Jaime Huerta-Cepas

Jaime Huerta-Cepas, Joaquín Dopazo, Martijn A. Huynen, Toni Gabaldón: Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings in Bioinformatics 12(5): 442-448 (2011)

Jaime Huerta-Cepas, Toni Gabaldón: Assigning duplication events to relative temporal scales in genome-wide studies. Bioinformatics 27(1): 38-45 (2011)

Jaime Huerta-Cepas, Salvador Capella-Gutiérrez, Leszek P. Pryszcz, Ivan Denisov, Diego Kormes, Marina Marcet-Houben, Toni Gabaldón: PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. Nucleic Acids Research 39(Database-Issue): 556-560 (2011)

Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo: Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Research 39(Web-Server-Issue): 470-474 (2011)

Jaime Huerta-Cepas, Joaquín Dopazo, Toni Gabaldón: ETE: a python Environment for Tree Exploration. BMC Bioinformatics 11: 24 (2010)

Mateus Patricio, Jaime Huerta-Cepas, Toni Gabaldón, Rafael Zardoya, David Posada: Automatic Prediction of the Genetic Code. IWANN (2) 2009: 1125-1129

Jaime Huerta-Cepas, Anibal Bueno, Joaquín Dopazo, Toni Gabaldón: PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Research 36(Database-Issue): 491-496 (2008)

Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo: GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Research 36(Web-Server-Issue): 308-314 (2008)

Fátima Al-Shahrour, Leonardo Arbiza, Hernán Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquín Dopazo: From genes to functional classes in the study of biological systems. BMC Bioinformatics 8 (2007)

Agatha Schlüter, Stéphane Fourcade, Enric Domènech-Estévez, Toni Gabaldón, Jaime Huerta-Cepas, Guillaume Berthommier, Raymond Ripp, Ronald J. A. Wanders, Olivier Poch, Aurora Pujol: PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Research 35(Database-Issue): 815-822 (2007)

Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo: Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Research 35(Web-Server-Issue): 38-42 (2007)

David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo: Next station in microarray data analysis: GEPAS. Nucleic Acids Research 34(Web-Server-Issue): 486-491 (2006)