Ananth Grama

Tobias Berka, Giorgios Kollias, Helge Hagenauer, Marián Vajtersic, Ananth Grama: Concurrent programming constructs for parallel MPI applications - The MPI threads library. The Journal of Supercomputing 63(2): 385-406 (2013)

Anmer Daskin, Ananth Grama, Sabre Kais: A Universal Quantum Circuit Scheme For Finding Complex Eigenvalues of Non-unitary Matrices. CoRR abs/1302.0579 (2013)

Hasan Metin Aktulga, Joseph C. Fogarty, S. A. Pandit, Ananth Grama: Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques. Parallel Computing 38(4-5): 245-259 (2012)

Hasan Metin Aktulga, Sagar Pandit, Adri C. T. van Duin, Ananth Grama: Reactive Molecular Dynamics: Numerical Methods and Algorithmic Techniques. SIAM J. Scientific Computing 34(1) (2012)

Giorgios Kollias, Shahin Mohammadi, Ananth Grama: Network Similarity Decomposition (NSD): A Fast and Scalable Approach to Network Alignment. IEEE Trans. Knowl. Data Eng. 24(12): 2232-2243 (2012)

Anmer Daskin, Ananth Grama, Giorgios Kollias, Sabre Kais: Universal Programmable Quantum Circuit Schemes to Emulate an Operator. CoRR abs/1204.3600 (2012)

Murat Manguoglu, Faisal Saied, Ahmed H. Sameh, Ananth Grama: Performance models for the Spike banded linear system solver. Scientific Programming 19(1): 13-25 (2011)

Giorgios Kollias, Ananth Grama, Zhiyuan Li: Asynchronous Iterative Algorithms. Encyclopedia of Parallel Computing 2011: 87-95

Ananth Grama, Joseph C. Fogarty, Hasan Metin Aktulga, Sagar Pandit: N-Body Computational Methods. Encyclopedia of Parallel Computing 2011: 1259-1268

Jayesh Pandey, Mehmet Koyutürk, Ananth Grama: Functional characterization and topological modularity of molecular interaction networks. BMC Bioinformatics 11(S-1): 35 (2010)

Constantine Bekas, Pasqua D'Ambra, Ananth Grama, Yousef Saad, Petko Yanev: Special issue on Parallel Matrix Algorithms and Applications. Parallel Computing 36(5-6): 213-214 (2010)

Murat Manguoglu, Mehmet Koyutürk, Ahmed H. Sameh, Ananth Grama: Weighted Matrix Ordering and Parallel Banded Preconditioners for Iterative Linear System Solvers. SIAM J. Scientific Computing 32(3): 1201-1216 (2010)

Karthik Kambatla, Naresh Rapolu, Suresh Jagannathan, Ananth Grama: Asynchronous Algorithms in MapReduce. CLUSTER 2010: 245-254

Murat Manguoglu, Faisal Saied, Ahmed H. Sameh, Ananth Grama: Performance Models for the Spike Banded Linear System Solver. ISPDC 2010: 181-188

Bogdan Carbunar, Murali Krishna Ramanathan, Mehmet Koyutürk, Suresh Jagannathan, Ananth Grama: Efficient tag detection in RFID systems. J. Parallel Distrib. Comput. 69(2): 180-196 (2009)

Ananth Grama, Vipin Kumar: Load Balancing for Parallel Optimization Techniques. Encyclopedia of Optimization 2009: 1905-1911

Sanjay Ranka, Srinivas Aluru, Rajkumar Buyya, Yeh-Ching Chung, Sumeet Dua, Ananth Grama, Sandeep K. S. Gupta, Rajeev Kumar, Vir V. Phoha (Eds.): Contemporary Computing - Second International Conference, IC3 2009, Noida, India, August 17-19, 2009. Proceedings. Communications in Computer and Information Science 40, Springer 2009, isbn 978-3-642-03546-3

