Ramón Díaz-Uriarte

Angel Carro, Daniel Rico, Oscar M. Rueda, Ramón Díaz-Uriarte, David G. Pisano: waviCGH: a web application for the analysis and visualization of genomic copy number alterations. Nucleic Acids Research 38(Web-Server-Issue): 182-187 (2010)

Oscar M. Rueda, Ramón Díaz-Uriarte: RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions. Bioinformatics 25(15): 1959-1960 (2009)

Oscar M. Rueda, Ramón Díaz-Uriarte: Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously. BMC Bioinformatics 10: 308 (2009)

Edward R. Morrissey, Ramón Díaz-Uriarte: Pomelo II: finding differentially expressed genes. Nucleic Acids Research 37(Web-Server-Issue): 581-586 (2009)

Ramón Díaz-Uriarte: SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data. BMC Bioinformatics 9 (2008)

Andreu Alibés, Andrés Cañada, Ramón Díaz-Uriarte: PaLS: filtering common literature, biological terms and pathway information. Nucleic Acids Research 36(Web-Server-Issue): 364-367 (2008)

Andreu Alibés, Patricio Yankilevich, Andrés Cañada, Ramón Díaz-Uriarte: IDconverter and IDClight: Conversion and annotation of gene and protein IDs. BMC Bioinformatics 8 (2007)

Ramón Díaz-Uriarte: GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest. BMC Bioinformatics 8 (2007)

Oscar M. Rueda, Ramón Díaz-Uriarte: A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145. BMC Bioinformatics 8 (2007)

Ramón Díaz-Uriarte, Andreu Alibés, Edward R. Morrissey, Andrés Cañada, Oscar M. Rueda, Mariana L. Neves: Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. Nucleic Acids Research 35(Web-Server-Issue): 75-80 (2007)

Oscar M. Rueda, Ramón Díaz-Uriarte: Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH. PLoS Computational Biology 3(6) (2007)

Ramón Díaz-Uriarte, Sara Alvarez de Andrés: Gene selection and classification of microarray data using random forest. BMC Bioinformatics 7: 3 (2006)

Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo: Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. Bioinformatics 21(13): 2988-2993 (2005)

Juan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo: GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. Nucleic Acids Research 33(Web-Server-Issue): 616-620 (2005)

Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo: FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 20(4): 578-580 (2004)

Juan M. Vaquerizas, Joaquín Dopazo, Ramón Díaz-Uriarte: DNMAD: web-based diagnosis and normalization for microarray data. Bioinformatics 20(18): 3656-3658 (2004)

Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo: New challenges in gene expression data analysis and the extended GEPAS. Nucleic Acids Research 32(Web-Server-Issue): 485-491 (2004)

Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo: New Challenges in Gene Expression Data Analysis and the Extended GEPAS. Spanish Bioinformatics Conference 2004: 1-5

Ramón Díaz-Uriarte: Variable Selection from Random Forests: Application to Gene Expression Data. Spanish Bioinformatics Conference 2004: 47-52

Ramón Díaz-Uriarte, David Casado: Can we Find Molecular Signatures from Gene Expression Data? Spanish Bioinformatics Conference 2004: 173-178

Javier Herrero, Ramón Díaz-Uriarte, Joaquín Dopazo: Gene expression data preprocessing. Bioinformatics 19(5): 655-656 (2003)

Javier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo: GEPAS: a web-based resource for microarray gene expression data analysis. Nucleic Acids Research 31(13): 3461-3467 (2003)