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Olivier Bodenreider
2010 – today
- 2013
[j29]Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit P. Sheth, Thomas C. Rindflesch: A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. Journal of Biomedical Informatics 46(2): 238-251 (2013)- [c43]Bastien Rance, Michelle Snyder, Janine Lewis, Olivier Bodenreider: Leveraging Terminological Resources for Mapping between Rare Disease Information Sources. MedInfo 2013: 529-533
- [c42]Lee B. Peters, Jonathan Mortensen, Thang Nguyen, Olivier Bodenreider: Enabling Complex Queries to Drug Information Sources through Functional Composition. MedInfo 2013: 692-696
- [c41]Rainer Winnenburg, Olivier Bodenreider: Exploring Pharmacoepidemiologic Groupings of Drugs from a Clinical Perspective. MedInfo 2013: 827-831
- [c40]László Balkányi, Stefan Schulz, Ronald Cornet, Olivier Bodenreider: Medical Concept Representation: The Years Beyond 2000. MedInfo 2013: 1011
- [c39]Olivier Bodenreider, Duc Nguyen, Pishing Chiang, Philip Chuang, Maureen Madden, Rainer Winnenburg, Rob McClure, Steve Emrick, Ivor D'Souza: The NLM Value Set Authority Center. MedInfo 2013: 1224
- 2012
- [j28]Natalia Grabar, Thierry Hamon, Olivier Bodenreider: Ontologies and terminologies: Continuum or dichotomy? Applied Ontology 7(4): 375-386 (2012)
- [j27]Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider: A mutation-centric approach to identifying pharmacogenomic relations in text. Journal of Biomedical Informatics 45(5): 835-841 (2012)
- [c38]Fleur Mougin, Anita Burgun, Olivier Bodenreider: Comparing drug-class membership in ATC and NDF-RT. IHI 2012: 437-444
- [e3]Olivier Bodenreider, Bastien Rance (Eds.): Data Integration in the Life Sciences - 8th International Conference, DILS 2012, College Park, MD, USA, June 28-29, 2012. Proceedings. Lecture Notes in Computer Science 7348, Springer 2012, ISBN 978-3-642-31039-3
- [e2]Olivier Bodenreider, Maryann E. Martone, Alan Ruttenberg (Eds.): Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011. CEUR Workshop Proceedings 833, CEUR-WS.org 2012
- 2011
- [j26]Emily Doughty, Attila Kertész-Farkas, Olivier Bodenreider, Gary Thompson, Asa Adadey, Thomas A. Peterson, Maricel G. Kann: Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. Bioinformatics 27(3): 408-415 (2011)
- [j25]Satya Sanket Sahoo, Vinh Nguyen, Olivier Bodenreider, Priti Parikh, Todd Minning, Amit P. Sheth: A unified framework for managing provenance information in translational research. BMC Bioinformatics 12: 461 (2011)
- [c37]Delroy Cameron, Ramakanth Kavuluru, Olivier Bodenreider, Pablo N. Mendes, Amit P. Sheth, Krishnaprasad Thirunarayan: Semantic Predications for Complex Information Needs in Biomedical Literature. BIBM 2011: 512-519
- [c36]Vinh Nguyen, Olivier Bodenreider, Todd Minning, Amit P. Sheth: The Knowledge-driven Exploration of Integrated Biomedical Knowledge Sources Facilitates the Generation of New Hypotheses. LISC 2011
- 2010
- [j24]James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson: Extracting Rx information from clinical narrative. JAMIA 17(5): 536-539 (2010)
- [j23]Jyotishman Pathak, Lee B. Peters, Christopher G. Chute, Olivier Bodenreider: Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. JAMIA 17(6): 714-719 (2010)
- [c35]Halit Erdogan, Olivier Bodenreider, Esra Erdem: Finding Semantic Inconsistencies in UMLS using Answer Set Programming. AAAI 2010
- [c34]Elena Cardillo, Genaro Hernandez, Olivier Bodenreider: Integrating Consumer-Oriented Vocabularies with Selected Professional Ones from the UMLS Using Semantic Web Technologies. eHealth 2010: 54-61
- [c33]Guo-Qiang Zhang, Olivier Bodenreider: Using SPARQL to Test for Lattices: Application to Quality Assurance in Biomedical Ontologies. International Semantic Web Conference (2) 2010: 273-288
- [c32]Jonathan Mortensen, Olivier Bodenreider: Comparing pharmacologic classes in NDF-RT and SNOMED CT. Semantic Mining in Biomedicine 2010
- [c31]Satya Sanket Sahoo, Olivier Bodenreider, Pascal Hitzler, Amit P. Sheth, Krishnaprasad Thirunarayan: Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. SSDBM 2010: 461-470
2000 – 2009
- 2009
- [j22]Olivier Bodenreider: Special Issue: Biomedical Ontology in Action. Applied Ontology 4(1): 1-4 (2009)
