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Michel Dumontier
2010 – today
- 2013
[j22]Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis, Miguela Iniesta-Moreno, Michel Dumontier, Mikel Egaña Aranguren, Stefan Schulz, Nathalie Aussenac-Gilles, Robert Stevens: Evaluation of the OQuaRE framework for ontology quality. Expert Syst. Appl. 40(7): 2696-2703 (2013)- [j21]Tudor Groza, Tania Tudorache, Michel Dumontier: State of the art and open challenges in community-driven knowledge curation. Journal of Biomedical Informatics 46(1): 1-4 (2013)
- [c26]Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Michel Dumontier: Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data. ESWC 2013: 200-212
- [c25]Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce: An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. MedInfo 2013: 539-542
- [c24]Jose Cruz-Toledo, Alison Callahan, Michel Dumontier: A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology. ORE 2013: 134-139
- [i3]Alison Callahan, Michel Dumontier: Ovopub: Modular data publication with minimal provenance. CoRR abs/1305.6800 (2013)
- 2012
- [j20]Marc-Alexandre Nolin, Michel Dumontier, François Belleau, Jacques Corbeil: Building an HIV data mashup using Bio2RDF. Briefings in Bioinformatics 13(1): 98-106 (2012)
- [j19]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos: Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. Bioinformatics 28(16): 2169-2175 (2012)
- [j18]Leonid L. Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier: Self-organizing ontology of biochemically relevant small molecules. BMC Bioinformatics 13: 3 (2012)
- [j17]Michel Dumontier, David J. Wild: Linked Data in Drug Discovery. IEEE Internet Computing 16(6): 68-71 (2012)
- [c23]Alison Callahan, Michel Dumontier: Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation. ESWC 2012: 647-658
- [c22]Christian Boelling, Michel Dumontier, Michael Weidlich, Hermann-Georg Holzhütter: Role-based representation and inference of biochemical processes. ICBO 2012
- [c21]Michel Dumontier: Molecular Symmetry and Specialization of Atomic Connectivity by Class-based Reasoning of Chemical Structure. OWLED 2012
- [c20]Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Dana Klassen, Giovanni Tumarello, Michel Dumontier: Improved Dataset Coverage and Interoperability with Bio2RDF Release 2. SWAT4LS 2012
- [c19]Andrea Splendiani, Johan Nystromm-Persson, Michel Dumontier, Yasunori Yamamoto: YummyData: Measuring the "Sparkliness" of Biomedical Sparql Endpoints. SWAT4LS 2012
- [i2]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos: Towards quantitative measures in applied ontology. CoRR abs/1202.3602 (2012)
- 2011
- [j16]Robert Hoehndorf, Colin R. Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris Mungall, Jane S. Richardson, Jesse Stombaugh, Eric Westhof, Craig L. Zirbel, Neocles Leontis: The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data. Applied Ontology 6(1): 53-89 (2011)
- [j15]Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos: A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinformatics 27(7): 1001-1008 (2011)
- [j14]Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker: Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinformatics 12: 303 (2011)
- [j13]Alexander Gawronski, Michel Dumontier: MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets. Computers & Graphics 35(4): 823-830 (2011)
- [j12]Leonid L. Chepelev, Michel Dumontier: Semantic Web integration of Cheminformatics resources with the SADI framework. J. Cheminformatics 3: 16 (2011)
- [j11]Leonid L. Chepelev, Michel Dumontier: Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration. J. Cheminformatics 3: 20 (2011)
- [j10]
- [c18]Matthias Samwald, Holger Stenzhorn, Michel Dumontier, M. Scott Marshall, Joanne Luciano, Klaus-Peter Adlassnig: Towards an Interoperable Information Infrastructure Providing Decision Support for Genomic Medicine. MIE 2011: 165-169
- [c17]Leonid L. Chepelev, Dana Klassen, Michel Dumontier: Chemical Hazard Estimation and Method Comparison with OWL-Encoded Toxicity Decision Trees. OWLED 2011
