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ORCIDBibTeX records: Francisco M. Couto
@article{DBLP:journals/csur/PatoBC24,
author = {Matilde Pato and
M{\'{a}}rcia Barros and
Francisco M. Couto},
title = {Survey on Recommender Systems for Biomedical Items in Life and Health
Sciences},
journal = {{ACM} Comput. Surv.},
volume = {56},
number = {6},
pages = {149:1--149:32},
year = {2024},
url = {https://doi.org/10.1145/3639047},
doi = {10.1145/3639047},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/csur/PatoBC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ac/FernandesDC23,
author = {Maria Fernandes and
J{\'{e}}r{\'{e}}mie Decouchant and
Francisco M. Couto},
title = {Chapter Two - Security, privacy, and trust management in {DNA} computing},
journal = {Adv. Comput.},
volume = {129},
pages = {39--81},
year = {2023},
url = {https://doi.org/10.1016/bs.adcom.2022.08.009},
doi = {10.1016/BS.ADCOM.2022.08.009},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ac/FernandesDC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SousaC23,
author = {Diana F. Sousa and
Francisco M. Couto},
title = {{K-RET:} knowledgeable biomedical relation extraction system},
journal = {Bioinform.},
volume = {39},
number = {4},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad174},
doi = {10.1093/BIOINFORMATICS/BTAD174},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SousaC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AsifMLKC23,
author = {Muhammad Asif and
Hugo F. M. C. Martiniano and
Andre Lamurias and
Samina Kausar and
Francisco M. Couto},
title = {{DGH-GO:} dissecting the genetic heterogeneity of complex diseases
using gene ontology},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {171},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05290-4},
doi = {10.1186/S12859-023-05290-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AsifMLKC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/ConceicaoSSC23,
author = {Sofia I R. Concei{\c{c}}{\~{a}}o and
Diana F. Sousa and
Pedro Silvestre and
Francisco M. Couto},
editor = {Atul Kr. Ojha and
A. Seza Dogru{\"{o}}z and
Giovanni Da San Martino and
Harish Tayyar Madabushi and
Ritesh Kumar and
Elisa Sartori},
title = {lasigeBioTM at SemEval-2023 Task 7: Improving Natural Language Inference
Baseline Systems with Domain Ontologies},
booktitle = {Proceedings of the The 17th International Workshop on Semantic Evaluation,
SemEval@ACL 2023, Toronto, Canada, 13-14 July 2023},
pages = {10--15},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.semeval-1.2},
doi = {10.18653/V1/2023.SEMEVAL-1.2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/ConceicaoSSC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-05609,
author = {Pedro Ruas and
Diana F. Sousa and
Andr{\'{e}} Neves and
Carlos Cruz and
Francisco M. Couto},
title = {{LASIGE} and {UNICAGE} solution to the {NASA} LitCoin {NLP} Competition},
journal = {CoRR},
volume = {abs/2308.05609},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.05609},
doi = {10.48550/ARXIV.2308.05609},
eprinttype = {arXiv},
eprint = {2308.05609},
timestamp = {Wed, 23 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-05609.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RuasC22,
author = {Pedro Ruas and
Francisco M. Couto},
title = {{NILINKER:} Attention-based approach to {NIL} Entity Linking},
journal = {J. Biomed. Informatics},
volume = {132},
pages = {104137},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2022.104137},
doi = {10.1016/J.JBI.2022.104137},
timestamp = {Mon, 24 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/RuasC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/SousaC22,
author = {Diana F. Sousa and
Francisco M. Couto},
title = {Biomedical Relation Extraction With Knowledge Graph-Based Recommendations},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {26},
number = {8},
pages = {4207--4217},
year = {2022},
url = {https://doi.org/10.1109/JBHI.2022.3173558},
doi = {10.1109/JBHI.2022.3173558},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/SousaC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/frma/LamuriasJNSC21,
author = {Andre Lamurias and
Sofia Jesus and
Vanessa Neveu and
Reza M. Salek and
Francisco M. Couto},
title = {Information Retrieval Using Machine Learning for Biomarker Curation
in the Exposome-Explorer},
journal = {Frontiers Res. Metrics Anal.},
volume = {6},
pages = {689264},
year = {2021},
url = {https://doi.org/10.3389/frma.2021.689264},
doi = {10.3389/FRMA.2021.689264},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/frma/LamuriasJNSC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/BarrosMC21,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
title = {Hybrid semantic recommender system for chemical compounds in large-scale
datasets},
journal = {J. Cheminformatics},
volume = {13},
number = {1},
pages = {15},
year = {2021},
url = {https://doi.org/10.1186/s13321-021-00495-2},
doi = {10.1186/S13321-021-00495-2},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/BarrosMC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/CamposC21,
author = {Margarida M. Campos and
Francisco M. Couto},
editor = {Guglielmo Faggioli and
Nicola Ferro and
Alexis Joly and
Maria Maistro and
Florina Piroi},
title = {Post-processing BioBERT And Using Voting Methods for Biomedical Question
Answering},
booktitle = {Proceedings of the Working Notes of {CLEF} 2021 - Conference and Labs
of the Evaluation Forum, Bucharest, Romania, September 21st - to -
24th, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {2936},
pages = {258--273},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-2936/paper-19.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:42 +0100},
biburl = {https://dblp.org/rec/conf/clef/CamposC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/RuasAC21,
author = {Pedro Ruas and
Vitor D. T. Andrade and
Francisco M. Couto},
editor = {Guglielmo Faggioli and
Nicola Ferro and
Alexis Joly and
Maria Maistro and
Florina Piroi},
title = {LASIGE-BioTM at {MESINESP2:} entity linking with semantic similarity
and extreme multi-label classification on Spanish biomedical documents},
booktitle = {Proceedings of the Working Notes of {CLEF} 2021 - Conference and Labs
of the Evaluation Forum, Bucharest, Romania, September 21st - to -
24th, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {2936},
pages = {324--334},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-2936/paper-24.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/RuasAC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/BarrosCPR21,
author = {M{\'{a}}rcia Barros and
Francisco M. Couto and
Matilde Pato and
Pedro Ruas},
editor = {Feida Zhu and
Beng Chin Ooi and
Chunyan Miao},
title = {Creating Recommender Systems Datasets in Scientific Fields},
booktitle = {{KDD} '21: The 27th {ACM} {SIGKDD} Conference on Knowledge Discovery
and Data Mining, Virtual Event, Singapore, August 14-18, 2021},
pages = {4029--4030},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3447548.3470805},
doi = {10.1145/3447548.3470805},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/BarrosCPR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaLSCP21,
author = {Daniel Faria and
Beatriz Lima and
Marta Contreiras Silva and
Francisco M. Couto and
Catia Pesquita},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {{AML} and {AMLC} results for {OAEI} 2021},
booktitle = {Proceedings of the 16th International Workshop on Ontology Matching
co-located with the 20th International Semantic Web Conference {(ISWC}
2021), Virtual conference, October 25, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {3063},
pages = {131--136},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-3063/oaei21\_paper4.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaLSCP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/21/SousaLC21,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
editor = {Hugh M. Cartwright},
title = {Using Neural Networks for Relation Extraction from Biomedical Literature},
booktitle = {Artificial Neural Networks - Third Edition},
series = {Methods in Molecular Biology},
volume = {2190},
pages = {289--305},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-1-0716-0826-5\_14},
doi = {10.1007/978-1-0716-0826-5\_14},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/21/SousaLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/LamuriasSC20,
author = {Andre Lamurias and
Diana F. Sousa and
Francisco M. Couto},
title = {Generating Biomedical Question Answering Corpora From Q{\&}A Forums},
journal = {{IEEE} Access},
volume = {8},
pages = {161042--161051},
year = {2020},
url = {https://doi.org/10.1109/ACCESS.2020.3020868},
doi = {10.1109/ACCESS.2020.3020868},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/LamuriasSC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SousaLC20,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
title = {A hybrid approach toward biomedical relation extraction training corpora:
combining distant supervision with crowdsourcing},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa104},
doi = {10.1093/DATABASE/BAAA104},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SousaLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/RuasLC20,
author = {Pedro Ruas and
Andre Lamurias and
Francisco M. Couto},
title = {Linking chemical and disease entities to ontologies by integrating
PageRank with extracted relations from literature},
journal = {J. Cheminformatics},
volume = {12},
number = {1},
pages = {57},
year = {2020},
url = {https://doi.org/10.1186/s13321-020-00461-4},
doi = {10.1186/S13321-020-00461-4},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/RuasLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigir/NunesLBBCCCFFJJ20,
author = {S{\'{e}}rgio Nunes and
Suzanne Little and
Sumit Bhatia and
Ludovico Boratto and
Guillaume Cabanac and
Ricardo Campos and
Francisco M. Couto and
Stefano Faralli and
Ingo Frommholz and
Adam Jatowt and
Al{\'{\i}}pio Jorge and
Mirko Marras and
Philipp Mayr and
Giovanni Stilo},
title = {{ECIR} 2020 workshops: assessing the impact of going online},
journal = {{SIGIR} Forum},
volume = {54},
number = {1},
pages = {7:1--7:11},
year = {2020},
url = {https://doi.org/10.1145/3451964.3451971},
doi = {10.1145/3451964.3451971},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigir/NunesLBBCCCFFJJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/FernandesDVCV20,
author = {Maria Fernandes and
J{\'{e}}r{\'{e}}mie Decouchant and
Marcus V{\"{o}}lp and
Francisco M. Couto and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
title = {DNA-SeAl: Sensitivity Levels to Optimize the Performance of Privacy-Preserving
{DNA} Alignment},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {24},
number = {3},
pages = {907--915},
year = {2020},