Ronaldo A. Ferreira, Mehmet Koyutürk, Suresh Jagannathan, Ananth Grama: Semantic indexing in structured peer-to-peer networks. J. Parallel Distrib. Comput. 68(1): 64-77 (2008)

Jayesh Pandey, Mehmet Koyutürk, Shankar Subramaniam, Ananth Grama: Functional coherence in domain interaction networks. ECCB 2008: 28-34

Asad Awan, Suresh Jagannathan, Ananth Grama: Scalable Data Collection in Sensor Networks. HiPC 2008: 415-426

Jayesh Pandey, Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama: Annotating Pathways of Interaction Networks. Pacific Symposium on Biocomputing 2008: 153-165

Murali Krishna Ramanathan, Mehmet Koyutürk, Ananth Grama, Suresh Jagannathan: PHALANX: a graph-theoretic framework for test case prioritization. SAC 2008: 667-673

Murali Krishna Ramanathan, Koushik Sen, Ananth Grama, Suresh Jagannathan: Protocol Inference Using Static Path Profiles. SAS 2008: 78-92

Murali Krishna Ramanathan, Ronaldo A. Ferreira, Suresh Jagannathan, Ananth Grama, Wojciech Szpankowski: Randomized leader election. Distributed Computing 19(5-6): 403-418 (2007)

Hasan Metin Aktulga, Ioannis Kontoyiannis, Leszek Alex Lyznik, Lukasz Szpankowski, Ananth Grama, Wojciech Szpankowski: Identifying Statistical Dependence in Genomic Sequences via Mutual Information Estimates. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama: Assessing Significance of Connectivity and Conservation in Protein Interaction Networks. Journal of Computational Biology 14(6): 747-764 (2007)

Ronaldo A. Ferreira, Murali Krishna Ramanathan, Ananth Grama, Suresh Jagannathan: Randomized Protocols for Duplicate Elimination in Peer-to-Peer Storage Systems. IEEE Trans. Parallel Distrib. Syst. 18(5): 686-696 (2007)

Asad Awan, Suresh Jagannathan, Ananth Grama: Macroprogramming heterogeneous sensor networks using cosmos. EuroSys 2007: 159-172

Asad Awan, Ahmed H. Sameh, Suresh Jagannathan, Ananth Grama: Building Verifiable Sensing Applications Through Temporal Logic Specification. International Conference on Computational Science (1) 2007: 1205-1212

Murali Krishna Ramanathan, Ananth Grama, Suresh Jagannathan: Path-Sensitive Inference of Function Precedence Protocols. ICSE 2007: 240-250

Jayesh Pandey, Mehmet Koyutürk, Yohan Kim, Wojciech Szpankowski, Shankar Subramaniam, Ananth Grama: Functional annotation of regulatory pathways. ISMB/ECCB (Supplement of Bioinformatics) 2007: 377-386

Murali Krishna Ramanathan, Ananth Grama, Suresh Jagannathan: Static specification inference using predicate mining. PLDI 2007: 123-134

Hasan Metin Aktulga, Ioannis Kontoyiannis, Leszek Alex Lyznik, Lukasz Szpankowski, Ananth Grama, Wojciech Szpankowski: Identifying statistical dependence in genomic sequences via mutual information estimates. CoRR abs/0710.5190 (2007)

Jie Chi, Mehmet Koyutürk, Ananth Grama: CONQUEST: A Coarse-Grained Algorithm for Constructing Summaries of Distributed Discrete Datasets. Algorithmica 45(3): 377-401 (2006)

Yohan Kim, Mehmet Koyutürk, Umut Topkara, Ananth Grama, Shankar Subramaniam: Inferring functional information from domain co-evolution. Bioinformatics 22(1): 40-49 (2006)

Mehmet Koyutürk, Yohan Kim, Umut Topkara, Shankar Subramaniam, Wojciech Szpankowski, Ananth Grama: Pairwise Alignment of Protein Interaction Networks. Journal of Computational Biology 13(2): 182-199 (2006)