- [e1]Michel Dumontier, Mélanie Courtot (Eds.): Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), San Francisco, California, USA, June 5-6, 2011. CEUR Workshop Proceedings 796, CEUR-WS.org 2011
- [i1]Matthias Samwald, Holger Stenzhorn, Michel Dumontier, M. Scott Marshall, Joanne Luciano, Klaus-Peter Adlassnig: Towards an interoperable information infrastructure providing decision support for genomic medicine. CoRR abs/1109.6626 (2011)
- 2010
- [j9]Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre: Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinformatics 11: 441 (2010)
- [j8]Michel Dumontier: Building an effective Semantic Web for health care and the life sciences. Semantic Web 1(1-2): 131-135 (2010)
- [j7]Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales: Modeling and querying graphical representations of statistical data. J. Web Sem. 8(2-3): 241-254 (2010)
- [c16]
- [c15]Janna Hastings, Michel Dumontier, Duncan Hull, Matthew Horridge, Christoph Steinbeck, Robert Stevens, Ulrike Sattler, Tertia Hörne, Katarina Britz: Representing Chemicals Using OWL, Description Graphs and Rules. OWLED 2010
- [c14]Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann: Relational Patterns in OWL and Their Application to OBO. OWLED 2010
2000 – 2009
- 2009
- [j6]Michel Dumontier, Natalia Villanueva-Rosales: Towards pharmacogenomics knowledge discovery with the semantic web. Briefings in Bioinformatics 10(2): 153-163 (2009)
- [c13]James R. Green, Hanan Mahmoud, Michel Dumontier: Modeling tryptic digestion on the Cell BE processor. CCECE 2009: 701-705
- [c12]Jose Cruz-Toledo, Alexander De Leon Battista, Michel Dumontier: PDB2RDF - Exposing Molecular and Experimental Knowledge on the Semantic Web. I-SEMANTICS 2009
- [c11]Alexander De Leon Battista, Michel Dumontier: A Platform for Reasoning with OWL-EL Knowledge Bases in a Peer-to-Peer Environment. OWLED 2009
- [c10]Xueying Chen, Michel Dumontier: Conjunctive Query Answering in Distributed Ontology Systems for Ontologies with Large OWL ABoxes. OWLED 2009
- 2008
- [j5]Natalia Villanueva-Rosales, Michel Dumontier: yOWL: An ontology-driven knowledge base for yeast biologists. Journal of Biomedical Informatics 41(5): 779-789 (2008)
- [c9]Mykola Konyk, Alexander De Leon Battista, Michel Dumontier: Chemical Knowledge for the Semantic Web. DILS 2008: 169-176
- [c8]Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales: Semantic Annotation and Question Answering of Statistical Graphs. MICAI 2008: 100-110
- [c7]Michel Dumontier: Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions. OWLED 2008
- [c6]Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang: Report on semantic web for health care and life sciences workshop. WWW 2008: 1273-1274
- 2007
- [c5]Leo Ferres, Michel Dumontier, Natalia Villanueva-Rosales: Semantic Query Answering with Time-Series Graphs. EDOCW 2007: 117-124
- [c4]
- [c3]Natalia Villanueva-Rosales, Michel Dumontier: Describing Chemical Functional Groups in OWL-DL for the Classification of Chemical Compounds. OWLED 2007
- [c2]Laurier Boulianne, Michel Dumontier, Warren J. Gross: A stochastic particle-based biological system simulator. SCSC 2007: 794-801
- [c1]Alexander De Leon Battista, Natalia Villanueva-Rosales, Myroslav Palenychka, Michel Dumontier: SMART: A Web-Based, Ontology-Driven, Semantic Web Query Answering Application. Semantic Web Challenge 2007
- 2006
- [j4]Kevin A. Snyder, Howard J. Feldman, Michel Dumontier, John J. Salama, Christopher W. V. Hogue: Domain-based small molecule binding site annotation. BMC Bioinformatics 7: 152 (2006)
- 2002
- [j3]Michel Dumontier, Christopher W. V. Hogue: NBLAST: a cluster variant of BLAST for NxN comparisons. BMC Bioinformatics 3: 13 (2002)
- [j2]Katerina Michalickova, Gary D. Bader, Michel Dumontier, Hao Lieu, Doron Betel, Ruth Isserlin, Christopher W. V. Hogue: SeqHound: biological sequence and structure database as a platform for bioinformatics research. BMC Bioinformatics 3: 32 (2002)
- [j1]Michel Dumontier, Katerina Michalickova, Christopher W. V. Hogue: Species-specific protein sequence and fold optimizations. BMC Bioinformatics 3: 39 (2002)
Coauthor Index
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last updated on 2013-10-02 11:24 CEST by the dblp team