url = {https://doi.org/10.1109/JBHI.2019.2914952},
doi = {10.1109/JBHI.2019.2914952},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/FernandesDVCV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/HeNADTHAZFYAWRZ20,
author = {Jiayuan He and
Dat Quoc Nguyen and
Saber A. Akhondi and
Christian Druckenbrodt and
Camilo Thorne and
Ralph Hoessel and
Zubair Afzal and
Zenan Zhai and
Biaoyan Fang and
Hiyori Yoshikawa and
Ameer Albahem and
Jingqi Wang and
Yuankai Ren and
Zhi Zhang and
Yaoyun Zhang and
Mai Hoang Dao and
Pedro Ruas and
Andre Lamurias and
Francisco M. Couto and
Jenny Copara and
Nona Naderi and
Julien Knafou and
Patrick Ruch and
Douglas Teodoro and
Daniel M. Lowe and
John Mayfield and
Abdullatif K{\"{o}}ksal and
Hilal D{\"{o}}nmez and
Elif {\"{O}}zkirimli and
Arzucan {\"{O}}zg{\"{u}}r and
Darshini Mahendran and
Gabrielle Gurdin and
Nastassja Lewinski and
Christina Tang and
Bridget T. McInnes and
C. S. Malarkodi and
Pattabhi Rk Rao and
Sobha Lalitha Devi and
Lawrence Cavedon and
Trevor Cohn and
Timothy Baldwin and
Karin Verspoor},
editor = {Linda Cappellato and
Carsten Eickhoff and
Nicola Ferro and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol},
title = {An Extended Overview of the {CLEF} 2020 ChEMU Lab: Information Extraction
of Chemical Reactions from Patents},
booktitle = {Working Notes of {CLEF} 2020 - Conference and Labs of the Evaluation
Forum, Thessaloniki, Greece, September 22-25, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2696},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2696/paper\_254.pdf},
timestamp = {Tue, 12 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/HeNADTHAZFYAWRZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/NevesLC20,
author = {Andr{\'{e}} Neves and
Andr{\'{e}} Lam{\'{u}}rias and
Francisco M. Couto},
editor = {Linda Cappellato and
Carsten Eickhoff and
Nicola Ferro and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol},
title = {Extreme Multi-Label Classification applied to the Biomedical and Multilingual
Panorama},
booktitle = {Working Notes of {CLEF} 2020 - Conference and Labs of the Evaluation
Forum, Thessaloniki, Greece, September 22-25, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2696},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2696/paper\_67.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/NevesLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/RuasLC20,
author = {Pedro Ruas and
Andre Lamurias and
Francisco M. Couto},
editor = {Linda Cappellato and
Carsten Eickhoff and
Nicola Ferro and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol},
title = {LasigeBioTM Team at {CLEF2020} ChEMU Evaluation Lab: Named Entity
Recognition and Event extraction from chemical reactions described
in patents using BioBERT {NER} and {RE}},
booktitle = {Working Notes of {CLEF} 2020 - Conference and Labs of the Evaluation
Forum, Thessaloniki, Greece, September 22-25, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2696},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2696/paper\_175.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/RuasLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/BarrosMC20,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
editor = {Joemon M. Jose and
Emine Yilmaz and
Jo{\~{a}}o Magalh{\~{a}}es and
Pablo Castells and
Nicola Ferro and
M{\'{a}}rio J. Silva and
Fl{\'{a}}vio Martins},
title = {Hybrid Semantic Recommender System for Chemical Compounds},
booktitle = {Advances in Information Retrieval - 42nd European Conference on {IR}
Research, {ECIR} 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12036},
pages = {94--101},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45442-5\_12},
doi = {10.1007/978-3-030-45442-5\_12},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ecir/BarrosMC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/NevesLC20,
author = {Andr{\'{e}} Neves and
Andr{\'{e}} Lam{\'{u}}rias and
Francisco M. Couto},
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Biomedical Question Answering using Extreme Multi-Label Classification
and Ontologies in the Multilingual Panorama},
booktitle = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619/short2.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:16 +0100},
biburl = {https://dblp.org/rec/conf/ecir/NevesLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/SousaC20,
author = {Diana F. Sousa and
Francisco M. Couto},
editor = {Joemon M. Jose and
Emine Yilmaz and
Jo{\~{a}}o Magalh{\~{a}}es and
Pablo Castells and
Nicola Ferro and
M{\'{a}}rio J. Silva and
Fl{\'{a}}vio Martins},
title = {BiOnt: Deep Learning Using Multiple Biomedical Ontologies for Relation
Extraction},
booktitle = {Advances in Information Retrieval - 42nd European Conference on {IR}
Research, {ECIR} 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12036},
pages = {367--374},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45442-5\_46},
doi = {10.1007/978-3-030-45442-5\_46},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ecir/SousaC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/CoutoK20,
author = {Francisco M. Couto and
Martin Krallinger},
editor = {Joemon M. Jose and
Emine Yilmaz and
Jo{\~{a}}o Magalh{\~{a}}es and
Pablo Castells and
Nicola Ferro and
M{\'{a}}rio J. Silva and
Fl{\'{a}}vio Martins},
title = {Proposal of the First International Workshop on Semantic Indexing
and Information Retrieval for Health from Heterogeneous Content Types
and Languages {(SIIRH)}},
booktitle = {Advances in Information Retrieval - 42nd European Conference on {IR}
Research, {ECIR} 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12036},
pages = {654--659},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45442-5\_87},
doi = {10.1007/978-3-030-45442-5\_87},
timestamp = {Mon, 04 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ecir/CoutoK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/CoutoK20a,
author = {Francisco M. Couto and
Martin Krallinger},
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Report of the First International Workshop on Semantic Indexing and
Information Retrieval for Health from heterogeneous content types
and languages},
booktitle = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619/paper4.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecir/CoutoK20a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/RuasLC20,
author = {Pedro Ruas and
Andr{\'{e}} Lam{\'{u}}rias and
Francisco M. Couto},
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Towards a Multilingual Corpus for Named Entity Linking Evaluation
in the Clinical Domain},
booktitle = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619/short3.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecir/RuasLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/BarrosLSRC20,
author = {M{\'{a}}rcia Barros and
Andre Lamurias and
Diana F. Sousa and
Pedro Ruas and
Francisco M. Couto},
editor = {Karin Verspoor and
Kevin Bretonnel Cohen and
Michael Conway and
Berry de Bruijn and
Mark Dredze and
Rada Mihalcea and
Byron C. Wallace},
title = {{COVID-19:} {A} Semantic-Based Pipeline for Recommending Biomedical
Entities},
booktitle = {Proceedings of the 1st Workshop on {NLP} for COVID-19@ {EMNLP} 2020,
Online, December 2020},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.nlpcovid19-2.20},
doi = {10.18653/V1/2020.NLPCOVID19-2.20},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/BarrosLSRC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recsys/ColacoBC20,
author = {F{\'{a}}bio Cola{\c{c}}o and
M{\'{a}}rcia Barros and
Francisco M. Couto},
editor = {Rodrygo L. T. Santos and
Leandro Balby Marinho and
Elizabeth M. Daly and
Li Chen and
Kim Falk and
Noam Koenigstein and
Edleno Silva de Moura},
title = {DRecPy: {A} Python Framework for Developing Deep Learning-Based Recommenders},
booktitle = {RecSys 2020: Fourteenth {ACM} Conference on Recommender Systems, Virtual
Event, Brazil, September 22-26, 2020},
pages = {675--680},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3383313.3418483},
doi = {10.1145/3383313.3418483},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recsys/ColacoBC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/LimaFCCP20,
author = {Beatriz Lima and
Daniel Faria and
Francisco M. Couto and
Isabel F. Cruz and
Catia Pesquita},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {{OAEI} 2020 results for {AML} and {AMLC}},
booktitle = {Proceedings of the 15th International Workshop on Ontology Matching
co-located with the 19th International Semantic Web Conference {(ISWC}
2020), Virtual conference (originally planned to be in Athens, Greece),
November 2, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2788},
pages = {154--160},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2788/oaei20\_paper3.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:06 +0100},
biburl = {https://dblp.org/rec/conf/semweb/LimaFCCP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sepln/RuasNACA20,
author = {Pedro Ruas and
Andr{\'{e}} Neves and
Vitor D. T. Andrade and
Francisco M. Couto and
Mario Ezra Arag{\'{o}}n},
editor = {Miguel {\'{A}}ngel Garc{\'{\i}}a Cumbreras and
Julio Gonzalo and
Eugenio Mart{\'{\i}}nez C{\'{a}}mara and
Raquel Mart{\'{\i}}nez{-}Unanue and
Paolo Rosso and
Salud M. Jim{\'{e}}nez Zafra and
Jenny Alexandra Ortiz Zambrano and
Antonio Miranda and
Jordi Porta Zamorano and
Yoan Guti{\'{e}}rrez and
Aiala Ros{\'{a}} and
Manuel Montes{-}y{-}G{\'{o}}mez and
Manuel Garc{\'{\i}}a Vega},
title = {LasigeBioTM at {CANTEMIST:} Named Entity Recognition and Normalization
of Tumour Morphology Entities and Clinical Coding of Spanish Health-related
Documents},
booktitle = {Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020)
co-located with 36th Conference of the Spanish Society for Natural
Language Processing {(SEPLN} 2020), M{\'{a}}laga, Spain, September
23th, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2664},
pages = {422--437},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2664/cantemist\_paper11.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:58 +0100},
biburl = {https://dblp.org/rec/conf/sepln/RuasNACA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ecir/2020siirh,
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619},
urn = {urn:nbn:de:0074-2619-2},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecir/2020siirh.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-07139,
author = {Diana F. Sousa and
Francisco M. Couto},
title = {BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation
Extraction},
journal = {CoRR},
volume = {abs/2001.07139},
year = {2020},
url = {https://arxiv.org/abs/2001.07139},
eprinttype = {arXiv},
eprint = {2001.07139},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-07139.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-07440,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