Mehmet Koyutürk, Yohan Kim, Shankar Subramaniam, Wojciech Szpankowski, Ananth Grama: Detecting Conserved Interaction Patterns in Biological Networks. Journal of Computational Biology 13(7): 1299-1322 (2006)

Ronaldo A. Ferreira, Suresh Jagannathan, Ananth Grama: Locality in structured peer-to-peer networks. J. Parallel Distrib. Comput. 66(2): 257-273 (2006)

Asad Awan, Ronaldo A. Ferreira, Suresh Jagannathan, Ananth Grama: Unstructured peer-to-peer networks for sharing processor cycles. Parallel Computing 32(2): 115-135 (2006)

Mehmet Koyutürk, Ananth Grama, Naren Ramakrishnan: Nonorthogonal decomposition of binary matrices for bounded-error data compression and analysis. ACM Trans. Math. Softw. 32(1): 33-69 (2006)

Bogdan Carbunar, Ananth Grama, Jan Vitek, Octavian Carbunar: Redundancy and coverage detection in sensor networks. TOSN 2(1): 94-128 (2006)

Murali Krishna Ramanathan, Suresh Jagannathan, Ananth Grama: Trace-Based Memory Aliasing Across Program Versions. FASE 2006: 381-395

Asad Awan, Ronaldo A. Ferreira, Suresh Jagannathan, Ananth Grama: Distributed Uniform Sampling in Unstructured Peer-to-Peer Networks. HICSS 2006

Asad Awan, Ahmed H. Sameh, Ananth Grama: The Omni Macroprogramming Environment for Sensor Networks. International Conference on Computational Science (3) 2006: 465-472

Murali Krishna Ramanathan, Ananth Grama, Suresh Jagannathan: Sieve: A Tool for Automatically Detecting Variations Across Program Versions. ASE 2006: 241-252

Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski: Assessing Significance of Connectivity and Conservation in Protein Interaction Networks. RECOMB 2006: 45-59

Ioannis Ioannidis, Ananth Grama: Level compressed DAGs for lookup tables. Computer Networks 49(2): 147-160 (2005)

Ioannis Ioannidis, Ananth Grama, Mikhail J. Atallah: Adaptive data structures for IP lookups. ACM Journal of Experimental Algorithmics 10 (2005)

Mehmet Koyutürk, Ananth Grama, Naren Ramakrishnan: Compression, Clustering, and Pattern Discovery in Very High-Dimensional Discrete-Attribute Data Sets. IEEE Trans. Knowl. Data Eng. 17(4): 447-461 (2005)

Christoph Hoffmann, Ahmed H. Sameh, Ananth Grama: High-Fidelity Simulation of Large-Scale Structures. International Conference on Computational Science (2) 2005: 664-671

Ronaldo A. Ferreira, Murali Krishna Ramanathan, Asad Awan, Ananth Grama, Suresh Jagannathan: Search with Probabilistic Guarantees in Unstructured Peer-to-Peer Networks. Peer-to-Peer Computing 2005: 165-172

Ronaldo A. Ferreira, Murali Krishna Ramanathan, Ananth Grama, Suresh Jagannathan: Randomized Protocols for Duplicate Elimination in Peer-to-Peer Storage Systems. Peer-to-Peer Computing 2005: 201-208

Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski: Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution. RECOMB 2005: 48-65

Bogdan Carbunar, Murali Krishna Ramanathan, Mehmet Koyutürk, Christoph Hoffmann, Ananth Grama: Redundant reader elimination in RFID systems. SECON 2005: 176-184

Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama: Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns. CSB 2004: 480-484

Ronaldo A. Ferreira, Ananth Grama, Suresh Jagannathan: Plethora: An EfficientWide-Area Storage System. HiPC 2004: 252-261

Hemant Mahawar, Vivek Sarin, Ananth Grama: Parallel Performance of Hierarchical Multipole Algorithms for Inductance Extraction. HiPC 2004: 450-461

