Yuriy Fofanov

Georgiy Golovko, Kamil Khanipov, Mark Rojas, Antonio Martínez-Alcántara, Jesse J. Howard, Efren Ballesteros, Sharu Gupta, William Widger, Yuriy Fofanov: Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation. BMC Bioinformatics 13: 166 (2012)

Stephen Huff, Mark Rojas, Paul Havlak, Yuriy Fofanov: Co-Evolution of the Influenza Virus and Its Hosts. BIOCOMP 2010: 339-342

Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov: PIQA: pipeline for Illumina G1 genome analyzer data quality assessment. Bioinformatics 25(18): 2438-2439 (2009)

Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov: Effect of the mutation rate and background size on the quality of pathogen identification. Bioinformatics 23(20): 2665-2671 (2007)

Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov: Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes. BIOCOMP 2007: 760-766

Chen Feng, Catherine Putonti, Michael Quance, Stephen Huff, Andrey Belokrylov, S. Lennart Johnsson, Krishna Jayaraman, Michael Hogan, Yuriy Fofanov: Developing Assays for the Detection of Influenza in Human Samples. BIOCOMP 2007: 781-

Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox: A parallel computing algorithm for 16S rRNA probe design. J. Parallel Distrib. Comput. 66(12): 1546-1551 (2006)

Catherine Putonti, Meizhuo Zhang, S. Lennart Johnsson, Yuriy Fofanov: Two Challenges in Genomics That Can Benefit from Petascale Platforms. Euro-Par Workshops 2006: 313-322

Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox: ProkProbePicker (PPP): a Fast Program to Extract 16S rRNA-Targeted Probes for Prokaryotes. METMBS 2005: 41-47

Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt: How independent are the appearances of n-mers in different genomes? Bioinformatics 20(15): 2421-2428 (2004)

Catherine Putonti, Yuriy Fofanov: Analysis of Promoter Regions for Essential Genes of Bacillus subtilis for Using PIDA. METMBS 2004: 276-282

Sergei Chumakov, Catherine Putonti, B. Montgomery Pettitt, George E. Fox, Richard C. Willson, Yuriy Fofanov: Using Statistical Properties of Short Subsequences in Microbial Identification. METMBS 2004: 363-370

Yuriy Fofanov, B. Montgomery Pettitt: Reconstruction of the genetic regulatory dynamics of the rat spinal cord development: Local Invariants approach. Journal of Biomedical Informatics 35(5-6): 343-351 (2002)