title = {Hybrid Semantic Recommender System for Chemical Compounds},
journal = {CoRR},
volume = {abs/2001.07440},
year = {2020},
url = {https://arxiv.org/abs/2001.07440},
eprinttype = {arXiv},
eprint = {2001.07440},
timestamp = {Fri, 24 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-07440.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-02375,
author = {Andre Lamurias and
Diana F. Sousa and
Francisco M. Couto},
title = {Generating Scientific Question Answering Corpora from Q{\&}A forums},
journal = {CoRR},
volume = {abs/2002.02375},
year = {2020},
url = {https://arxiv.org/abs/2002.02375},
eprinttype = {arXiv},
eprint = {2002.02375},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-02375.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-06748,
author = {S{\'{e}}rgio Nunes and
Suzanne Little and
Sumit Bhatia and
Ludovico Boratto and
Guillaume Cabanac and
Ricardo Campos and
Francisco M. Couto and
Stefano Faralli and
Ingo Frommholz and
Adam Jatowt and
Al{\'{\i}}pio Jorge and
Mirko Marras and
Philipp Mayr and
Giovanni Stilo},
title = {{ECIR} 2020 Workshops: Assessing the Impact of Going Online},
journal = {CoRR},
volume = {abs/2005.06748},
year = {2020},
url = {https://arxiv.org/abs/2005.06748},
eprinttype = {arXiv},
eprint = {2005.06748},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-06748.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/BarrosMC19,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
title = {Using Research Literature to Generate Datasets of Implicit Feedback
for Recommending Scientific Items},
journal = {{IEEE} Access},
volume = {7},
pages = {176668--176680},
year = {2019},
url = {https://doi.org/10.1109/ACCESS.2019.2958002},
doi = {10.1109/ACCESS.2019.2958002},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/BarrosMC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LamuriasSCC19,
author = {Andre Lamurias and
Diana F. Sousa and
Luka A. Clarke and
Francisco M. Couto},
title = {{BO-LSTM:} classifying relations via long short-term memory networks
along biomedical ontologies},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {10},
year = {2019},
url = {https://doi.org/10.1186/s12859-018-2584-5},
doi = {10.1186/S12859-018-2584-5},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LamuriasSCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LamuriasRC19,
author = {Andre Lamurias and
Pedro Ruas and
Francisco M. Couto},
title = {{PPR-SSM:} personalized PageRank and semantic similarity measures
for entity linking},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {534:1--534:12},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3157-y},
doi = {10.1186/S12859-019-3157-Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LamuriasRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FerreiraC19,
author = {Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Multi-domain semantic similarity in biomedical research},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {10},
pages = {23--31},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2810-9},
doi = {10.1186/S12859-019-2810-9},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FerreiraC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LamuriasC19,
author = {Andre Lamurias and
Francisco M. Couto},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {LasigeBioTM at {MEDIQA} 2019: Biomedical Question Answering using
Bidirectional Transformers and Named Entity Recognition},
booktitle = {Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL
2019, Florence, Italy, August 1, 2019},
pages = {523--527},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/w19-5057},
doi = {10.18653/V1/W19-5057},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/LamuriasC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/SousaLC19,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
editor = {Jill Burstein and
Christy Doran and
Thamar Solorio},
title = {A Silver Standard Corpus of Human Phenotype-Gene Relations},
booktitle = {Proceedings of the 2019 Conference of the North American Chapter of
the Association for Computational Linguistics: Human Language Technologies,
{NAACL-HLT} 2019, Minneapolis, MN, USA, June 2-7, 2019, Volume 1 (Long
and Short Papers)},
pages = {1487--1492},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/n19-1152},
doi = {10.18653/V1/N19-1152},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/naacl/SousaLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPTCC19,
author = {Daniel Faria and
Catia Pesquita and
Teemu Tervo and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {{AML} and {AMLC} Results for {OAEI} 2019},
booktitle = {Proceedings of the 14th International Workshop on Ontology Matching
co-located with the 18th International Semantic Web Conference {(ISWC}
2019), Auckland, New Zealand, October 26, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2536},
pages = {101--106},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2536/oaei19\_paper3.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:08 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPTCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/LamuriasC19,
author = {Andre Lamurias and
Francisco M. Couto},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Text Mining for Bioinformatics Using Biomedical Literature},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {602--611},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20409-3},
doi = {10.1016/B978-0-12-809633-8.20409-3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/LamuriasC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/CoutoL19,
author = {Francisco M. Couto and
Andre Lamurias},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Semantic Similarity Definition},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {870--876},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20401-9},
doi = {10.1016/B978-0-12-809633-8.20401-9},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/CoutoL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-10728,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
title = {A Silver Standard Corpus of Human Phenotype-Gene Relations},
journal = {CoRR},
volume = {abs/1903.10728},
year = {2019},
url = {http://arxiv.org/abs/1903.10728},
eprinttype = {arXiv},
eprint = {1903.10728},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-10728.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-11391,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
title = {Using Neural Networks for Relation Extraction from Biomedical Literature},
journal = {CoRR},
volume = {abs/1905.11391},
year = {2019},
url = {http://arxiv.org/abs/1905.11391},
eprinttype = {arXiv},
eprint = {1905.11391},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-11391.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/FariaPMMCC18,
author = {Daniel Faria and
Catia Pesquita and
Isabela Mott and
Catarina Martins and
Francisco M. Couto and
Isabel F. Cruz},
title = {Tackling the challenges of matching biomedical ontologies},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {4:1--4:19},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0170-9},
doi = {10.1186/S13326-017-0170-9},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/FariaPMMCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/DecouchantFVCV18,
author = {J{\'{e}}r{\'{e}}mie Decouchant and
Maria Fernandes and
Marcus V{\"{o}}lp and
Francisco M. Couto and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
title = {Accurate filtering of privacy-sensitive information in raw genomic
data},
journal = {J. Biomed. Informatics},
volume = {82},
pages = {1--12},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.04.006},
doi = {10.1016/J.JBI.2018.04.006},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/DecouchantFVCV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/CoutoL18,
author = {Francisco M. Couto and
Andre Lamurias},
title = {{MER:} a shell script and annotation server for minimal named entity
recognition and linking},
journal = {J. Cheminformatics},
volume = {10},
number = {1},
pages = {58:1--58:10},
year = {2018},
url = {https://doi.org/10.1186/s13321-018-0312-9},
doi = {10.1186/S13321-018-0312-9},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/CoutoL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPBTCGCC18,
author = {Daniel Faria and
Catia Pesquita and
Booma Sowkarthiga Balasubramani and
Teemu Tervo and
David Carri{\c{c}}o and
Rodrigo Garrilha and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh},
title = {Results of {AML} participation in {OAEI} 2018},
booktitle = {Proceedings of the 13th International Workshop on Ontology Matching
co-located with the 17th International Semantic Web Conference, OM@ISWC
2018, Monterey, CA, USA, October 8, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2288},
pages = {125--131},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2288/oaei18\_paper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPBTCGCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CamposPC17,
author = {Lu{\'{\i}}s Campos and
Vasco Pedro and
Francisco M. Couto},
title = {Impact of translation on named-entity recognition in radiology texts},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax064},
year = {2017},
url = {https://doi.org/10.1093/database/bax064},
doi = {10.1093/DATABASE/BAX064},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CamposPC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FerreiraISC17,
author = {Jo{\~{a}}o D. Ferreira and
Bruno In{\'{a}}cio and
Reza M. Salek and
Francisco M. Couto},
title = {Assessing Public Metabolomics Metadata, Towards Improving Quality},
journal = {J. Integr. Bioinform.},
volume = {14},
number = {4},
year = {2017},
url = {https://doi.org/10.1515/jib-2017-0054},
doi = {10.1515/JIB-2017-0054},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/FerreiraISC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/CogoBCGFV17,
author = {Vinicius Vielmo Cogo and
Alysson Bessani and
Francisco M. Couto and
Margarida Gama{-}Carvalho and
Maria Fernandes and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {How Can Photo Sharing Inspire Sharing Genomes?},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {74--82},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_10},
doi = {10.1007/978-3-319-60816-7\_10},
timestamp = {Wed, 12 Oct 2022 08:58:54 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/CogoBCGFV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/BarataCC17,
author = {Ant{\'{o}}nio Barata and
Luc{\'{\i}}lia Carvalho and
Francisco M. Couto},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {Anthropometric Data Analytics: {A} Portuguese Case Study},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {92--100},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_12},