Athanasios C. Antoulas, Danny C. Sorensen, Kyle A. Gallivan, Paul Van Dooren, Ananth Grama, Christoph Hoffmann, Ahmed H. Sameh: Model Reduction of Large-Scale Dynamical Systems. International Conference on Computational Science 2004: 740-747

Shan Lei, Ananth Grama: Extended Consistent Hashing: An Efficient Framework for Object Location. ICDCS 2004: 254-262

Bogdan Carbunar, Ioannis Ioannidis, Ananth Grama, Jan Vitek: A Secure Crediting Protocol for Hybrid Cellular and Ad-Hoc Networks. ICETE (3) 2004: 142-149

Ronaldo A. Ferreira, Suresh Jagannathan, Ananth Grama: Enhancing Locality in Structured Peer-to-Peer Networks. ICPADS 2004: 25-

Bogdan Carbunar, Ananth Grama, Jan Vitek: Distributed and Dynamic Voronoi Overlays for Coverage Detection and Distributed Hash Tables in Ad-Hoc Networks. ICPADS 2004: 549-

Ananth Grama, Vivek Sarin: Impact of far-field interactions on performance of multipole-based preconditioners for sparse linear systems. ICS 2004: 41-47

Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski: An efficient algorithm for detecting frequent subgraphs in biological networks. ISMB/ECCB (Supplement of Bioinformatics) 2004: 200-207

Jie Chi, Mehmet Koyutürk, Ananth Grama: Conquest: A Distributed Tool for Constructing Summaries of High-Dimensional Discrete Attribute Data Sets. SDM 2004

Bogdan Carbunar, Ananth Grama, Jan Vitek, Octavian Carbunar: Coverage preserving redundancy elimination in sensor networks. SECON 2004: 377-386

Sreekanth R. Sambavaram, Vivek Sarin, Ahmed H. Sameh, Ananth Grama: Multipole-based preconditioners for large sparse linear systems. Parallel Computing 29(9): 1261-1273 (2003)

Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski: Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments. CSB 2003: 575-580

Ronaldo A. Ferreira, Ananth Grama, Suresh Jagannathan: An IP address based caching scheme for peer-to-peer networks. GLOBECOM 2003: 3845-3850

Ioannis Ioannidis, Ananth Grama: An Efficient Protocol for Yao?s Millionaires? Problem. HICSS 2003: 205

Mohamed F. Mokbel, Walid G. Aref, Ananth Grama: Spectral LPM: An Optimal Locality-Preserving Mapping using the Spectral (not Fractal) Order. ICDE 2003: 699-701

Ioannis Ioannidis, Ananth Grama, Mikhail J. Atallah: Adaptive Data Structures for IP Lookups. INFOCOM 2003

Mehmet Koyutürk, Ananth Grama: PROXIMUS: a framework for analyzing very high dimensional discrete-attributed datasets. KDD 2003: 147-156

Marc Alzina, Wojciech Szpankowski, Ananth Grama: 2D-pattern matching image and video compression: theory, algorithms, and experiments. IEEE Transactions on Image Processing 11(3): 318-331 (2002)

Sacha Zyto, Ananth Grama, Wojciech Szpankowski: Semi-discrete Matrix Transforms (SDD) for Image and Video Compression. DCC 2002: 484

Jie Chi, Alok R. Chaturvedi, Ananth Grama, Shailendra Raj Mehta: Oceanus: A Distributed Web-Based Framework for Execution of Genetic Algorithms. GECCO Late Breaking Papers 2002: 55-61

Ioannis Ioannidis, Ananth Grama, Mikhail J. Atallah: A Secure Protocol for Computing Dot-Products in Clustered and Distributed Environments. ICPP 2002: 379-384

Tzvetan Horozov, Ananth Grama, Venu Vasudevan, Sean Landis: MOBY - A Mobile Peer-to-Peer Service and Data Network. ICPP 2002: 437-444

