. Nucleic Acids Research 32(Database-Issue): 277-280 (2004)

Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya: The KEGG databases at GenomeNet. Nucleic Acids Research 30(1): 42-46 (2002)

Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W. Makabe: Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 30(1): 119-120 (2002)

Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, Kazuhiro W. Makabe: MAGEST: MAboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 28(1): 133-135 (2000)

Shuichi Kawashima, Minoru Kanehisa: AAindex: Amino Acid index database. Nucleic Acids Research 28(1): 374 (2000)

Shuichi Kawashima, Hiroyuki Ogata, Minoru Kanehisa: AAindex: Amino Acid Index Database. Nucleic Acids Research 27(1): 368-369 (1999)