Aalt D. J. van Dijk

Yiannis Kourmpetis, Aalt D. J. van Dijk, Cajo J. F. ter Braak: Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes. Algorithms for Molecular Biology 8: 10 (2013)

Janrdanan Sreekumar, Cajo J. F. ter Braak, Roeland C. H. J. van Ham, Aalt D. J. van Dijk: Correlated mutations via regularized multinomial regression. BMC Bioinformatics 12: 444 (2011)

Jose M. Muiño, Marlous Hoogstraat, Roeland C. H. J. van Ham, Aalt D. J. van Dijk: PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments. Nucleic Acids Research 39(Web-Server-Issue): 524-527 (2011)

Peter Boyen, Dries Van Dyck, Frank Neven, Roeland C. H. J. van Ham, Aalt D. J. van Dijk: SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 8(5): 1344-1357 (2011)

Aalt D. J. van Dijk, Giuseppa Morabito, Martijn Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink: Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction. PLoS Computational Biology 6(11) (2010)

Aalt D. J. van Dijk, Cajo J. F. ter Braak, Richard G. H. Immink, Gerco C. Angenent, Roeland C. H. J. van Ham: Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control. Bioinformatics 24(1): 26-33 (2008)

Aalt D. J. van Dijk, D. Bosch, Cajo J. F. ter Braak, A. R. van der Krol, Roeland C. H. J. van Ham: Predicting sub-Golgi localization of type II membrane proteins. Bioinformatics 24(16): 1779-1786 (2008)

Aalt D. J. van Dijk, Alexandre M. J. J. Bonvin: Solvated docking: introducing water into the modelling of biomolecular complexes. Bioinformatics 22(19): 2340-2347 (2006)