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Miklós Csürös

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2010 – today

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2016
[r2]
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Miklós Csürös:
Distance-Based Phylogeny Reconstruction (Fast-Converging). Encyclopedia of Algorithms 2016: 564-567
2013
[j10]
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  - journals/bmcbi/BarekeSSVHSC13
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Eric Bareke, Virginie Saillour, Jean-François Spinella, Ramon Vidal, Jasmine Healy, Daniel Sinnett, Miklós Csürös:
Joint genotype inference with germline and somatic mutations. BMC Bioinformatics 14(S-5): S3 (2013)
[p1]
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Miklós Csürös:
How to Infer Ancestral Genome Features by Parsimony: Dynamic Programming over an Evolutionary Tree. Models and Algorithms for Genome Evolution 2013: 29-45
2012
[c15]
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Eric Bareke, Jean-François Spinella, Ramon Vidal, Jasmine Healy, Daniel Sinnett, Miklós Csürös:
A novel mathematical basis for predicting somatic single nucleotide variants from next-generation sequencing. BCB 2012: 533-535
2011
[j9]
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Miklós Csürös, Igor B. Rogozin, Eugene V. Koonin:
A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes. PLoS Computational Biology 7(9) (2011)
2010
[c14]
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Miklós Csürös:
Approximate Counting with a Floating-Point Counter. COCOON 2010: 358-367
[c13]
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Miklós Csürös, Szilveszter Juhos, Attila Bérces:
Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA. WABI 2010: 176-188

2000 – 2009

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2009
[i3]
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  - journals/corr/abs-0904-3062
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Miklós Csürös:
Approximate counting with a floating-point counter. CoRR abs/0904.3062 (2009)
2008
[j8]
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  - journals/bioinformatics/Csuros08
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Miklós Csürös:
Malin: maximum likelihood analysis of intron evolution in eukaryotes. Bioinformatics 24(13): 1538-1539 (2008)
[c12]
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Miklós Csürös:
Ancestral Reconstruction by Asymmetric Wagner Parsimony over Continuous Characters and Squared Parsimony over Distributions. RECOMB-CG 2008: 72-86
[r1]
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Miklós Csürös:
Distance-Based Phylogeny Reconstruction (Fast-Converging). Encyclopedia of Algorithms 2008
2007
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  - journals/algorithmica/CsurosM07
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Miklós Csürös, Bin Ma:
Rapid Homology Search with Neighbor Seeds. Algorithmica 48(2): 187-202 (2007)
[c11]
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Miklós Csürös, J. Andrew Holey, Igor B. Rogozin:
In search of lost introns. ISMB/ECCB (Supplement of Bioinformatics) 2007: 87-96
2006
[j6]
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Miklós Csürös:
On the Estimation of Intron Evolution. PLoS Computational Biology 2(7) (2006)
[c10]
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Miklós Csürös, István Miklós:
A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer. RECOMB 2006: 206-220
[c9]
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Miklós Csürös, Ming-Te Cheng, Andreas Grimm, Amine Halawani, Perrine Landreau:
Segmentation with an Isochore Distribution. WABI 2006: 388-399
2005
[j5]
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Miklós Csürös, Miklós Ruszinkó:
Single-user tracing and disjointly superimposed codes. IEEE Trans. Information Theory 51(4): 1606-1611 (2005)
[c8]
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Miklós Csürös, Bin Ma:
Rapid Homology Search with Two-Stage Extension and Daughter Seeds. COCOON 2005: 104-114
[c7]
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Miklós Csürös:
Likely Scenarios of Intron Evolution. Comparative Genomics 2005: 47-60
[i2]
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Miklós Csürös:
A linear-time algorithm for finding the longest segment which scores above a given threshold. CoRR abs/cs/0512016 (2005)
2004
[j4]
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Miklós Csürös, Aleksandar Milosavljevic:
Pooled Genomic Indexing (PGI): Analysis and Design of Experiments. Journal of Computational Biology 11(5): 1001-1021 (2004)
[j3]
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Miklós Csürös:
Maximum-Scoring Segment Sets. IEEE/ACM Trans. Comput. Biology Bioinform. 1(4): 139-150 (2004)
[c6]
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Miklós Csürös:
Performing Local Similarity Searches with Variable Length Seeds. CPM 2004: 373-387
[c5]
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Miklós Csürös:
Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract). WABI 2004: 62-73
2002
[j2]
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Miklós Csürös:
Fast Recovery of Evolutionary Trees with Thousands of Nodes. Journal of Computational Biology 9(2): 277-297 (2002)
[c4]
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Miklós Csürös, Aleksandar Milosavljevic:
Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment Design. WABI 2002: 10-28
2001
[j1]
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Miklós Csürös, Ming-Yang Kao:
Provably Fast and Accurate Recovery of Evolutionary Trees through Harmonic Greedy Triplets. SIAM J. Comput. 31(1): 306-322 (2001)
[c3]
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Miklós Csürös:
Fast recovery of evolutionary trees with thousands of nodes. RECOMB 2001: 104-113
2000
[i1]
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  - journals/corr/cs-DS-0011038
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Miklós Csürös, Ming-Yang Kao:
Provably Fast and Accurate Recovery of Evolutionary Trees through Harmonic Greedy Triplets. CoRR cs.DS/0011038 (2000)

1990 – 1999

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1999
[c2]
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Miklós Csürös, Ming-Yang Kao:
Recovering Evolutionary Trees Through Harmonic Greedy Triplets. SODA 1999: 261-270
1997
[c1]
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Dana Angluin, Miklós Csürös:
Learning Markov Chains with Variable Memory Length from Noisy Output. COLT 1997: 298-308

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