Robert S. Germain

Ruhong Zhou, Maria Eleftheriou, Chung-Chau Hon, Robert S. Germain, Ajay K. Royyuru, Bruce J. Berne: Massively parallel molecular dynamics simulations of lysozyme unfolding. IBM Journal of Research and Development 52(1-2): 19-30 (2008)

Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Michael Pitman, Jed W. Pitera, William C. Swope, Robert S. Germain: Blue Matter: Scaling of N-body simulations to one atom per node. IBM Journal of Research and Development 52(1-2): 145-158 (2008)

Maria Eleftheriou, Blake G. Fitch, Aleksandr Rayshubskiy, T. J. Christopher Ward, Philip Heidelberger, Robert S. Germain: A study of the effects of machine geometry and mapping on distributed transpose performance. Conf. Computing Frontiers 2008: 79-86

Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Michael Pitman, Robert S. Germain: Progress in Scaling Biomolecular Simulations to Petaflop Scale Platforms. Euro-Par Workshops 2006: 279-288

Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Yuriy Zhestkov, Michael Pitman, Frank Suits, Alan Grossfield, Jed W. Pitera, William C. Swope, Ruhong Zhou, Scott Feller, Robert S. Germain: Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. International Conference on Computational Science (2) 2006: 846-854

Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. Pitera, Blake G. Fitch, Ruhong Zhou, Robert S. Germain: Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L. IPDPS 2006

Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Michael Pitman, Robert S. Germain: Molecular dynamics - Blue matter: approaching the limits of concurrency for classical molecular dynamics. SC 2006: 87

Robert S. Germain, Yuriy Zhestkov, Maria Eleftheriou, Aleksandr Rayshubskiy, Frank Suits, T. J. Christopher Ward, Blake G. Fitch: Early performance data on the Blue Matter molecular simulation framework. IBM Journal of Research and Development 49(2-3): 447-456 (2005)

Maria Eleftheriou, Blake G. Fitch, Aleksandr Rayshubskiy, T. J. Christopher Ward, Robert S. Germain: Scalable framework for 3D FFTs on the Blue Gene/L supercomputer: Implementation and early performance measurements. IBM Journal of Research and Development 49(2-3): 457-464 (2005)

Robert F. Enenkel, Blake G. Fitch, Robert S. Germain, Fred G. Gustavson, A. Martin, Mark P. Mendell, Jed W. Pitera, Michael Pitman, Aleksandr Rayshubskiy, Frank Suits, William C. Swope, T. J. Christopher Ward: Custom math functions for molecular dynamics. IBM Journal of Research and Development 49(2-3): 465-474 (2005)

Frank Suits, Michael Pitman, Jed W. Pitera, William C. Swope, Robert S. Germain: Overview of molecular dynamics techniques and early scientific results from the Blue Gene project. IBM Journal of Research and Development 49(2-3): 475-488 (2005)

Robert S. Germain, Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, Michael Pitman, Frank Suits, Mark Giampapa, T. J. Christopher Ward: Blue matter on blue gene/L: massively parallel computation for biomolecular simulation. CODES+ISSS 2005: 207-212

George S. Almasi, Gyan Bhanot, Dong Chen, Maria Eleftheriou, Blake G. Fitch, Alan Gara, Robert S. Germain, John A. Gunnels, Manish Gupta, Philip Heidelberger, Michael Pitman, Aleksandr Rayshubskiy, James C. Sexton, Frank Suits, Pavlos Vranas, Robert Walkup, T. J. Christopher Ward, Yuriy Zhestkov, Alessandro Curioni, Wanda Andreoni, Charles Archer, José E. Moreira, Richard Loft, Henry M. Tufo, Theron Voran, Katherine Riley: Early Experience with Scientific Applications on the Blue Gene/L Supercomputer. Euro-Par 2005: 560-570

Maria Eleftheriou, Blake G. Fitch, Aleksandr Rayshubskiy, T. J. Christopher Ward, Robert S. Germain: Performance Measurements of the 3D FFT on the Blue Gene/L Supercomputer. Euro-Par 2005: 795-803

Toshikazu Ebisuzaki, Robert S. Germain, Makoto Taiji: PetaFLOPS computing. Commun. ACM 47(11): 42-45 (2004)

Blake G. Fitch, Robert S. Germain, Mark P. Mendell, Jed W. Pitera, Michael Pitman, Aleksandr Rayshubskiy, Yuk Yin Sham, Frank Suits, William C. Swope, T. J. Christopher Ward, Yuriy Zhestkov, Ruhong Zhou: Blue Matter, an application framework for molecular simulation on Blue Gene. J. Parallel Distrib. Comput. 63(7-8): 759-773 (2003)

Maria Eleftheriou, José E. Moreira, Blake G. Fitch, Robert S. Germain: A Volumetric FFT for BlueGene/L. HiPC 2003: 194-203

