Tsuyoshi Hamada

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada: High performance phylogenetic analysis on CUDA-compatible GPUs. SIGARCH Computer Architecture News 40(5): 52-57 (2012)

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba, Tsuyoshi Hamada: Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns. Computer Physics Communications 182(6): 1272-1283 (2011)

Rainer Spurzem, Peter Berczik, Ingo Berentzen, Keigo Nitadori, Tsuyoshi Hamada, Guillermo Marcus Martinez, Andreas Kugel, Reinhard Männer, J. Fiestas, Robi Banerjee, Ralf Klessen: Astrophysical particle simulations with large custom GPU clusters on three continents. Computer Science - R&D 26(3-4): 145-151 (2011)

Lei Liu, Guillermo Marcus Martinez, Peter Berczik, Tsuyoshi Hamada, Ingo Berentzen, Andreas Kugel, Reinhard Männer, Robi Banerjee, Ralf Klessen, Rainer Spurzem: Astrophysical SPH Simulations with raceSPH Library. CSE 2011: 595-601

Keisuke Dohi, Yuichiro Shibata, Tsuyoshi Hamada, Tomonari Masada, Kiyoshi Oguri, Duncan A. Buell: Implementation of a programming environment with a multithread model for reconfigurable systems. SIGARCH Computer Architecture News 38(4): 40-45 (2010)

Keisuke Dohi, Khaled Benkrid, Cheng Ling, Tsuyoshi Hamada, Yuichiro Shibata: Highly efficient mapping of the Smith-Waterman algorithm on CUDA-compatible GPUs. ASAP 2010: 29-36

Tsuyoshi Hamada, Keigo Nitadori: 190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs. SC 2010: 1-9

Rio Yokota, Tsuyoshi Hamada, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba: Biomolecular Electrostatics Simulation by an FMM-based BEM on 512 GPUs. CoRR abs/1007.4591 (2010)

Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji: A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation. Computer Science - R&D 24(1-2): 21-31 (2009)

Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri: Bayesian Multi-topic Microarray Analysis with Hyperparameter Reestimation. ADMA 2009: 253-264

Kentaro Matsuo, Tsuyoshi Hamada, Masayuki Miyoshi, Yuichiro Shibata, Kiyoshi Oguri: Accelerating Phase Correlation Functions Using GPU and FPGA. AHS 2009: 433-438

Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji: A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation. AHS 2009: 447-452

Tomonari Masada, Daiji Fukagawa, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri: Dynamic hyperparameter optimization for bayesian topical trend analysis. CIKM 2009: 1831-1834

Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri: Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices. IEA/AIE 2009: 491-500

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada: A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs. SASP 2009: 94-100

Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji: 42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence. SC 2009

Tomonari Masada, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri: Bag of Timestamps: A Simple and Efficient Bayesian Chronological Mining. APWeb/WAIM 2009: 556-561

Naohito Nakasato, Tsuyoshi Hamada: Astrophysical Hydrodynamics Simulations on a Reconfigurable System. FCCM 2005: 279-280

Tsuyoshi Hamada, Naohito Nakasato: Massively Parallel Processors Generator for Reconfigurable System. FCCM 2005: 329-330

Tsuyoshi Hamada, Naohito Nakasato: PGR: A Software Package for Reconfigurable Super-Computing. FPL 2005: 366-373

Tsuyoshi Hamada, Toshiyuki Fukushige, Atsushi Kawai, Junichiro Makino: PROGRAPE-1: A Programmable Special-Purpose Computer for Many-Body Simulations. FCCM 1998: 256-257