doi = {10.1007/978-3-319-60816-7\_12},
timestamp = {Wed, 21 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/BarataCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/InacioFC17,
author = {Bruno In{\'{a}}cio and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {Metadata Analyser: Measuring Metadata Quality},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {197--204},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_24},
doi = {10.1007/978-3-319-60816-7\_24},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/InacioFC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/FernandesDCV17,
author = {Maria Fernandes and
J{\'{e}}r{\'{e}}mie Decouchant and
Francisco M. Couto and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {Cloud-Assisted Read Alignment and Privacy},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {220--227},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_27},
doi = {10.1007/978-3-319-60816-7\_27},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/FernandesDCV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/RodriguesC17,
author = {Miguel J. Rodrigues and
Francisco M. Couto},
editor = {Steven Bethard and
Marine Carpuat and
Marianna Apidianaki and
Saif M. Mohammad and
Daniel M. Cer and
David Jurgens},
title = {MoRS at SemEval-2017 Task 3: Easy to use {SVM} in Ranking Tasks},
booktitle = {Proceedings of the 11th International Workshop on Semantic Evaluation,
SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
pages = {287--291},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/S17-2046},
doi = {10.18653/V1/S17-2046},
timestamp = {Fri, 06 Aug 2021 00:39:34 +0200},
biburl = {https://dblp.org/rec/conf/semeval/RodriguesC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LamuriasSPCC17,
author = {Andre Lamurias and
Diana F. Sousa and
Sofia Pereira and
Luka A. Clarke and
Francisco M. Couto},
editor = {Steven Bethard and
Marine Carpuat and
Marianna Apidianaki and
Saif M. Mohammad and
Daniel M. Cer and
David Jurgens},
title = {{ULISBOA} at SemEval-2017 Task 12: Extraction and classification of
temporal expressions and events},
booktitle = {Proceedings of the 11th International Workshop on Semantic Evaluation,
SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
pages = {1019--1023},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/S17-2179},
doi = {10.18653/V1/S17-2179},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/LamuriasSPCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaBSMPCC17,
author = {Daniel Faria and
Booma S. Balasubramani and
Vivek R. Shivaprabhu and
Isabela Mott and
Catia Pesquita and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh},
title = {Results of {AML} in {OAEI} 2017},
booktitle = {Proceedings of the 12th International Workshop on Ontology Matching
co-located with the 16th International Semantic Web Conference {(ISWC}
2017), Vienna, Austria, October 21, 2017},
series = {{CEUR} Workshop Proceedings},
volume = {2032},
pages = {122--128},
publisher = {CEUR-WS.org},
year = {2017},
url = {https://ceur-ws.org/Vol-2032/oaei17\_paper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:05 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaBSMPCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/CamposC17,
author = {Lu{\'{\i}}s Campos and
Francisco M. Couto},
title = {{MRA} - Proof of Concept of a Multilingual Report Annotator Web Application},
journal = {CoRR},
volume = {abs/1704.01748},
year = {2017},
url = {http://arxiv.org/abs/1704.01748},
eprinttype = {arXiv},
eprint = {1704.01748},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/CamposC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BastosSCC16,
author = {Hugo P. Bastos and
Lisete Sousa and
Luka A. Clarke and
Francisco M. Couto},
title = {Functional coherence metrics in protein families},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {41},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0076-y},
doi = {10.1186/S13326-016-0076-Y},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/BastosSCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LamuriasRCC16,
author = {Andre Lamurias and
Miguel J. Rodrigues and
Luka A. Clarke and
Francisco M. Couto},
editor = {Claire Nedellec and
Robert Bossy and
Jin{-}Dong Kim},
title = {Extraction of Regulatory Events using Kernel-based Classifiers and
Distant Supervision},
booktitle = {Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, Berlin,
Germany, August 13, 2016},
pages = {88--92},
publisher = {Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/W16-3011},
doi = {10.18653/V1/W16-3011},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LamuriasRCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/BarrosLFATPC16,
author = {M{\'{a}}rcia Barros and
Andre Lamurias and
Gon{\c{c}}alo Figueir{\'{o}} and
Marta Antunes and
Joana Teixeira and
Alexandre Pinheiro and
Francisco M. Couto},
editor = {Steven Bethard and
Daniel M. Cer and
Marine Carpuat and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {{ULISBOA} at SemEval-2016 Task 12: Extraction of temporal expressions,
clinical events and relations using IBEnt},
booktitle = {Proceedings of the 10th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2016, San Diego, CA, USA, June 16-17, 2016},
pages = {1263--1267},
publisher = {The Association for Computer Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/s16-1196},
doi = {10.18653/V1/S16-1196},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/BarrosLFATPC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPBMCCCC16,
author = {Daniel Faria and
Catia Pesquita and
Booma S. Balasubramani and
Catarina Martins and
Jo{\~{a}}o Cardoso and
Hugo Curado and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh and
Ryutaro Ichise},
title = {{OAEI} 2016 results of {AML}},
booktitle = {Proceedings of the 11th International Workshop on Ontology Matching
co-located with the 15th International Semantic Web Conference {(ISWC}
2016), Kobe, Japan, October 18, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1766},
pages = {138--145},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1766/oaei16\_paper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:07 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPBMCCCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RamosLSC16,
author = {Camila Ramos and
Marco Louro and
Miguel Santos and
Francisco M. Couto},
title = {Knowledge Ratings in MetaboLights},
journal = {CoRR},
volume = {abs/1604.07997},
year = {2016},
url = {http://arxiv.org/abs/1604.07997},
eprinttype = {arXiv},
eprint = {1604.07997},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/RamosLSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/GoncalvesCC16,
author = {Diogo Gon{\c{c}}alves and
Miguel Costa and
Francisco M. Couto},
title = {A Flexible Recommendation System for Cable {TV}},
journal = {CoRR},
volume = {abs/1609.02451},
year = {2016},
url = {http://arxiv.org/abs/1609.02451},
eprinttype = {arXiv},
eprint = {1609.02451},
timestamp = {Tue, 15 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/GoncalvesCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/GoncalvesCC16a,
author = {Diogo Gon{\c{c}}alves and
Miguel Costa and
Francisco M. Couto},
title = {A Large-Scale Characterization of User Behaviour in Cable {TV}},
journal = {CoRR},
volume = {abs/1609.02453},
year = {2016},
url = {http://arxiv.org/abs/1609.02453},
eprinttype = {arXiv},
eprint = {1609.02453},
timestamp = {Tue, 15 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/GoncalvesCC16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RodriguesFLC16,
author = {Miguel J. Rodrigues and
Miguel Fal{\'{e}} and
Andre Lamurias and
Francisco M. Couto},
title = {{WS4A:} a Biomedical Question and Answering System based on public
Web Services and Ontologies},
journal = {CoRR},
volume = {abs/1609.08492},
year = {2016},
url = {http://arxiv.org/abs/1609.08492},
eprinttype = {arXiv},
eprint = {1609.08492},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/RodriguesFLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MachadoRFC15,
author = {Catia M. Machado and
Dietrich Rebholz{-}Schuhmann and
Ana T. Freitas and
Francisco M. Couto},
title = {The semantic web in translational medicine: current applications and
future directions},
journal = {Briefings Bioinform.},
volume = {16},
number = {1},
pages = {89--103},
year = {2015},
url = {https://doi.org/10.1093/bib/bbt079},
doi = {10.1093/BIB/BBT079},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/MachadoRFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GrozaKDCOSCBZR15,
author = {Tudor Groza and
Sebastian K{\"{o}}hler and
Sandra C. Doelken and
Nigel Collier and
Anika Oellrich and
Damian Smedley and
Francisco M. Couto and
Gareth Baynam and
Andreas Zankl and
Peter N. Robinson},
title = {Automatic concept recognition using the Human Phenotype Ontology reference
and test suite corpora},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav005},
doi = {10.1093/DATABASE/BAV005},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GrozaKDCOSCBZR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/LamuriasFC15,
author = {Andre Lamurias and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Improving chemical entity recognition through h-index based semantic
similarity},
journal = {J. Cheminformatics},
volume = {7},
number = {{S-1}},
pages = {S13},
year = {2015},
url = {https://doi.org/10.1186/1758-2946-7-S1-S13},
doi = {10.1186/1758-2946-7-S1-S13},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/LamuriasFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/KrallingerRL15,
author = {Martin Krallinger and
Obdulia Rabal and
Florian Leitner and
Miguel Vazquez and
David Salgado and
Zhiyong Lu and
Robert Leaman and
Yanan Lu and
Donghong Ji and
Daniel M. Lowe and
Roger A. Sayle and
Riza Theresa Batista{-}Navarro and
Rafal Rak and
Torsten Huber and
Tim Rockt{\"{a}}schel and
S{\'{e}}rgio Matos and
David Campos and
Buzhou Tang and
Hua Xu and
Tsendsuren Munkhdalai and
Keun Ho Ryu and
S. V. Ramanan and
P. Senthil Nathan and
Slavko Zitnik and
Marko Bajec and
Lutz Weber and
Matthias Irmer and
Saber A. Akhondi and
Jan A. Kors and
Shuo Xu and
Xin An and
Utpal Kumar Sikdar and
Asif Ekbal and
Masaharu Yoshioka and
Thaer M. Dieb and
Miji Choi and
Karin Verspoor and
Madian Khabsa and
C. Lee Giles and
Hongfang Liu and
Ravikumar Komandur Elayavilli and
Andre Lamurias and
Francisco M. Couto and
Hong{-}Jie Dai and
Richard Tzong{-}Han Tsai and
Caglar Ata and
Tolga Can and
Anabel Usie and
Rui Alves and
Isabel Segura{-}Bedmar and
Paloma Mart{\'{\i}}nez and
Julen Oyarzabal and
Alfonso Valencia},
title = {The {CHEMDNER} corpus of chemicals and drugs and its annotation principles},
journal = {J. Cheminformatics},
volume = {7},
number = {{S-1}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1758-2946-7-S1-S2},
