Fred P. Davis

Fred P. Davis, Andrej Sali: The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures. PLoS Computational Biology 6(2) (2010)

Fred P. Davis, Sean R. Eddy: A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas. Bioinformatics 25(13): 1647-1654 (2009)

Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali: MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research 37(Database-Issue): 347-354 (2009)

Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali: The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. BMC Bioinformatics 8(S-4) (2007)

Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali: DBAli tools: mining the protein structure space. Nucleic Acids Research 35(Web-Server-Issue): 393-397 (2007)

Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali: MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research 34(Database-Issue): 291-295 (2006)

Dmitry Korkin, Fred P. Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali: Structural Modeling of Protein Interactions by Analogy: Application to PSD-95. PLoS Computational Biology 2(11) (2006)

Fred P. Davis, Andrej Sali: PIBASE: a comprehensive database of structurally defined protein interfaces. Bioinformatics 21(9): 1901-1907 (2005)

Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali: MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Research 32(Database-Issue): 217-222 (2004)