- [j21]Stefan Schulz, Elena Beisswanger, László van den Hoek, Olivier Bodenreider, Erik M. van Mulligen: Alignment of the UMLS semantic network with BioTop: methodology and assessment. Bioinformatics 25(12) (2009)
- [j20]Lowell Vizenor, Olivier Bodenreider, Alexa T. McCray: Auditing associative relations across two knowledge sources. Journal of Biomedical Informatics 42(3): 426-439 (2009)
- [j19]Fleur Mougin, Olivier Bodenreider, Anita Burgun: Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS. Journal of Biomedical Informatics 42(3): 440-451 (2009)
- [j18]Olivier Bodenreider, Lee B. Peters: A graph-based approach to auditing RxNorm. Journal of Biomedical Informatics 42(3): 558-570 (2009)
- [j17]James J. Cimino, Terry F. Hayamizu, Olivier Bodenreider, Brian Davis, Grace A. Stafford, Martin Ringwald: The caBIG terminology review process. Journal of Biomedical Informatics 42(3): 571-580 (2009)
- [c30]Olivier Bodenreider: Provenance Information in Biomedical Knowledge Repositories - A Use Case. SWPM 2009
- 2008
- [j16]Michael Gruninger, Olivier Bodenreider, Frank Olken, Leo Obrst, Peter Yim: Ontology Summit 2007 - Ontology, taxonomy, folksonomy: Understanding the distinctions. Applied Ontology 3(3): 191-200 (2008)
- [j15]
- [j14]Satya Sanket Sahoo, Olivier Bodenreider, Joni L. Rutter, Karen J. Skinner, Amit P. Sheth: An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence. Journal of Biomedical Informatics 41(5): 752-765 (2008)
- [c29]Olivier Bodenreider: Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues. DILS 2008: 1-4
- [c28]Fleur Mougin, Anita Burgun, Olivier Bodenreider, Julie Chabalier, Olivier Loréal, Pierre Le Beux: Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. DILS 2008: 61-76
- [c27]Olivier Bodenreider: Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies. KR-MED 2008
- [c26]
- 2007
- [j13]Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun: Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. Artificial Intelligence in Medicine 39(3): 183-195 (2007)
- [j12]Songmao Zhang, Peter Mork, Olivier Bodenreider, Philip A. Bernstein: Comparing two approaches for aligning representations of anatomy. Artificial Intelligence in Medicine 39(3): 227-236 (2007)
- [j11]Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung: Advancing translational research with the Semantic Web. BMC Bioinformatics 8(S-3) (2007)
- [j10]Songmao Zhang, Olivier Bodenreider: Experience in Aligning Anatomical Ontologies. Int. J. Semantic Web Inf. Syst. 3(2): 1-26 (2007)
- [c25]Fleur Mougin, Julie Chabalier, Olivier Bodenreider, Anita Burgun: Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes. Actes d'IC 2007: 37-49
- [c24]Kin Wah Fung, Olivier Bodenreider, Alan R. Aronson, William T. Hole, Suresh Srinivasan: Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS. MedInfo 2007: 605-609
- [c23]Songmao Zhang, Olivier Bodenreider: Lessons Learned from Cross-Validating Alignments between Large Anatomical Ontologies. MedInfo 2007: 822-826
- [c22]Satya Sanket Sahoo, Kelly Zeng, Olivier Bodenreider, Amit P. Sheth: From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. MedInfo 2007: 1260-1264
- [c21]Songmao Zhang, Olivier Bodenreider: Hybrid Alignment Strategy for Anatomical Ontologies: Results of the 2007 Ontology Alignment Contest. OM 2007
- 2006
- [j9]Olivier Bodenreider, Robert Stevens: Bio-ontologies: current trends and future directions. Briefings in Bioinformatics 7(3): 256-274 (2006)
- [j8]Fleur Mougin, Anita Burgun, Olivier Bodenreider: Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinformatics 7(S-3) (2006)
- [j7]Songmao Zhang, Olivier Bodenreider: Law and order: Assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy. Comp. in Bio. and Med. 36(7-8): 674-693 (2006)
- [j6]Christine Golbreich, Songmao Zhang, Olivier Bodenreider: The foundational model of anatomy in OWL: Experience and perspectives. J. Web Sem. 4(3): 181-195 (2006)
- [c20]Francisco Azuaje, Haiying Wang, Huiru Zheng, Olivier Bodenreider, Alban Chesneau: Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. ICDM Workshops 2006: 114-119
- [c19]K. Bretonnel Cohen, Olivier Bodenreider, Lynette Hirschman: Session Introduction. Pacific Symposium on Biocomputing 2006: 1-3
- [c18]Robert Stevens, Olivier Bodenreider, Yves A. Lussier: Session Introduction. Pacific Symposium on Biocomputing 2006: 112-115