doi = {10.1186/1758-2946-7-S1-S2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/KrallingerRL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/epia/BarataATTGC15,
author = {Carlos Barata and
M{\'{o}}nica Abreu and
Pedro Torres and
Jorge Teixeira and
Tiago Jo{\~{a}}o Guerreiro and
Francisco M. Couto},
editor = {Francisco C. Pereira and
Penousal Machado and
Ernesto Costa and
Am{\'{\i}}lcar Cardoso},
title = {Social Impact - Identifying Quotes of Literary Works in Social Networks},
booktitle = {Progress in Artificial Intelligence - 17th Portuguese Conference on
Artificial Intelligence, {EPIA} 2015, Coimbra, Portugal, September
8-11, 2015. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9273},
pages = {789--795},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23485-4\_79},
doi = {10.1007/978-3-319-23485-4\_79},
timestamp = {Tue, 27 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/epia/BarataATTGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/LamuriasPCC15,
author = {Andre Lamurias and
Vasco Pedro and
Luka A. Clarke and
Francisco M. Couto},
editor = {Francisco M. Couto and
Janna Hastings},
title = {Annotating biomedical ontology terms in electronic health records
using crowd-sourcing},
booktitle = {Proceedings of the International Conference on Biomedical Ontology,
{ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1515},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1515/early1.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/LamuriasPCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/LamuriasCC15,
author = {Andre Lamurias and
Luka A. Clarke and
Francisco M. Couto},
editor = {Albert Bifet and
Michael May and
Bianca Zadrozny and
Ricard Gavald{\`{a}} and
Dino Pedreschi and
Francesco Bonchi and
Jaime S. Cardoso and
Myra Spiliopoulou},
title = {{IICE:} Web Tool for Automatic Identification of Chemical Entities
and Interactions},
booktitle = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2015, Porto, Portugal, September 7-11, 2015, Proceedings,
Part {III}},
series = {Lecture Notes in Computer Science},
volume = {9286},
pages = {285--288},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23461-8\_31},
doi = {10.1007/978-3-319-23461-8\_31},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pkdd/LamuriasCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LealMC15,
author = {Andr{\'{e}} Leal and
Bruno Martins and
Francisco M. Couto},
editor = {Daniel M. Cer and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {ULisboa: Recognition and Normalization of Medical Concepts},
booktitle = {Proceedings of the 9th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2015, Denver, Colorado, USA, June 4-5, 2015},
pages = {406--411},
publisher = {The Association for Computer Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/s15-2070},
doi = {10.18653/V1/S15-2070},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/LealMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaMNOSTPCC15,
author = {Daniel Faria and
Catarina Martins and
Amruta Nanavaty and
Daniela Oliveira and
Booma Sowkarthiga and
Aynaz Taheri and
Catia Pesquita and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh},
title = {{AML} results for {OAEI} 2015},
booktitle = {Proceedings of the 10th International Workshop on Ontology Matching
collocated with the 14th International Semantic Web Conference {(ISWC}
2015), Bethlehem, PA, USA, October 12, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1545},
pages = {116--123},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1545/oaei15\_paper1.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaMNOSTPCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wpes/CogoBCV15,
author = {Vinicius Vielmo Cogo and
Alysson Bessani and
Francisco M. Couto and
Paulo Ver{\'{\i}}ssimo},
editor = {Indrajit Ray and
Nicholas Hopper and
Rob Jansen},
title = {A High-Throughput Method to Detect Privacy-Sensitive Human Genomic
Data},
booktitle = {Proceedings of the 14th {ACM} Workshop on Privacy in the Electronic
Society, {WPES} 2015, Denver, Colorado, USA, October 12, 2015},
pages = {101--110},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2808138.2808139},
doi = {10.1145/2808138.2808139},
timestamp = {Wed, 17 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wpes/CogoBCV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2015,
editor = {Francisco M. Couto and
Janna Hastings},
title = {Proceedings of the International Conference on Biomedical Ontology,
{ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1515},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1515},
urn = {urn:nbn:de:0074-1515-7},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PesquitaFCS14,
author = {Catia Pesquita and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {The epidemiology ontology: an ontology for the semantic annotation
of epidemiological resources},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {4},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-4},
doi = {10.1186/2041-1480-5-4},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/PesquitaFCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LamuriasFC14,
author = {Andre Lamurias and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Identifying interactions between chemical entities in biomedical text},
journal = {J. Integr. Bioinform.},
volume = {11},
number = {3},
year = {2014},
url = {https://doi.org/10.2390/biecoll-jib-2014-247},
doi = {10.2390/BIECOLL-JIB-2014-247},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/LamuriasFC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/PesquitaFSNC14,
author = {Catia Pesquita and
Daniel Faria and
Emanuel Santos and
Jean{-}Marc Neefs and
Francisco M. Couto},
editor = {Helena Galhardas and
Erhard Rahm},
title = {Towards Visualizing the Alignment of Large Biomedical Ontologies},
booktitle = {Data Integration in the Life Sciences - 10th International Conference,
{DILS} 2014, Lisbon, Portugal, July 17-18, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8574},
pages = {104--111},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-08590-6\_10},
doi = {10.1007/978-3-319-08590-6\_10},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dils/PesquitaFSNC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/LamuriasFC14,
author = {Andre Lamurias and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
editor = {Julio Saez{-}Rodriguez and
Miguel P. Rocha and
Florentino Fdez{-}Riverola and
Juan F. De Paz Santana},
title = {Chemical Named Entity Recognition: Improving Recall Using a Comprehensive
List of Lexical Features},
booktitle = {8th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2014, 4-6 June, 2014, Salamanca,
Spain},
series = {Advances in Intelligent Systems and Computing},
volume = {294},
pages = {253--260},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07581-5\_30},
doi = {10.1007/978-3-319-07581-5\_30},
timestamp = {Wed, 12 Oct 2022 08:58:54 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/LamuriasFC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LealGMC14,
author = {Andr{\'{e}} Leal and
Diogo Gon{\c{c}}alves and
Bruno Martins and
Francisco M. Couto},
editor = {Preslav Nakov and
Torsten Zesch},
title = {ULisboa: Identification and Classification of Medical Concepts},
booktitle = {Proceedings of the 8th International Workshop on Semantic Evaluation,
SemEval@COLING 2014, Dublin, Ireland, August 23-24, 2014},
pages = {711--715},
publisher = {The Association for Computer Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/s14-2127},
doi = {10.3115/V1/S14-2127},
timestamp = {Tue, 15 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semeval/LealGMC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaJPSC14,
author = {Daniel Faria and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Catia Pesquita and
Emanuel Santos and
Francisco M. Couto},
editor = {Peter Mika and
Tania Tudorache and
Abraham Bernstein and
Chris Welty and
Craig A. Knoblock and
Denny Vrandecic and
Paul Groth and
Natasha F. Noy and
Krzysztof Janowicz and
Carole A. Goble},
title = {Towards Annotating Potential Incoherences in BioPortal Mappings},
booktitle = {The Semantic Web - {ISWC} 2014 - 13th International Semantic Web Conference,
Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {8797},
pages = {17--32},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-11915-1\_2},
doi = {10.1007/978-3-319-11915-1\_2},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semweb/FariaJPSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/Couto14,
author = {Francisco M. Couto},
editor = {Fernando Bobillo and
Rommel N. Carvalho and
Davide Ceolin and
Paulo Cesar G. da Costa and
Claudia d'Amato and
Nicola Fanizzi and
Kathryn B. Laskey and
Kenneth J. Laskey and
Thomas Lukasiewicz and
Trevor P. Martin and
Matthias Nickles and
Michael Pool and
Tom De Nies and
Olaf Hartig and
Paul Groth and
Stephen Marsh},
title = {Rating, Recognizing and Rewarding Metadata Integration and Sharing
on the Semantic Web},
booktitle = {Proceedings of the 10th International Workshop on Uncertainty Reasoning
for the Semantic Web {(URSW} 2014) co-located with the 13th International
Semantic Web Conference {(ISWC} 2014), Riva del Garda, Italy, October
19, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1259},
pages = {67--72},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1259/method2014\_submission\_2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:07 +0100},
biburl = {https://dblp.org/rec/conf/semweb/Couto14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaMNTPSCC14,
author = {Daniel Faria and
Catarina Martins and
Amruta Nanavaty and
Aynaz Taheri and
Catia Pesquita and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Juanzi Li and
Axel Ngonga},
title = {AgreementMakerLight results for {OAEI} 2014},
booktitle = {Proceedings of the 9th International Workshop on Ontology Matching
collocated with the 13th International Semantic Web Conference {(ISWC}
2014), Riva del Garda, Trentino, Italy, October 20, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1317},
pages = {105--112},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1317/oaei14\_paper1.pdf},
timestamp = {Mon, 26 Jun 2023 20:39:38 +0200},
biburl = {https://dblp.org/rec/conf/semweb/FariaMNTPSCC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaCFBSC14,
author = {Catia Pesquita and
Michelle Cheatham and
Daniel Faria and
Joana Barros and
Emanuel Santos and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Juanzi Li and
Axel Ngonga},
title = {Building reference alignments for compound matching of multiple ontologies
using {OBO} cross-products},
booktitle = {Proceedings of the 9th International Workshop on Ontology Matching
collocated with the 13th International Semantic Web Conference {(ISWC}
