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Srinivas Aluru
2010 – today
- 2013
[j35]Xiao Yang, Sriram P. Chockalingam, Srinivas Aluru: A survey of error-correction methods for next-generation sequencing. Briefings in Bioinformatics 14(1): 56-66 (2013)- [j34]Xiao Yang, Jaroslaw Zola, Srinivas Aluru: Large-Scale metagenomic sequence Clustering on Map-Reduce Clusters. J. Bioinformatics and Computational Biology 11(1) (2013)
- [j33]Olga Nikolova, Jaroslaw Zola, Srinivas Aluru: Parallel globally optimal structure learning of Bayesian networks. J. Parallel Distrib. Comput. 73(8): 1039-1048 (2013)
- [j32]Abhinav Sarje, Srinivas Aluru: All-pairs computations on many-core graphics processors. Parallel Computing 39(2): 79-93 (2013)
- 2012
- [c65]
- [c64]
- [c63]Ankit Shah, Sriram P. Chockalingam, Srinivas Aluru: A Parallel Algorithm for Spectrum-based Short Read Error Correction. IPDPS 2012: 60-70
- [c62]Mark J. Clement, Quinn Snell, Srinivas Aluru, David A. Bader: HiCOMB Introduction. IPDPS Workshops 2012: 663-664
- [c61]Olga Nikolova, Srinivas Aluru: Parallel Bayesian network structure learning with application to gene networks. SC 2012: 63
- [c60]Xiao Yang, Florian Sikora, Guillaume Blin, Sylvie Hamel, Romeo Rizzi, Srinivas Aluru: An Algorithmic View on Multi-Related-Segments: A Unifying Model for Approximate Common Interval. TAMC 2012: 319-329
- 2011
- [j31]Xiao Yang, Srinivas Aluru, Karin S. Dorman: Repeat-aware modeling and correction of short read errors. BMC Bioinformatics 12(S-1): S52 (2011)
- [j30]Abhinav Sarje, Jaroslaw Zola, Srinivas Aluru: Accelerating Pairwise Computations on Cell Processors. IEEE Trans. Parallel Distrib. Syst. 22(1): 69-77 (2011)
- [c59]Aditya Varma, Abhiram Ranade, Srinivas Aluru: An improved maximum likelihood formulation for accurate genome assembly. ICCABS 2011: 165-170
- [c58]Xiao Yang, Karin S. Dorman, Srinivas Aluru: Workshop: Flexible read decomposition for improved short read error correction. ICCABS 2011: 277
- [c57]Olga Nikolova, Srinivas Aluru: Parallel Discovery of Direct Causal Relations and Markov Boundaries with Applications to Gene Networks. ICPP 2011: 512-521
- [c56]Ananth Kalyanaraman, Srinivas Aluru, David A. Bader: HiCOMB Introduction. IPDPS Workshops 2011: 426-427
- [c55]Xiao Yang, Jaroslaw Zola, Srinivas Aluru: Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds. IPDPS 2011: 1223-1233
- [e3]Srinivas Aluru, Sanghamitra Bandyopadhyay, Ümit V. Çatalyürek, Devdatt P. Dubhashi, Phillip H. Jones, Manish Parashar, Bertil Schmidt (Eds.): Contemporary Computing - 4th International Conference, IC3 2011, Noida, India, August 8-10, 2011. Proceedings. Communications in Computer and Information Science 168, Springer 2011, ISBN 978-3-642-22605-2
- [r4]
- [r3]Jaroslaw Zola, Srinivas Aluru, Srinivas Aluru: Systems Biology, Network Inference in. Encyclopedia of Parallel Computing 2011: 1997-2002
- [r2]Jaroslaw Zola, Srinivas Aluru, Srinivas Aluru: Systems Biology, Network Inference in. Encyclopedia of Parallel Computing 2011: 1997-2002
- 2010
- [j29]Xiao Yang, Karin S. Dorman, Srinivas Aluru: Reptile: representative tiling for short read error correction. Bioinformatics 26(20): 2526-2533 (2010)
- [j28]André Wehe, Wen-Chieh Chang, Oliver Eulenstein, Srinivas Aluru: A scalable parallelization of the gene duplication problem. J. Parallel Distrib. Comput. 70(3): 237-244 (2010)
- [j27]Jaroslaw Zola, Maneesha Aluru, Abhinav Sarje, Srinivas Aluru: Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks. IEEE Trans. Parallel Distrib. Syst. 21(12): 1721-1733 (2010)
- [c54]
- [c53]William Sarje, Srinivas Aluru: A MapReduce Style Framework for Computations on Trees. ICPP 2010: 343-352
- [c52]Benjamin G. Jackson, Matthew Regennitter, Xiao Yang, Patrick S. Schnable, Srinivas Aluru: Parallel de novo assembly of large genomes from high-throughput short reads. IPDPS 2010: 1-10
