Kei-Hoi Cheung

Matthew Holford, James P. McCusker, Kei-Hoi Cheung, Michael Krauthammer: A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinformatics 13(S-1): S10 (2012)

Huajun Chen, Yimin Wang, Kei-Hoi Cheung (Eds.): Semantic e-Science. Annals of Information Systems 11, Springer 2010, isbn 978-1-4419-5902-7

Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd, Kei-Hoi Cheung: Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience. Artificial Intelligence in Medicine 48(1): 21-28 (2010)

Matthew Holford, Ekta Khurana, Kei-Hoi Cheung, Mark Gerstein: Using semantic web rules to reason on an ontology of pseudogenes. Bioinformatics [ISMB] 26(12): 71-78 (2010)

Matthew Holford, James P. McCusker, Kei-Hoi Cheung, Michael Krauthammer: Analysis of Cancer Omics Data In A Semantic Web Framework. SWAT4LS 2010

Matthew Holford, James P. McCusker, Kei-Hoi Cheung, Michael Krauthammer: Analysis Of Cancer Omics Data In A Semantic Web Framework. CoRR abs/1012.1648 (2010)

Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend: Bringing Web 2.0 to bioinformatics. Briefings in Bioinformatics 10(1): 1-10 (2009)

Kei-Hoi Cheung, Eric Prud'hommeaux, Yimin Wang, Susie Stephens: Semantic Web for Health Care and Life Sciences: a review of the state of the art. Briefings in Bioinformatics 10(2): 111-113 (2009)

Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis N. Marenco, Matthew Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller: Approaches to neuroscience data integration. Briefings in Bioinformatics 10(4): 345-353 (2009)

Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, Adrian Paschke: A journey to Semantic Web query federation in the life sciences. BMC Bioinformatics 10(S-10): 10 (2009)

Hugo Y. K. Lam, Ekta Khurana, Gang Fang, Philip Cayting, Nicholas Carriero, Kei-Hoi Cheung, Mark B. Gerstein: Pseudofam: the pseudogene families database. Nucleic Acids Research 37(Database-Issue): 738-743 (2009)

Matthias Samwald, Ernest Lim, Peter Masiar, Luis N. Marenco, Huajun Chen, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung: Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research. MIE 2009: 317-321

Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung: Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. JAMIA 15(6): 783-786 (2008)

Kei-Hoi Cheung, Vipul Kashyap, Joanne Luciano, Huajun Chen, Yimin Wang, Susie Stephens: Semantic mashup of biomedical data. Journal of Biomedical Informatics 41(5): 683-686 (2008)

Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch: HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. Journal of Biomedical Informatics 41(5): 694-705 (2008)

Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang: Report on semantic web for health care and life sciences workshop. WWW 2008: 1273-1274

Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd: SenseLab: new developments in disseminating neuroscience information. Briefings in Bioinformatics 8(3): 150-162 (2007)

Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein: Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinformatics 23(22): 3073-3079 (2007)

Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung: AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinformatics 8(S-3) (2007)

Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung: Advancing translational research with the Semantic Web. BMC Bioinformatics 8(S-3) (2007)

Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein: LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinformatics 8(S-3) (2007)

Mark Gerstein, Dov Greenbaum, Kei-Hoi Cheung, Perry L. Miller: An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. Journal of Biomedical Informatics 40(1): 73-79 (2007)

Vipul Kashyap, Kei-Hoi Cheung, Donald Doherty, Matthias Samwald, M. Scott Marshall, Joanne Luciano, Susie Stephens, Ivan Herman, Raymond Hookway: Ontology-Based Data Integration For Biomedical Research. The Semantic Web: Real-World Applications from Industry 2007: 97-122

Kei-Hoi Cheung, Peishen Qi, David Tuck, Michael Krauthammer: A semantic web approach to biological pathway data reasoning and integration. J. Web Sem. 4(3): 207-215 (2006)

Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung: SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services. Pacific Symposium on Biocomputing 2006: 188-199

Nicholas Carriero, Michael V. Osier, Kei-Hoi Cheung, Perry L. Miller, Mark Gerstein, Hongyu Zhao, Baolin Wu, Scott Rifkin, Joseph T. Chang, Heping Zhang, Kevin White, Kenneth Williams, Martin H. Schultz: Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies. JAMIA 12(1): 90-98 (2005)

Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein: YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) 2005: 85-96

Remko de Knikker, Youjun Guo, Jin-long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung: A web services choreography scenario for interoperating bioinformatics applications. BMC Bioinformatics 5: 25 (2004)

Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung: Handling multiple testing while interpreting microarrays with the Gene Ontology Database. BMC Bioinformatics 5: 124 (2004)

Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung: Identifying projected clusters from gene expression profiles. Journal of Biomedical Informatics 37(5): 345-357 (2004)

Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant Mane, Yuli Li, Perry L. Miller, Kenneth R. Williams: KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Research 32(Web-Server-Issue): 441-444 (2004)

Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung: Identifying Projected Clusters from Gene Expression Profiles. BIBE 2004: 259-266

Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein: A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. METMBS 2004: 236-242

Deyun Pan, Ning Sun, Kei-Hoi Cheung, Zhong Guan, Ligeng Ma, Matthew Holford, Xingwang Deng, Hongyu Zhao: PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. BMC Bioinformatics 4: 56 (2003)

Haseena Rajeevan, Michael V. Osier, Kei-Hoi Cheung, H. Deng, L. Druskin, R. Heinzen, Judith R. Kidd, S. Stein, Andrew J. Pakstis, Nick P. Tosches, C.-C. Yeh, Perry L. Miller, Kenneth K. Kidd: ALFRED: the ALelle FREquency Database. Update. Nucleic Acids Research 31(1): 270-271 (2003)

Kei-Hoi Cheung, Janet Hager, Kenneth Nelson, Kevin White, Yuli Li, Michael Snyder, Kenneth R. Williams, Perry L. Miller: A dynamic approach to mapping coordinates between microplates and microarrays. Journal of Biomedical Informatics 35(5-6): 306-312 (2002)

Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder: The TRIPLES database: a community resource for yeast molecular biology. Nucleic Acids Research 30(1): 73-75 (2002)

Michael V. Osier, Kei-Hoi Cheung, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd: ALFRED: an allele frequency database for diverse populations and DNA polymorphisms - an update. Nucleic Acids Research 29(1): 317-319 (2001)

Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller: An XML Application For Genomic Data Interoperation. BIBE 2001: 97-103

Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder: TRIPLES: a database of gene function in Saccharomyces cerevisiae. Nucleic Acids Research 28(1): 81-84 (2000)

Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd: ALFRED: an allele frequency database for diverse populations and DNA polymorphisms. Nucleic Acids Research 28(1): 361-363 (2000)

Kei-Hoi Cheung, Dong-Guk Shin: A Graph-based Meta-data Framework for Interoperation between Genome Databases. BIBE 2000: 109-117

Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin: A metadata approach to query interoperation between molecular biology databases. Bioinformatics 14(6): 486-497 (1998)

Kei-Hoi Cheung, Dong-Guk Shin: A simple model capable of expressing meta-data for database interoperability. Computers and Their Applications 1998: 182-185

Kei-Hoi Cheung, Dong-Guk Shin: A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability. IADT 1998: 184-191

Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd: DNA Workbench: A Database Package to Manage Regional Physical Mapping. Journal of Computational Biology 3(2): 319-329 (1996)

Dean F. Sittig, Kei-Hoi Cheung, Lewis Berman: Fuzzy classification of heart rate trends and artifacts. CBMS 1992: 510-519