Stavros J. Hamodrakas

Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas: CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. SETN 2012: 285-290

Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas: OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Research 39(Database-Issue): 324-331 (2011)

Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas: ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. Bioinformatics 26(19): 2490-2492 (2010)

Pantelis G. Bagos, Georgios N. Tsaousis, Stavros J. Hamodrakas: How Many 3D Structures Do We Need to Train a Predictor? Genomics, Proteomics & Bioinformatics 7(3): 128-137 (2009)

Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas: gpDB: a database of GPCRs, G-proteins, effectors and their interactions. Bioinformatics 24(12): 1471-1472 (2008)

Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas: Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. J. Bioinformatics and Computational Biology 6(2): 387-401 (2008)

Pantelis G. Bagos, Theodore D. Liakopoulos, Stavros J. Hamodrakas: Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins. BMC Bioinformatics 7: 189 (2006)

Evangelia Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas: PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization. Genomics, Proteomics & Bioinformatics 4(1): 48-55 (2006)

Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas: Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks. Bioinformatics 21(22): 4101-4106 (2005)

Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas: Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinformatics 6: 7 (2005)

Evangelia I. Petsalakis, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas: N-terminal sequence-based prediction of subcellular location. BMC Bioinformatics 6(S-3) (2005)

Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas: A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models. BMC Bioinformatics 6: 104 (2005)

Ioannis C. Spyropoulos, Theodore Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas: TMRPres2D: high quality visual representation of transmembrane protein models. Bioinformatics 20(17): 3258-3260 (2004)

Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas: A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins. BMC Bioinformatics 5: 29 (2004)

Christiana K. Magkrioti, Ioannis C. Spyropoulos, Vassiliki A. Iconomidou, Judith H. Willis, Stavros J. Hamodrakas: cuticleDB: a relational database of Arthropod cuticular proteins. BMC Bioinformatics 5: 138 (2004)

Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas: A database for G proteins and their interaction with GPCRs. BMC Bioinformatics 5: 208 (2004)

Evanthia E. Pashou, Zoi I. Litou, Theodore Liakopoulos, Stavros J. Hamodrakas: waveTM: Wavelet-based transmembrane segment prediction. In Silico Biology 4 (2004)

Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vassilis J. Promponas, Stavros J. Hamodrakas: PRED-GPCR: GPCR recognition and family classification server. Nucleic Acids Research 32(Web-Server-Issue): 380-382 (2004)

Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas: PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins. Nucleic Acids Research 32(Web-Server-Issue): 400-404 (2004)

Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas: Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation. ICGI 2004: 40-52

Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vassilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis: Evaluation of annotation strategies using an entire genome sequence. Bioinformatics 19(6): 717-726 (2003)

Georgios S. Vernikos, Christos G. Gkogkas, Vassilis J. Promponas, Stavros J. Hamodrakas: GeneViTo: Visualizing gene-product functional and structural features in genomic datasets. BMC Bioinformatics 4: 53 (2003)

Vassilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis: CAST: an iterative algorithm for the complexity analysis of sequence tracts. Bioinformatics 16(10): 915-922 (2000)

C. M. Pasquier, Vassilis J. Promponas, N. J. Varvayannis, Stavros J. Hamodrakas: A web server to locate periodicities in a sequence. Bioinformatics 14(8): 749-750 (1998)

Vassilis J. Promponas, G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, Stavros J. Hamodrakas: CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods. In Silico Biology 1: 14 (1998)

A. Perrakis, C. Constantinides, A. Athanasiades, Stavros J. Hamodrakas: PBM: a software package to create, display and manipulate interactively models of small molecules and proteins on IBM-compatible PCs. Computer Applications in the Biosciences 11(2): 141-145 (1995)

Stavros J. Hamodrakas: A protein secondary structure prediction scheme for the IBM PC and compatibles. Computer Applications in the Biosciences 4(4): 473-477 (1988)