- [c51]George Karypis, Srinivas Aluru, David A. Bader: Message from the workshop chairs. IPDPS Workshops 2010: 1-2
- [c50]Abhinav Sarje, Srinivas Aluru: Parallel applications employing pairwise computations on emerging architectures. IPDPS Workshops 2010: 1-4
2000 – 2009
- 2009
- [j26]Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Parallel short sequence assembly of transcriptomes. BMC Bioinformatics 10(S-1) (2009)
- [j25]Abhinav Sarje, Srinivas Aluru: Parallel Genomic Alignments on the Cell Broadband Engine. IEEE Trans. Parallel Distrib. Syst. 20(11): 1600-1610 (2009)
- [c49]Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Assembly of Large Genomes from Paired Short Reads. BICoB 2009: 30-43
- [c48]Olga Nikolova, Jaroslaw Zola, Srinivas Aluru: A parallel algorithm for exact Bayesian network inference. HiPC 2009: 342-349
- [c47]Jaroslaw Zola, Abhinav Sarje, Srinivas Aluru: Constructing Gene Regulatory Networks on Clusters of Cell Processors. ICPP 2009: 108-115
- [c46]Melapudi Vikram, Andrew Baczewzki, Balasubramaniam Shanker, Srinivas Aluru: Parallel accelerated cartesian expansions for particle dynamics simulations. IPDPS 2009: 1-11
- [e2]Sanjay Ranka, Srinivas Aluru, Rajkumar Buyya, Yeh-Ching Chung, Sumeet Dua, Ananth Grama, Sandeep K. S. Gupta, Rajeev Kumar, Vir V. Phoha (Eds.): Contemporary Computing - Second International Conference, IC3 2009, Noida, India, August 17-19, 2009. Proceedings. Communications in Computer and Information Science 40, Springer 2009, ISBN 978-3-642-03546-3
- 2008
- [j24]David A. Bader, Srinivas Aluru: High-performance computational biology. Parallel Computing 34(11): 613-615 (2008)
- [j23]Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis: Large-scale phylogenetic analysis on current HPC architectures. Scientific Programming 16(2-3): 255-270 (2008)
- [j22]Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Consensus Genetic Maps as Median Orders from Inconsistent Sources. IEEE/ACM Trans. Comput. Biology Bioinform. 5(2): 161-171 (2008)
- [c45]Jaroslaw Zola, Maneesha Aluru, Srinivas Aluru: Parallel Information Theory Based Construction of Gene Regulatory Networks. HiPC 2008: 336-349
- [c44]Sudip Seal, Michael Moody, Anna Ceguerra, Simon Ringer, Krishna Rajan, Srinivas Aluru: Tracking Nanostructural Evolution in Alloys: Large-Scale Analysis of Atom Probe Tomography Data on Blue Gene/L. ICPP 2008: 338-345
- [c43]Benjamin G. Jackson, Srinivas Aluru: Parallel Construction of Bidirected String Graphs for Genome Assembly. ICPP 2008: 346-353
- [c42]Andrew Janowczyk, Sharat Chandran, Srinivas Aluru: Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application. ICVGIP 2008: 171-178
- [c41]Abhinav Sarje, Srinivas Aluru: Parallel biological sequence alignments on the Cell Broadband Engine. IPDPS 2008: 1-11
- [r1]
- 2007
- [j21]Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru: Assembling genomes on large-scale parallel computers. J. Parallel Distrib. Comput. 67(12): 1240-1255 (2007)
- [c40]Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Srinivas Aluru: PARALLEL-TCOFFEE: A parallel multiple sequence aligner. ISCA PDCS 2007: 248-253
- [c39]Scott J. Emrich, Anantharaman Kalyanaraman, Srinivas Aluru: Massively parallel expressed sequence tag clustering. ISCA PDCS 2007: 254-261
- [c38]
- [c37]Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. IPDPS 2007: 13
- [c36]Michael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru: Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. SC 2007: 4
- [c35]Pang Ko, Srinivas Aluru: Optimal Self-adjusting Trees for Dynamic String Data in Secondary Storage. SPIRE 2007: 184-194
- [e1]Srinivas Aluru, Manish Parashar, Ramamurthy Badrinath, Viktor K. Prasanna (Eds.): High Performance Computing - HiPC 2007, 14th International Conference, Goa, India, December 18-21, 2007, Proceedings. Lecture Notes in Computer Science 4873, Springer 2007, ISBN 978-3-540-77219-4