Mehmet Koyutürk, Ananth Grama, Naren Ramakrishnan: Algebraic Techniques for Analysis of Large Discrete-Valued Datasets. PKDD 2002: 311-324

Naren Ramakrishnan, Ananth Grama: Mining scientific data. Advances in Computers 55: 119-169 (2001)

Naren Ramakrishnan, Benjamin J. Keller, Batul J. Mirza, Ananth Grama, George Karypis: Privacy Risks in Recommender Systems. IEEE Internet Computing 5(6): 54-62 (2001)

Dow-Yung Yang, Ananth Grama, Vivek Sarin, Naren Ramakrishnan: Compression of particle data from hierarchical approximate methods. ACM Trans. Math. Softw. 27(3): 317-339 (2001)

Ananth Grama, David Meyer, Wojciech Szpankowski: Real-Time Decompression of Streaming Video Using Mobile Code. Data Compression Conference 2001: 496

Ananth Grama, Vipin Kumar, Sanjay Ranka, Vineet Singh: Architecture Independent Analysis of Parallel Programs. International Conference on Computational Science (2) 2001: 599-608

Naren Ramakrishnan, Benjamin J. Keller, Batul J. Mirza, Ananth Grama, George Karypis: When being Weak is Brave: Privacy in Recommender Systems. CoRR cs.CG/0105028 (2001)

Dow-Yung Yang, Akshay Johar, Ananth Grama, Wojciech Szpankowski: Summary Structures for Frequency Queries on Large Transaction Sets. Data Compression Conference 2000: 420-429

Naren Ramakrishnan, Ananth Grama: Data Mining: From Serendipity to Science - Guest Editors' Introduction. IEEE Computer 32(8): 34-37 (1999)

Ananth Grama, Vipin Kumar: State of the Art in Parallel Search Techniques for Discrete Optimization Problems. IEEE Trans. Knowl. Data Eng. 11(1): 28-35 (1999)

Marc Alzina, Wojciech Szpankowski, Ananth Grama: 2D-Pattern Matching Image and Video Compression. Data Compression Conference 1999: 424-433

Dow-Yung Yang, Ananth Grama, Vivek Sarin: Bounded-Error Compression of Particle Data from Hierarchical Approximate Methods. SC 1999: 32

Ananth Grama, Vipin Kumar, Ahmed H. Sameh: Scalable Parallel Formulations of the Barnes-Hut Method for n-Body Simulations. Parallel Computing 24(5-6): 797-822 (1998)

Vivek Sarin, Ananth Grama, Ahmed H. Sameh: Analyzing the Error Bounds of Multipole-Based Treecodes. SC 1998: 19

Vipin Kumar, George Karypis, Ananth Grama: Role of Message-Passing in Performance Oriented Parallel Programming. PPSC 1997

Ananth Grama, Vipin Kumar: Parallel Search Algorithms for Discrete Optimization Problems. INFORMS Journal on Computing 7(4): 365-385 (1995)

Ananth Grama, Vipin Kumar, Ahmed H. Sameh: N-Body Simulations Using Message Passsing Parallel Computers. PPSC 1995: 355-360

Ananth Grama, Vipin Kumar, Ahmed H. Sameh: Parallel Matrix-Vector Product Using Approximate Hierarchical Methods. SC 1995: 75

Vipin Kumar, Ananth Grama, Anshul Gupta, George Karypis: Introduction to Parallel Computing. Benjamin/Cummings 1994, isbn 0-8053-3170-0

Vipin Kumar, Ananth Grama, Nageshwara Rao Vempaty: Scalable Load Balancing Techniques for Parallel Computers. J. Parallel Distrib. Comput. 22(1): 60-79 (1994)

Ananth Grama, Vipin Kumar, Ahmed H. Sameh: Scalable parallel formulations of the Barnes-Hut method for n-body simulations. SC 1994: 439-448

Ananth Grama, Vipin Kumar: Scalability Analysis of Partitioning Strategies for Finite Element Graphs: A Summary of Results. SC 1992: 83-92