2014), Riva del Garda, Trentino, Italy, October 20, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1317},
pages = {172--173},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1317/om2014\_poster2.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaCFBSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPSCC14,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Matthew Horridge and
Marco Rospocher and
Jacco van Ossenbruggen},
title = {AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching},
booktitle = {Proceedings of the {ISWC} 2014 Posters {\&} Demonstrations Track
a track within the 13th International Semantic Web Conference, {ISWC}
2014, Riva del Garda, Italy, October 21, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1272},
pages = {457--460},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1272/paper\_151.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPSCC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigir/CostaCS14,
author = {Miguel Costa and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Shlomo Geva and
Andrew Trotman and
Peter Bruza and
Charles L. A. Clarke and
Kalervo J{\"{a}}rvelin},
title = {Learning temporal-dependent ranking models},
booktitle = {The 37th International {ACM} {SIGIR} Conference on Research and Development
in Information Retrieval, {SIGIR} '14, Gold Coast , QLD, Australia
- July 06 - 11, 2014},
pages = {757--766},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2600428.2609619},
doi = {10.1145/2600428.2609619},
timestamp = {Tue, 06 Nov 2018 11:07:24 +0100},
biburl = {https://dblp.org/rec/conf/sigir/CostaCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/w4a/MartinsCSDCCG14,
author = {Jo{\~{a}}o Martins and
Jos{\'{e}} Carilho and
Oliver Schnell and
Carlos Duarte and
Francisco M. Couto and
Lu{\'{\i}}s Carri{\c{c}}o and
Tiago Jo{\~{a}}o Guerreiro},
editor = {Jeffrey P. Bigham and
Yevgen Borodin and
Lu{\'{\i}}s Carri{\c{c}}o},
title = {Friendsourcing the unmet needs of people with dementia},
booktitle = {International Web for All Conference, {W4A} '14, Seoul, Republic of
Korea, April 7-9, 2014},
pages = {35:1--35:4},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2596695.2596716},
doi = {10.1145/2596695.2596716},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/w4a/MartinsCSDCCG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerreiraHC13,
author = {Jo{\~{a}}o D. Ferreira and
Janna Hastings and
Francisco M. Couto},
title = {Exploiting disjointness axioms to improve semantic similarity measures},
journal = {Bioinform.},
volume = {29},
number = {21},
pages = {2781--2787},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt491},
doi = {10.1093/BIOINFORMATICS/BTT491},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerreiraHC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MachadoFC13,
author = {Catia M. Machado and
Ana T. Freitas and
Francisco M. Couto},
title = {Enrichment analysis applied to disease prognosis},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {21},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-21},
doi = {10.1186/2041-1480-4-21},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/MachadoFC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/CoutoP13,
author = {Francisco M. Couto and
Helena Sofia Pinto},
title = {The Next Generation of Similarity Measures that Fully Explore the
Semantics in Biomedical Ontologies},
journal = {J. Bioinform. Comput. Biol.},
volume = {11},
number = {5},
year = {2013},
url = {https://doi.org/10.1142/S0219720013710017},
doi = {10.1142/S0219720013710017},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/CoutoP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/program/MoreiraBCCS13,
author = {Silvio Moreira and
David S. Batista and
Paula Carvalho and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {Tracking politics with {POWER}},
journal = {Program},
volume = {47},
number = {2},
pages = {120--135},
year = {2013},
url = {https://doi.org/10.1108/00330331311313708},
doi = {10.1108/00330331311313708},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/program/MoreiraBCCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipres/FerreiraPCS13,
author = {Jo{\~{a}}o D. Ferreira and
Catia Pesquita and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Jos{\'{e}} Borbinha and
Michael Nelson and
Steve Knight},
title = {Digital preservation of epidemic resources: coupling metadata and
ontologies},
booktitle = {Proceedings of the 10th International Conference on Digital Preservation,
iPRES 2013, Lisbon, Portugal, September 2 - 6, 2013},
year = {2013},
url = {https://hdl.handle.net/11353/10.378034},
timestamp = {Wed, 04 May 2022 13:02:20 +0200},
biburl = {https://dblp.org/rec/conf/ipres/FerreiraPCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/otm/FariaPSPCC13,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Matteo Palmonari and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Robert Meersman and
Herv{\'{e}} Panetto and
Tharam S. Dillon and
Johann Eder and
Zohra Bellahsene and
Norbert Ritter and
Pieter De Leenheer and
Dejing Dou},
title = {The AgreementMakerLight Ontology Matching System},
booktitle = {On the Move to Meaningful Internet Systems: {OTM} 2013 Conferences
- Confederated International Conferences: CoopIS, DOA-Trusted Cloud,
and {ODBASE} 2013, Graz, Austria, September 9-13, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8185},
pages = {527--541},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-41030-7\_38},
doi = {10.1007/978-3-642-41030-7\_38},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/otm/FariaPSPCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/MoreiraFMCS13,
author = {Silvio Moreira and
Jo{\~{a}}o Filgueiras and
Bruno Martins and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Mona T. Diab and
Timothy Baldwin and
Marco Baroni},
title = {{REACTION:} {A} naive machine learning approach for sentiment classification},
booktitle = {Proceedings of the 7th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2013, Atlanta, Georgia, USA, June 14-15, 2013},
pages = {490--494},
publisher = {The Association for Computer Linguistics},
year = {2013},
url = {https://aclanthology.org/S13-2081/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/MoreiraFMCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/GregoPC13,
author = {Tiago Grego and
Francisco R. Pinto and
Francisco M. Couto},
editor = {Mona T. Diab and
Timothy Baldwin and
Marco Baroni},
title = {{LASIGE:} using Conditional Random Fields and ChEBI ontology},
booktitle = {Proceedings of the 7th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2013, Atlanta, Georgia, USA, June 14-15, 2013},
pages = {660--666},
publisher = {The Association for Computer Linguistics},
year = {2013},
url = {https://aclanthology.org/S13-2109/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/GregoPC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaFSC13,
author = {Catia Pesquita and
Daniel Faria and
Emanuel Santos and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Kavitha Srinivas and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz},
title = {To repair or not to repair: reconciling correctness and coherence
in ontology reference alignments},
booktitle = {Proceedings of the 8th International Workshop on Ontology Matching
co-located with the 12th International Semantic Web Conference {(ISWC}
2013), Sydney, Australia, October 21, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1111},
pages = {13--24},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1111/om2013\_Tpaper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:09 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaFSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPSCC13,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Kavitha Srinivas and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz},
title = {AgreementMakerLight results for {OAEI} 2013},
booktitle = {Proceedings of the 8th International Workshop on Ontology Matching
co-located with the 12th International Semantic Web Conference {(ISWC}
2013), Sydney, Australia, October 21, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1111},
pages = {101--108},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1111/oaei13\_paper1.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPSCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaFSSCC13,
author = {Catia Pesquita and
Daniel Faria and
Cosmin Stroe and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Harith Alani and
Lalana Kagal and
Achille Fokoue and
Paul Groth and
Chris Biemann and
Josiane Xavier Parreira and
Lora Aroyo and
Natasha F. Noy and
Chris Welty and
Krzysztof Janowicz},
title = {What's in a 'nym'? Synonyms in Biomedical Ontology Matching},
booktitle = {The Semantic Web - {ISWC} 2013 - 12th International Semantic Web Conference,
Sydney, NSW, Australia, October 21-25, 2013, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8218},
pages = {526--541},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-41335-3\_33},
doi = {10.1007/978-3-642-41335-3\_33},
timestamp = {Tue, 07 Sep 2021 13:48:20 +0200},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaFSSCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/CostaGCS13,
author = {Miguel Costa and
Daniel Gomes and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Leslie Carr and
Alberto H. F. Laender and
Bernadette Farias L{\'{o}}scio and
Irwin King and
Marcus Fontoura and
Denny Vrandecic and
Lora Aroyo and
Jos{\'{e}} Palazzo M. de Oliveira and
Fernanda Lima and
Erik Wilde},
title = {A survey of web archive search architectures},
booktitle = {22nd International World Wide Web Conference, {WWW} '13, Rio de Janeiro,
Brazil, May 13-17, 2013, Companion Volume},
pages = {1045--1050},
publisher = {International World Wide Web Conferences Steering Committee / {ACM}},
year = {2013},
url = {https://doi.org/10.1145/2487788.2488116},
doi = {10.1145/2487788.2488116},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/www/CostaGCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1302-0420,
author = {Francisco M. Couto and
Daniel Faria and
Bruno Tavares and
Pedro Gon{\c{c}}alves and
Paulo Ver{\'{\i}}ssimo},
title = {Benchmarking some Portuguese S{\&}T system research units},
journal = {CoRR},
volume = {abs/1302.0420},
year = {2013},
url = {http://arxiv.org/abs/1302.0420},
eprinttype = {arXiv},
eprint = {1302.0420},
timestamp = {Tue, 28 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1302-0420.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/SantosFPC13,
author = {Emanuel Santos and
Daniel Faria and
Catia Pesquita and
Francisco M. Couto},
title = {Ontology alignment repair through modularization and confidence-based
heuristics},
journal = {CoRR},
volume = {abs/1307.5322},
year = {2013},
url = {http://arxiv.org/abs/1307.5322},
eprinttype = {arXiv},