- 2006
- [j20]Anantharaman Kalyanaraman, Srinivas Aluru: Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons. J. Bioinformatics and Computational Biology 4(2): 197-216 (2006)
- [j19]Srinivas Aluru, Nancy M. Amato, David A. Bader: Editorial: Special Section on High-Performance Computational Biology. IEEE Trans. Parallel Distrib. Syst. 17(8): 737-739 (2006)
- [c34]Sudip Seal, Srinivas Aluru: Communication-aware Parallel Domain Decomposition using Space Filling Curves. ISCA PDCS 2006: 159-164
- [c33]
- [c32]Srikanta Tirthapura, Sudip Seal, Srinivas Aluru: A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition. ICPP 2006: 505-512
- [c31]Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru: Assembling genomes on large-scale parallel computers. IPDPS 2006
- [c30]Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: M11 - High-performance computing methods for computational genomics. SC 2006: 225
- [p1]
- 2005
- [j18]Sudip Seal, Srikanth Komarina, Srinivas Aluru: An optimal hierarchical clustering algorithm for gene expression data. Inf. Process. Lett. 93(3): 143-147 (2005)
- [j17]Pang Ko, Srinivas Aluru: Space efficient linear time construction of suffix arrays. J. Discrete Algorithms 3(2-4): 143-156 (2005)
- [j16]Fatih Erdogan Sevilgen, Srinivas Aluru, Natsuhiko Futamura: Parallel algorithms for tree accumulations. J. Parallel Distrib. Comput. 65(1): 85-93 (2005)
- [j15]Bhanu Hariharan, Srinivas Aluru: Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods. Parallel Computing 31(3-4): 311-331 (2005)
- [j14]Rama Sangireddy, Natsuhiko Futamura, Srinivas Aluru, Arun K. Somani: Scalable, memory efficient, high-speed IP lookup algorithms. IEEE/ACM Trans. Netw. 13(4): 802-812 (2005)
- [c29]Zhenhui Shen, Srinivas Aluru, Srikanta Tirthapura: Indexing for Subscription Covering in Publish-Subscribe Systems. ISCA PDCS 2005: 328-333
- [c28]Benjamin G. Jackson, Srinivas Aluru, Patrick S. Schnable: Consensus Genetic Maps: A Graph Theoretic Approach. CSB 2005: 35-43
- [c27]Anantharaman Kalyanaraman, Srinivas Aluru: Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons. CSB 2005: 56-64
- 2004
- [j13]Scott J. Emrich, Srinivas Aluru, Yan Fu, Tsui-Jung Wen, Mahesh Narayanan, Ling Guo, Daniel A. Ashlock, Patrick S. Schnable: A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics 20(2): 140-147 (2004)
- [j12]David A. Bader, Srinivas Aluru: Special Issue: High Performance Computational Biology. Concurrency - Practice and Experience 16(9): 817-821 (2004)
- [j11]Stjepan Rajko, Srinivas Aluru: Space and Time Optimal Parallel Sequence Alignments. IEEE Trans. Parallel Distrib. Syst. 15(12): 1070-1081 (2004)
- [c26]Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru: Space-Conserving Optimal DNA-Protein Alignment . CSB 2004: 80-88
- [c25]Srinivas Aluru, Fatih Erdogan Sevilgen: Efficient Methods for Database Storage and Retrieval Using Space-Filling Curves. ISCIS 2004: 503-512
- [c24]Meng-Shiou Wu, Ricky A. Kendall, Srinivas Aluru: A tunable collective communication framework on a cluster of SMPS. Parallel and Distributed Computing and Networks 2004: 56-63
- 2003
- [j10]Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra: Parallel biological sequence comparison using prefix computations. J. Parallel Distrib. Comput. 63(3): 264-272 (2003)
- [j9]Srinivas Aluru, David A. Bader: Guest Editor's Introduction: Special issue on high-performance computational biology. J. Parallel Distrib. Comput. 63(7-8): 671-673 (2003)
- [j8]Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang: Parallel Syntenic Alignments. Parallel Processing Letters 13(4): 689-703 (2003)
- [c23]
- [c22]Stjepan Rajko, Srinivas Aluru: Space and Time Optimal Parallel Sequence Alignments. ICPP 2003: 39-47
- 2002
- [j7]Natsuhiko Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan: Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins. IEEE Trans. Parallel Distrib. Syst. 13(6): 544-555 (2002)
