Martha L. Bulyk

Anton Aboukhalil, Martha L. Bulyk: LOESS correction for length variation in gene set-based genomic sequence analysis. Bioinformatics 28(11): 1446-1454 (2012)

Kimberly Robasky, Martha L. Bulyk: UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Research 39(Database-Issue): 124-128 (2011)

Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk: Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions. RECOMB 2010: 574

Trevis M. Alleyne, Lourdes Peña Castillo, Gwenael Badis, Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid Morris, Timothy R. Hughes: Predicting the binding preference of transcription factors to individual DNA k-mers. Bioinformatics 25(8): 1012-1018 (2009)

Daniel E. Newburger, Martha L. Bulyk: UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic Acids Research 37(Database-Issue): 77-82 (2009)

Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk: Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments. Journal of Computational Biology 15(7): 655-665 (2008)

Martha L. Bulyk, Ernest Fraenkel, Alexander J. Hartemink, Yael Mandel-Gutfreund: Session Introduction. Pacific Symposium on Biocomputing 2008: 438-440

Rachel Patton McCord, Martha L. Bulyk: Functional Trends in Structural Classes of the DNA Binding Domains of Regulatory Transcription Factors. Pacific Symposium on Biocomputing 2008: 441-452

Martha L. Bulyk, Alexander J. Hartemink, Ernest Fraenkel, Gary D. Stormo: Session Introduction. Pacific Symposium on Biocomputing 2007: 470-471

Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk: Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments. RECOMB 2007: 430-443

Bertrand R. Huber, Martha L. Bulyk: Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data. BMC Bioinformatics 7: 229 (2006)

Anthony A. Philippakis, Brian W. Busser, Stephen S. Gisselbrecht, Fangxue Sherry He, Beatriz Estrada, Alan M. Michelson, Martha L. Bulyk: Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells. PLoS Computational Biology 2(5) (2006)

Anthony A. Philippakis, Fangxue Sherry He, Martha L. Bulyk: ModuleFinder: A Tool for Computational Discovery of Cis Regulatory Modules. Pacific Symposium on Biocomputing 2005