Colin Collins

Deniz Yörükoglu, Faraz Hach, Lucas Swanson, Colin Collins, Inanç Birol, Süleyman Cenk Sahinalp: Dissect: detection and characterization of novel structural alterations in transcribed sequences. Bioinformatics 28(12): 179-187 (2012)

Andrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin Collins, Süleyman Cenk Sahinalp: Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing. RECOMB 2012: 181-182

Yen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk, Colin Collins, Süleyman Cenk Sahinalp: CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population. WABI 2012: 178-189

Andrew McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin Collins, Süleyman Cenk Sahinalp: Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. Bioinformatics 27(11): 1481-1488 (2011)

Phuong Dao, Kendric Wang, Colin Collins, Martin Ester, Anna Lapuk, Süleyman Cenk Sahinalp: Optimally discriminative subnetwork markers predict response to chemotherapy. Bioinformatics [ISMB/ECCB] 27(13): 205-213 (2011)

Anna M. Ritz, Pamela L. Paris, Michael Ittmann, Colin Collins, Benjamin J. Raphael: Detection of recurrent rearrangement breakpoints from copy number data. BMC Bioinformatics 12: 114 (2011)

Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J. Raphael: Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer. PLoS Computational Biology 4(4) (2008)

Benjamin J. Raphael, Stanislav Volik, Colin Collins, Pavel A. Pevzner: Reconstructing tumor genome architectures. ECCB 2003: 162-171