George Almási, Daniel K. Beece, Ralph Bellofatto, Gyan Bhanot, Randy Bickford, Matthias A. Blumrich, Arthur A. Bright, José R. Brunheroto, Calin Cascaval, José G. Castaños, Luis Ceze, Paul Coteus, Siddhartha Chatterjee, Dong Chen, George L.-T. Chiu, Thomas M. Cipolla, Paul Crumley, Alina Deutsch, Marc Boris Dombrowa, Wilm E. Donath, Maria Eleftheriou, Blake G. Fitch, Joseph Gagliano, Alan Gara, Robert S. Germain, Mark Giampapa, Manish Gupta, Fred G. Gustavson, Shawn Hall, Ruud A. Haring, David F. Heidel, Philip Heidelberger, Lorraine Herger, Dirk Hoenicke, T. Jamal-Eddine, Gerard V. Kopcsay, Alphonso P. Lanzetta, Derek Lieber, M. Lu, Mark P. Mendell, Lawrence S. Mok, José E. Moreira, Ben J. Nathanson, Matthew Newton, Martin Ohmacht, Rick A. Rand, Richard D. Regan, Ramendra K. Sahoo, Alda Sanomiya, Eugen Schenfeld, Sarabjeet Singh, Peilin Song, Burkhard D. Steinmacher-Burow, Karin Strauss, Richard A. Swetz, Todd Takken, R. Brett Tremaine, Mickey Tsao, Pavlos Vranas, T. J. Christopher Ward, Michael E. Wazlowski, J. Brown, Thomas A. Liebsch, A. Schram, G. Ulsh: Blue Gene/L, a System-On-A-Chip. CLUSTER 2002: 349-

Narasimha R. Adiga, George Almási, Yariv Aridor, Rajkishore Barik, Daniel K. Beece, Ralph Bellofatto, Gyan Bhanot, Randy Bickford, Matthias A. Blumrich, Arthur A. Bright, José R. Brunheroto, Calin Cascaval, José G. Castaños, Waiman Chan, Luis Ceze, Paul Coteus, Siddhartha Chatterjee, Dong Chen, George L.-T. Chiu, Thomas M. Cipolla, Paul Crumley, K. M. Desai, Alina Deutsch, Tamar Domany, Marc Boris Dombrowa, Wilm E. Donath, Maria Eleftheriou, C. Christopher Erway, J. Esch, Blake G. Fitch, Joseph Gagliano, Alan Gara, Rahul Garg, Robert S. Germain, Mark Giampapa, Balaji Gopalsamy, John A. Gunnels, Manish Gupta, Fred G. Gustavson, Shawn Hall, Ruud A. Haring, David F. Heidel, Philip Heidelberger, Lorraine Herger, Dirk Hoenicke, R. D. Jackson, T. Jamal-Eddine, Gerard V. Kopcsay, Elie Krevat, Manish P. Kurhekar, Alphonso P. Lanzetta, Derek Lieber, L. K. Liu, M. Lu, Mark P. Mendell, A. Misra, Y. Moatti, Lawrence S. Mok, José E. Moreira, Ben J. Nathanson, Matthew Newton, Martin Ohmacht, Adam J. Oliner, Vinayaka Pandit, R. B. Pudota, Rick A. Rand, Richard D. Regan, Bradley Rubin, Albert E. Ruehli, Silvius Rus, Ramendra K. Sahoo, Alda Sanomiya, Eugen Schenfeld, M. Sharma, Edi Shmueli, Sarabjeet Singh, Peilin Song, Vijay Srinivasan, Burkhard D. Steinmacher-Burow, Karin Strauss, Christopher W. Surovic, Richard A. Swetz, Todd Takken, R. Brett Tremaine, Mickey Tsao, Arun R. Umamaheshwaran, P. Verma, Pavlos Vranas, T. J. Christopher Ward, Michael E. Wazlowski, W. Barrett, C. Engel, B. Drehmel, B. Hilgart, D. Hill, F. Kasemkhani, David J. Krolak, C. T. Li, Thomas A. Liebsch, James A. Marcella, A. Muff, A. Okomo, M. Rouse, A. Schram, M. Tubbs, G. Ulsh, Charles D. Wait, J. Wittrup, M. Bae, Kenneth A. Dockser, Lynn Kissel, Mark K. Seager, Jeffrey S. Vetter, K. Yates: An overview of the BlueGene/L Supercomputer. SC 2002: 1-22

Frances E. Allen, George S. Almasi, Wanda Andreoni, Daniel K. Beece, Bruce J. Berne, Arthur A. Bright, José R. Brunheroto, Calin Cascaval, José G. Castaños, Paul Coteus, Paul Crumley, Alessandro Curioni, Monty Denneau, Wilm E. Donath, Maria Eleftheriou, Blake G. Fitch, Bruce M. Fleischer, Christos J. Georgiou, Robert S. Germain, Mark Giampapa, Donna L. Gresh, Manish Gupta, Ruud A. Haring, C. T. Howard Ho, Peter H. Hochschild, Susan Flynn Hummel, Tiziana Jonas, Derek Lieber, Glenn J. Martyna, Kiran K. Maturu, José E. Moreira, Dennis M. Newns, Matthew Newton, Robert Philhower, Thomas Picunko, Jed W. Pitera, Michael Pitman, Rick A. Rand, Ajay K. Royyuru, Valentina Salapura, Alda Sanomiya, Rahul S. Shah, Yuk Yin Sham, Sarabjeet Singh, Marc Snir, Frank Suits, Richard A. Swetz, William C. Swope, Nagesh K. Vishnumurthy, T. J. Christopher Ward, Henry S. Warren Jr., Ruhong Zhou: Blue Gene: A vision for protein science using a petaflop supercomputer. IBM Systems Journal 40(2): 310-327 (2001)