- [c17]Songmao Zhang, Olivier Bodenreider, Christine Golbreich: Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. Pacific Symposium on Biocomputing 2006: 200-211
- [c16]Songmao Zhang, Olivier Bodenreider: NLM Anatomical Ontology Alignment System. Results of the 2006 Ontology Alignment Contest. Ontology Matching 2006
- [c15]Songmao Zhang, Olivier Bodenreider: Aligning Multiple Anatomical Ontologies through a Reference. Ontology Matching 2006
- [e1]Olivier Bodenreider (Ed.): KR-MED 2006, Formal Biomedical Knowledge Representation, Proceedings of the Second International Workshop on Formal Biomedical Knowledge Representation: "Biomedical Ontology in Action" (KR-MED 2006), Collocated with the 4th International Conference on Formal Ontology in Information Systems (FOIS-2006), Baltimore, Maryland, USA, November 8, 2006. CEUR Workshop Proceedings 222, CEUR-WS.org 2006
- 2005
- [c14]Haiying Wang, Francisco Azuaje, Olivier Bodenreider: An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. CBMS 2005: 389-394
- [c13]Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray: Session Introduction: Biomedical Ontologies. Pacific Symposium on Biocomputing 2005: 89-92
- [c12]Olivier Bodenreider, Marc Aubry, Anita Burgun: Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology. Pacific Symposium on Biocomputing 2005: 104-115
- [c11]M. N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier: GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. Pacific Symposium on Biocomputing 2005: 116-127
- 2004
- [j5]Olivier Bodenreider: The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Research 32(Database-Issue): 267-270 (2004)
- [c10]Francisco Azuaje, Olivier Bodenreider: Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. BIBE 2004: 317-324
- [c9]Haiying Wang, Francisco Azuaje, Olivier Bodenreider, Joaquín Dopazo: Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships. CIBCB 2004: 25-31
- [c8]Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun: Investigating subsumption in DL-based terminologies: A Case Study in SNOMED CT . KR-MED 2004: 12-20
- [c7]Songmao Zhang, Peter Mork, Olivier Bodenreider: Lessons learned from aligning two representations of anatomy. KR-MED 2004: 102-108
- [c6]Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray: Session Introduction. Pacific Symposium on Biocomputing 2004: 164-165
- [c5]Songmao Zhang, Olivier Bodenreider: Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain. Pacific Symposium on Biocomputing 2004: 250-261
- 2003
- [j4]Olivier Bodenreider, Alexa T. McCray: Exploring semantic groups through visual approaches. Journal of Biomedical Informatics 36(6): 414-432 (2003)
- [c4]Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray: Biomedical Ontologies - Session Introduction. Pacific Symposium on Biocomputing 2003: 562-564
- [c3]Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell R. Loane, James G. Mork, Olivier Bodenreider: Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC 2003: 441-450
- 2002
- [j3]Olivier Bodenreider, Anita Burgun, Thomas C. Rindflesch: Assessing the consistency of a biomedical terminology through lexical knowledge. I. J. Medical Informatics 67(1-3): 85-95 (2002)
- [c2]Olivier Bodenreider, Thomas C. Rindflesch, Anita Burgun: Unsupervised, corpus-based method for extending a biomedical terminology. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 53-60
- 2001
- [c1]Anita Burgun, Olivier Bodenreider: Aspects of the taxonomic relation in the biomedical domain. FOIS 2001: 222-233
1990 – 1999
- 1998
- [j2]Olivier Bodenreider, Anita Burgun, Geneviève Botti, Marius Fieschi, Pierre Le Beux, François Kohler: Case Report: Evaluation of the Unified Medical Language System as a Medical Knowledge Source. JAMIA 5(1): 76-87 (1998)
- 1997
- [j1]Anita Burgun, Patrick Denier, Olivier Bodenreider, Geneviève Botti, Denis Delamarre, Bruno Pouliquen, Philippe Oberlin, Jean M. Lévéque, Bertrand Lukacs, François Kohler, Marius Fieschi, Pierre Le Beux: Application of Information Technology: A Web Terminology Server Using UMLS for the Description of Medical Procedures. JAMIA 4(5): 356-363 (1997)
Coauthor Index
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last updated on 2013-10-02 10:59 CEST by the dblp team