eprint = {1307.5322},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/SantosFPC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/Couto13,
author = {Francisco M. Couto},
title = {{CIDS} country rankings: comparing documents and citations of USA,
{UK} and China top researchers},
journal = {CoRR},
volume = {abs/1310.5597},
year = {2013},
url = {http://arxiv.org/abs/1310.5597},
eprinttype = {arXiv},
eprint = {1310.5597},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/Couto13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PesquitaC12,
author = {Catia Pesquita and
Francisco M. Couto},
title = {Predicting the Extension of Biomedical Ontologies},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {9},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002630},
doi = {10.1371/JOURNAL.PCBI.1002630},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PesquitaC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CoutoFZSPGDS12,
author = {Francisco M. Couto and
Jo{\~{a}}o D. Ferreira and
Jo{\~{a}}o Zamite and
Carlos Santos and
Tiago Posse and
Paulo M. L. A. Gra{\c{c}}a and
Dulce Domingos and
M{\'{a}}rio J. Silva},
editor = {Ronald Cornet and
Robert Stevens},
title = {The Epidemic Marketplace Platform: towards semantic characterization
of epidemiological resources using biomedical ontologies},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/demo\_1.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CoutoFZSPGDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/FerreiraPCS12,
author = {Jo{\~{a}}o D. Ferreira and
Catia Pesquita and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Ronald Cornet and
Robert Stevens},
title = {Bringing epidemiology into the Semantic Web},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/session1-paper02.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/FerreiraPCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/GregoPC12,
author = {Tiago Grego and
Francisco R. Pinto and
Francisco M. Couto},
editor = {Ronald Cornet and
Robert Stevens},
title = {Identifying Chemical Entities based on ChEBI},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/demo\_8.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/GregoPC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itbam/MachadoCFSF12,
author = {Catia M. Machado and
Francisco M. Couto and
Alexandra R. Fernandes and
Susana Santos and
Ana T. Freitas},
editor = {Christian B{\"{o}}hm and
Sami Khuri and
Lenka Lhotsk{\'{a}} and
M. Elena Renda},
title = {Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy},
booktitle = {Information Technology in Bio- and Medical Informatics - Third International
Conference, {ITBAM} 2012, Vienna, Austria, September 4-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7451},
pages = {151--165},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-32395-9\_12},
doi = {10.1007/978-3-642-32395-9\_12},
timestamp = {Tue, 30 Jan 2024 13:00:56 +0100},
biburl = {https://dblp.org/rec/conf/itbam/MachadoCFSF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/propor/BatistaFCS12,
author = {David S. Batista and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Helena de Medeiros Caseli and
Aline Villavicencio and
Ant{\'{o}}nio J. S. Teixeira and
Fernando Perdig{\~{a}}o},
title = {Toponym Disambiguation Using Ontology-Based Semantic Similarity},
booktitle = {Computational Processing of the Portuguese Language - 10th International
Conference, {PROPOR} 2012, Coimbra, Portugal, April 17-20, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7243},
pages = {179--185},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-28885-2\_20},
doi = {10.1007/978-3-642-28885-2\_20},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/propor/BatistaFCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1212-1625,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Francisco M. Couto and
Cosmin Stroe and
Isabel F. Cruz},
title = {Testing the AgreementMaker System in the Anatomy Task of {OAEI} 2012},
journal = {CoRR},
volume = {abs/1212.1625},
year = {2012},
url = {http://arxiv.org/abs/1212.1625},
eprinttype = {arXiv},
eprint = {1212.1625},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1212-1625.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CoutoS11,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {Disjunctive shared information between ontology concepts: application
to Gene Ontology},
journal = {J. Biomed. Semant.},
volume = {2},
pages = {5},
year = {2011},
url = {https://doi.org/10.1186/2041-1480-2-5},
doi = {10.1186/2041-1480-2-5},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/CoutoS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tlsdkcs/ZamiteSCS11,
author = {Jo{\~{a}}o Zamite and
Fabr{\'{\i}}cio A. B. da Silva and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {MEDCollector: Multisource Epidemic Data Collector},
journal = {Trans. Large Scale Data Knowl. Centered Syst.},
volume = {4},
pages = {40--72},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23740-9\_3},
doi = {10.1007/978-3-642-23740-9\_3},
timestamp = {Tue, 19 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tlsdkcs/ZamiteSCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CruzSPCC11,
author = {Isabel F. Cruz and
Cosmin Stroe and
Catia Pesquita and
Francisco M. Couto and
Valerie Cross},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Biomedical Ontology Matching Using the AgreementMaker System},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper51.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CruzSPCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/FerreiraC11,
author = {Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Generic Semantic Relatedness Measure for Biomedical Ontologies},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper16.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/FerreiraC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/PesquitaC11,
author = {Catia Pesquita and
Francisco M. Couto},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Where {GO} is Going and What it Means for Ontology Extension},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper1.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/PesquitaC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/TavaresBFFGPC11,
author = {Bruno Tavares and
Hugo P. Bastos and
Daniel Faria and
Jo{\~{a}}o D. Ferreira and
Tiago Grego and
Catia Pesquita and
Francisco M. Couto},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {The Biomedical Ontology Applications {(BOA)} Framework},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper56.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/TavaresBFFGPC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/CruzSCFPCP11,
author = {Isabel F. Cruz and
Cosmin Stroe and
Federico Caimi and
Alessio Fabiani and
Catia Pesquita and
Francisco M. Couto and
Matteo Palmonari},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Tom Heath and
Christoph Quix and
Ming Mao and
Isabel F. Cruz},
title = {Using AgreementMaker to align ontologies for {OAEI} 2011},
booktitle = {Proceedings of the 6th International Workshop on Ontology Matching,
Bonn, Germany, October 24, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {814},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-814/oaei11\_paper1.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/CruzSCFPCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tac/BatistaMSCC11,
author = {David S. Batista and
Silvio Moreira and
M{\'{a}}rio J. Silva and
Paula Carvalho and
Francisco M. Couto},
title = {{REACTION} at the Entity Linking task in {KBP} 2011},
booktitle = {Proceedings of the Fourth Text Analysis Conference, {TAC} 2011, Gaithersburg,
Maryland, USA, November 14-15, 2011},
publisher = {{NIST}},
year = {2011},
url = {https://tac.nist.gov/publications/2011/participant.papers/REACTION.proceedings.pdf},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/tac/BatistaMSCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FerreiraC10,
author = {Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Semantic Similarity for Automatic Classification of Chemical Compounds},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {9},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000937},
doi = {10.1371/JOURNAL.PCBI.1000937},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FerreiraC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MachadoCFSCF10,
author = {Catia M. Machado and
Francisco M. Couto and
Alexandra R. Fernandes and
Susana Santos and
Nuno Cardim and
Ana T. Freitas},
title = {Semantic characterization of hypertrophic cardiomyopathy disease},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2010, Hong Kong, December 18, 2010},
pages = {432--439},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/BIBMW.2010.5703841},
doi = {10.1109/BIBMW.2010.5703841},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/MachadoCFSCF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gir/BatistaSCB10,
author = {David S. Batista and
M{\'{a}}rio J. Silva and
Francisco M. Couto and
Bibek Behera},
editor = {Ross Purves and
Paul D. Clough and
Christopher B. Jones},
title = {Geographic signatures for semantic retrieval},
booktitle = {Proceedings of the 6th Workshop on Geographic Information Retrieval,
{GIR} 2010, Zurich, Switzerland, February 18-19, 2010},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1722080.1722104},
doi = {10.1145/1722080.1722104},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gir/BatistaSCB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itbam/ZamiteSCS10,
author = {Jo{\~{a}}o Zamite and
Fabr{\'{\i}}cio A. B. da Silva and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Sami Khuri and
Lenka Lhotsk{\'{a}} and
Nadia Pisanti},
title = {MEDCollector: Multisource Epidemic Data Collector},
booktitle = {Information Technology in Bio- and Medical Informatics, {ITBAM} 2010,
First International Conference, Bilbao, Spain, September 1-2, 2010.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6266},
pages = {16--30},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15020-3\_2},
doi = {10.1007/978-3-642-15020-3\_2},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/itbam/ZamiteSCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itbam/LopesSCZFSS10,
author = {Luis F. Lopes and
Fabr{\'{\i}}cio A. B. da Silva and
Francisco M. Couto and
Jo{\~{a}}o Zamite and
Hugo Alexandre Ferreira and
Carla Sousa and
M{\'{a}}rio J. Silva},
editor = {Sami Khuri and
Lenka Lhotsk{\'{a}} and
Nadia Pisanti},
title = {Epidemic Marketplace: An Information Management System for Epidemiological
Data},
booktitle = {Information Technology in Bio- and Medical Informatics, {ITBAM} 2010,
First International Conference, Bilbao, Spain, September 1-2, 2010.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6266},