- [c21]Meng-Shiou Wu, Srinivas Aluru, Ricky A. Kendall: Mixed Mode Matrix Multiplication. CLUSTER 2002: 195-
- [c20]
- [c19]Anantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari: Space and Time Efficient Parallel Algorithms and Software for EST Clustering. ICPP 2002: 331-
- [c18]
- [c17]
- [c16]Bhanu Hariharan, Srinivas Aluru, Balasubramaniam Shanker: A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces. SC 2002: 1-17
- 2001
- [c15]Bhanu Hariharan, Srinivas Aluru: Efficient Parallel Algorithms and Software for Compressed Octrees with Applications to Hierarchical Methods. HiPC 2001: 125-136
- 2000
- [j6]Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Parallel Construction of Multidimensional Binary Search Trees. IEEE Trans. Parallel Distrib. Syst. 11(2): 136-148 (2000)
- [c14]Fatih Erdogan Sevilgen, Natsuhiko Futamura, Srinivas Aluru: A Provably Optimal, Distribution-Independent Parallel Fast Multipole Method. IPDPS 2000: 77-84
1990 – 1999
- 1999
- [c13]Srinivas Aluru, Fatih Erdogan Sevilgen: Dynamic Compressed Hypertoctrees with Application to the N-Body Problem. FSTTCS 1999: 21-33
- [c12]Srinivas Aluru, Desh Ranjan, Natsuhiko Futamura: A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation. HiPC 1999: 339-348
- [c11]Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra: Parallel Biological Sequence Comparison Using Prefix Computations. IPPS/SPDP 1999: 653-659
- [c10]Srinivas Aluru, Songrit Maneewongvatana: A Practical Parallel Algorithm for Line Segment Visibility. PDPTA 1999: 1676-1682
- [c9]Fatih Erdogan Sevilgen, Srinivas Aluru: A Unifying Data Structure for Hierarchical Methods. SC 1999: 24
- 1998
- [j5]Srinivas Aluru, John L. Gustafson, Gurpur M. Prabhu, Fatih Erdogan Sevilgen: Distribution-Independent Hierarchical Algorithms for the N-body Problem. The Journal of Supercomputing 12(4): 303-323 (1998)
- 1997
- [j4]Srinivas Aluru: Lagged Fibonacci Random Number Generators for Distributed Memory Parallel Computers. J. Parallel Distrib. Comput. 45(1): 1-12 (1997)
- [j3]Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Practical Algorithms for Selection on Coarse-Grained Parallel Computers. IEEE Trans. Parallel Distrib. Syst. 8(8): 813-824 (1997)
- 1996
- [j2]John L. Gustafson, Srinivas Aluru: Massively Parallel Searching for Better Algorithms or How to Do a Cross Product with Five Multiplications. Scientific Programming 5(3): 203-217 (1996)
- [c8]Srinivas Aluru: Parallel Additive Lagged Fibonacci Random Number Generators. International Conference on Supercomputing 1996: 102-108
- [c7]Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Parallel Construction of Multidimensional Binary Search Trees. International Conference on Supercomputing 1996: 205-212
- [c6]Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Practical Algorithms for Selection on Coarse-Grained Parallel Computers. IPPS 1996: 309-313
- [c5]Srinivas Aluru, Songrit Maneewongvatana: Practical Paralle1 Algorithm for Constructing Line Arrangements. PDPTA 1996: 125-135
- 1995
- [c4]Srinivas Aluru: Properties of Binomial Coefficients and Implications to Parallelizing Lagged Fibonacci Random Number Generators. ICPP (3) 1995: 25-28
- 1994
- [c3]Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson: Truly distribution-independent algorithms for the N-body problem. SC 1994: 420-428
- 1993
- [c2]Srinivas Aluru, John L. Gustafson: A Massively Parallel Optimizer for Expression Evaluation. International Conference on Supercomputing 1993: 97-106
- [c1]
- 1992
- [j1]Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson: A random number generator for parallel computers. Parallel Computing 18(8): 839-847 (1992)
Coauthor Index
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last updated on 2013-10-02 11:15 CEST by the dblp team