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Charles DeLisi
2010 – today
- 2012
[j22]Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi: Gene set enrichment analysis: performance evaluation and usage guidelines. Briefings in Bioinformatics 13(3): 281-291 (2012)- [j21]Chia-Ling Huang, John Lamb, Leonid Chindelevitch, Jarek Kostrowicki, Justin Guinney, Charles DeLisi, Daniel Ziemek: Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge. BMC Bioinformatics 13: 46 (2012)
- [j20]Brian D. Athey, James D. Cavalcoli, H. V. Jagadish, Gilbert S. Omenn, Barbara Mirel, Matthias Kretzler, Charles F. Burant, Raphael D. Isokpehi, Charles DeLisi: The NIH National Center for Integrative Biomedical Informatics (NCIBI). JAMIA 19(2): 166-170 (2012)
- [j19]Daichi Shigemizu, Zhenjun Hu, Jui-Hung Hung, Chia-Ling Huang, Yajie Wang, Charles DeLisi: Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer. PLoS Computational Biology 8(2) (2012)
- 2011
- [j18]Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif: COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Research 39(Database-Issue): 11-14 (2011)
- 2010
- [c7]Yue Fan, Mark A. Kon, Shinuk Kim, Charles DeLisi: Smoothing Gene Expression Using Biological Networks. ICMLA 2010: 540-545
2000 – 2009
- 2009
- [j17]Zhenjun Hu, Jui-Hung Hung, Yan Wang, Yi-Chien Chang, Chia-Ling Huang, Matt Huyck, Charles DeLisi: VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Research 37(Web-Server-Issue): 115-121 (2009)
- 2008
- [j16]Zhenjun Hu, Evan S. Snitkin, Charles DeLisi: VisANT: an integrative framework for networks in systems biology. Briefings in Bioinformatics 9(4): 317-325 (2008)
- [j15]Bolan Linghu, Evan S. Snitkin, Dustin T. Holloway, Adam M. Gustafson, Yu Xia, Charles DeLisi: High-precision high-coverage functional inference from integrated data sources. BMC Bioinformatics 9 (2008)
- [c6]
- 2007
- [j14]Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot: Portraits of breast cancer progression. BMC Bioinformatics 8 (2007)
- [j13]Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi: VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research 35(Web-Server-Issue): 625-632 (2007)
- [j12]Timothy E. Reddy, Charles DeLisi, Boris E. Shakhnovich: Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites. PLoS Computational Biology 3(5) (2007)
- [c5]Mark A. Kon, Yue Fan, Dustin T. Holloway, Charles DeLisi: SVMotif: A Machine Learning Motif Algorithm. ICMLA 2007: 573-580
- [c4]Mark A. Kon, Dustin T. Holloway, Yue Fan, Chaitanya Sai, Charles DeLisi: Learning Methods for DNA Binding in Computational Biology. IJCNN 2007: 2358-2365
- 2006
- [j11]Jie Wu, Zhenjun Hu, Charles DeLisi: Gene annotation and network inference by phylogenetic profiling. BMC Bioinformatics 7: 80 (2006)
- [j10]Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mellor, Jie Wu, Charles DeLisi: Comparative assessment of performance and genome dependence among phylogenetic profiling methods. BMC Bioinformatics 7: 420 (2006)
- [j9]Dustin T. Holloway, Mark A. Kon, Charles DeLisi: Machine learning methods for transcription data integration. IBM Journal of Research and Development 50(6): 631-644 (2006)
- [c3]Joe Mellor, Charles DeLisi: An equilibrium partitioning model connecting gene expression and cis-motif content. ISMB (Supplement of Bioinformatics) 2006: 368-374
- 2005
- [j8]Zhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin T. Holloway, Charles DeLisi: VisANT: data-integrating visual framework for biological networks and modules. Nucleic Acids Research 33(Web-Server-Issue): 352-357 (2005)
- [c2]
- 2004
- [j7]Zhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLisi: VisANT: an online visualization and analysis tool for biological interaction data. BMC Bioinformatics 5: 17 (2004)
- 2003
- [j6]Jie Wu, Simon Kasif, Charles DeLisi: Identification of functional links between genes using phylogenetic profiles. Bioinformatics 19(12): 1524-1530 (2003)
- [j5]Boris E. Shakhnovich, John M. Harvey, Steve Comeau, David Lorenz, Charles DeLisi, Eugene I. Shakhnovich: ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations. BMC Bioinformatics 4: 34 (2003)
- 2002
- [j4]Rhonda Harrison, Charles DeLisi: Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae. Bioinformatics 18(10): 1289-1296 (2002)
- [j3]Joseph C. Mellor, Itai Yanai, Karl H. Clodfelter, Julian Mintseris, Charles DeLisi: Predictome: a database of putative functional links between proteins. Nucleic Acids Research 30(1): 306-309 (2002)
- [c1]Rhonda Harrison, Charles DeLisi: A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c.. SAC 2002: 151-158
1990 – 1999
- 1996
- [j2]Kamalakar Gulukota, Sandor Vajda, Charles DeLisi: Peptide docking using dynamic programming. Journal of Computational Chemistry 17(4): 418-428 (1996)
1980 – 1989
- 1984
- [j1]Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi: Computer analysis and structure prediction of nucleic acids and proteins. Nucleic Acids Research 12(1): 417-428 (1984)
Coauthor Index
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last updated on 2013-04-13 00:47 CEST by the dblp team