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 | 2013 | |
|---|---|---|
| j9 |      | Nurcan Tuncbag, Alfredo Braunstein, Andrea Pagnani, Shao-Shan Carol Huang, Jennifer T. Chayes, Christian Borgs, Riccardo Zecchina, Ernest Fraenkel: Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. Journal of Computational Biology 20(2): 124-136 (2013) |
| 2012 | ||
| j8 | | Nurcan Tuncbag, Scott McCallum, Shao-Shan Carol Huang, Ernest Fraenkel: SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways. Nucleic Acids Research 40(Web-Server-Issue): 505-509 (2012) |
| c4 | | Nurcan Tuncbag, Alfredo Braunstein, Andrea Pagnani, Shao-Shan Carol Huang, Jennifer T. Chayes, Christian Borgs, Riccardo Zecchina, Ernest Fraenkel: Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. RECOMB 2012: 287-301 |
| 2011 | ||
| j7 | | Alex Lan, Ilan Y. Smoly, Guy Rapaport, Susan Lindquist, Ernest Fraenkel, Esti Yeger Lotem: ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data. Nucleic Acids Research 39(Web-Server-Issue): 424-429 (2011) |
| 2010 | ||
| j6 | | Kenzie D. MacIsaac, Kinyui A. Lo, William Gordon, Shmulik Motola, Tali Mazor, Ernest Fraenkel: A Quantitative Model of Transcriptional Regulation Reveals the Influence of Binding Location on Expression. PLoS Computational Biology 6(4) (2010) |
| 2008 | ||
| c3 | | Martha L. Bulyk, Ernest Fraenkel, Alexander J. Hartemink, Yael Mandel-Gutfreund: Session Introduction. Pacific Symposium on Biocomputing 2008: 438-440 |
| 2007 | ||
| j5 | | Katherine A. Romer, Guy-Richard Kayombya, Ernest Fraenkel: WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches. Nucleic Acids Research 35(Web-Server-Issue): 217-220 (2007) |
| c2 | | Martha L. Bulyk, Alexander J. Hartemink, Ernest Fraenkel, Gary D. Stormo: Session Introduction. Pacific Symposium on Biocomputing 2007: 470-471 |
| 2006 | ||
| j4 | | Kenzie D. MacIsaac, D. Benjamin Gordon, Lena Nekludova, Duncan T. Odom, Joerg Schreiber, David K. Gifford, Richard A. Young, Ernest Fraenkel: A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data. Bioinformatics 22(4): 423-429 (2006) |
| j3 | | Kenzie D. MacIsaac, Ting Wang, D. Benjamin Gordon, David K. Gifford, Gary D. Stormo, Ernest Fraenkel: An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7: 113 (2006) |
| j2 | | Kenzie D. MacIsaac, Ernest Fraenkel: Practical Strategies for Discovering Regulatory DNA Sequence Motifs. PLoS Computational Biology 2(4) (2006) |
| 2005 | ||
| j1 | | D. Benjamin Gordon, Lena Nekludova, Scott McCallum, Ernest Fraenkel: TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs. Bioinformatics 21(14): 3164-3165 (2005) |
| c1 | | Susan Lindquist, Ernest Fraenkel, Tiago Outeiro, Aaron Gitler, Julie Su, Anil Cashikar, Smitha Jagadish: Yeast Cells as a Discovery Platform for Neurodegenerative Disease. RECOMB 2005: 102-102 |
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