pages = {31--44},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15020-3\_3},
doi = {10.1007/978-3-642-15020-3\_3},
timestamp = {Sat, 27 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/itbam/LopesSCZFSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaSCC10,
author = {Catia Pesquita and
Cosmin Stroe and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Fausto Giunchiglia and
Heiner Stuckenschmidt and
Ming Mao and
Isabel F. Cruz},
title = {{BLOOMS} on AgreementMaker: results for {OAEI} 2010},
booktitle = {Proceedings of the 5th International Workshop on Ontology Matching
(OM-2010), Shanghai, China, November 7, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {689},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-689/oaei10\_paper3.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaSCC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ercim/SilvaSC10,
author = {Fabr{\'{\i}}cio A. B. da Silva and
M{\'{a}}rio J. Silva and
Francisco M. Couto},
title = {Epidemic Marketplace: An e-Science Platform for Epidemic Modelling
and Analysis},
journal = {{ERCIM} News},
volume = {2010},
number = {82},
pages = {43--44},
year = {2010},
url = {http://ercim-news.ercim.eu/en82/special/epidemic-marketplace-an-e-science-platform-for-epidemic-modelling-and-analysis},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ercim/SilvaSC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ercim/MachadoCFSCF10,
author = {Catia M. Machado and
Francisco M. Couto and
Alexandra R. Fernandes and
Susana Santos and
Nuno Cardim and
Ana T. Freitas},
title = {Unraveling Hypertrophic Cardiomyopathy Variability},
journal = {{ERCIM} News},
volume = {2010},
number = {82},
pages = {48--49},
year = {2010},
url = {http://ercim-news.ercim.eu/en82/special/unraveling-hypertrophic-cardiomyopathy-variability},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ercim/MachadoCFSCF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PesquitaFFLC09,
author = {Catia Pesquita and
Daniel Faria and
Andr{\'{e}} O. Falc{\~{a}}o and
Phillip W. Lord and
Francisco M. Couto},
title = {Semantic Similarity in Biomedical Ontologies},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {7},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000443},
doi = {10.1371/JOURNAL.PCBI.1000443},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PesquitaFFLC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/MachadoBC09,
author = {Catia M. Machado and
Hugo P. Bastos and
Francisco M. Couto},
editor = {Sigeru Omatu and
Miguel Rocha and
Jos{\'{e}} Bravo and
Florentino Fern{\'{a}}ndez Riverola and
Emilio Corchado and
Andr{\'{e}}s Bustillo and
Juan M. Corchado},
title = {{GREAT:} Gene Regulation EvAluation Tool},
booktitle = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 10th International Work-Conference
on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
Spain, June 10-12, 2009. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5518},
pages = {930--933},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02481-8\_142},
doi = {10.1007/978-3-642-02481-8\_142},
timestamp = {Tue, 15 Nov 2022 15:22:37 +0100},
biburl = {https://dblp.org/rec/conf/iwann/MachadoBC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/PesquitaGC09,
author = {Catia Pesquita and
Tiago Grego and
Francisco M. Couto},
editor = {Sigeru Omatu and
Miguel Rocha and
Jos{\'{e}} Bravo and
Florentino Fern{\'{a}}ndez Riverola and
Emilio Corchado and
Andr{\'{e}}s Bustillo and
Juan M. Corchado},
title = {Identifying Gene Ontology Areas for Automated Enrichment},
booktitle = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 10th International Work-Conference
on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
Spain, June 10-12, 2009. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5518},
pages = {934--941},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02481-8\_143},
doi = {10.1007/978-3-642-02481-8\_143},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwann/PesquitaGC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/GregoPCR09,
author = {Tiago Grego and
Piotr Pezik and
Francisco M. Couto and
Dietrich Rebholz{-}Schuhmann},
editor = {Sigeru Omatu and
Miguel Rocha and
Jos{\'{e}} Bravo and
Florentino Fern{\'{a}}ndez Riverola and
Emilio Corchado and
Andr{\'{e}}s Bustillo and
Juan M. Corchado},
title = {Identification of Chemical Entities in Patent Documents},
booktitle = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 10th International Work-Conference
on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
Spain, June 10-12, 2009. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5518},
pages = {942--949},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02481-8\_144},
doi = {10.1007/978-3-642-02481-8\_144},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwann/GregoPCR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/PesquitaFC09,
author = {Catia Pesquita and
Daniel Faria and
Francisco M. Couto},
editor = {Sung Y. Shin and
Sascha Ossowski},
title = {Measuring coherence between electronic and manual annotations in biological
databases},
booktitle = {Proceedings of the 2009 {ACM} Symposium on Applied Computing (SAC),
Honolulu, Hawaii, USA, March 9-12, 2009},
pages = {806--807},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1529282.1529452},
doi = {10.1145/1529282.1529452},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sac/PesquitaFC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/igi/09/CoutoSLDCA09,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Vivian Lee and
Emily Dimmer and
Evelyn Camon and
Rolf Apweiler},
editor = {Violaine Prince and
Mathieu Roche},
title = {Verification of Uncurated Protein Annotations},
booktitle = {Information Retrieval in Biomedicine - Natural Language Processing
for Knowledge Integration},
pages = {301--314},
publisher = {{IGI} Global},
year = {2009},
url = {https://doi.org/10.4018/978-1-60566-274-9.ch016},
doi = {10.4018/978-1-60566-274-9.CH016},
timestamp = {Mon, 16 Sep 2019 14:43:09 +0200},
biburl = {https://dblp.org/rec/books/igi/09/CoutoSLDCA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PesquitaFBFFC08,
author = {Catia Pesquita and
Daniel Faria and
Hugo P. Bastos and
Ant{\'{o}}nio E. N. Ferreira and
Andr{\'{e}} O. Falc{\~{a}}o and
Francisco M. Couto},
title = {Metrics for {GO} based protein semantic similarity: a systematic evaluation},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-5}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S5-S4},
doi = {10.1186/1471-2105-9-S5-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PesquitaFBFFC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdim/CoutoGBPTSPB08,
author = {Francisco M. Couto and
Tiago Grego and
Hugo P. Bastos and
Catia Pesquita and
Rafael P. Torres and
Pablo Sanchez and
Leandro Pascual and
Christian Blaschke},
editor = {Pit Pichappan and
Ajith Abraham},
title = {Identifying bioentity recognition errors of rule-based text-mining
systems},
booktitle = {Third {IEEE} International Conference on Digital Information Management
(ICDIM), November 13-16, 2008, London, UK, Proceedings},
pages = {733--738},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/ICDIM.2008.4746791},
doi = {10.1109/ICDIM.2008.4746791},
timestamp = {Wed, 16 Oct 2019 14:14:49 +0200},
biburl = {https://dblp.org/rec/conf/icdim/CoutoGBPTSPB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dke/CoutoSC07,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
title = {Measuring semantic similarity between Gene Ontology terms},
journal = {Data Knowl. Eng.},
volume = {61},
number = {1},
pages = {137--152},
year = {2007},
url = {https://doi.org/10.1016/j.datak.2006.05.003},
doi = {10.1016/J.DATAK.2006.05.003},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dke/CoutoSC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/pt/Couto06,
author = {Francisco M. Couto},
title = {ReBIL: Relating Biological Information through Literature},
school = {University of Lisbon, Portugal},
year = {2006},
url = {https://hdl.handle.net/10451/14312},
timestamp = {Thu, 08 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/pt/Couto06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/CoutoSC06,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
editor = {Philip S. Yu and
Vassilis J. Tsotras and
Edward A. Fox and
Bing Liu},
title = {Validating associations in biological databases},
booktitle = {Proceedings of the 2006 {ACM} {CIKM} International Conference on Information
and Knowledge Management, Arlington, Virginia, USA, November 6-11,
2006},
pages = {142--151},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1183614.1183639},
doi = {10.1145/1183614.1183639},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/CoutoSC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoutoSC05,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
title = {Finding genomic ontology terms in text using evidence content},
journal = {{BMC} Bioinform.},
volume = {6},
number = {{S-1}},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-S1-S21},
doi = {10.1186/1471-2105-6-S1-S21},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CoutoSC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/CoutoSC05,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
editor = {Otthein Herzog and
Hans{-}J{\"{o}}rg Schek and
Norbert Fuhr and
Abdur Chowdhury and
Wilfried Teiken},
title = {Semantic similarity over the gene ontology: family correlation and
selecting disjunctive ancestors},
booktitle = {Proceedings of the 2005 {ACM} {CIKM} International Conference on Information
and Knowledge Management, Bremen, Germany, October 31 - November 5,
2005},
pages = {343--344},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1099554.1099658},
doi = {10.1145/1099554.1099658},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/CoutoSC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/CoutoMS04,
author = {Francisco M. Couto and
Bruno Martins and
M{\'{a}}rio J. Silva},
editor = {Hisham Haddad and
Andrea Omicini and
Roger L. Wainwright and
Lorie M. Liebrock},
title = {Classifying biological articles using web resources},
booktitle = {Proceedings of the 2004 {ACM} Symposium on Applied Computing (SAC),
Nicosia, Cyprus, March 14-17, 2004},
pages = {111--115},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/967900.967925},
doi = {10.1145/967900.967925},
timestamp = {Tue, 06 Nov 2018 11:06:44 +0100},
biburl = {https://dblp.org/rec/conf/sac/CoutoMS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jisbd/CoutoSC03,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
editor = {Ernesto Pimentel and
Nieves R. Brisaboa and
Jaime G{\'{o}}mez},
title = {ProFAL: PROtein Functional Annotation through Literature},
booktitle = {{VIII} Jornadas Ingenier{\'{\i}}a del Software y Bases de Datos
{(JISBD} 2003), 12-14 Noviembre 2003, Alicante},
pages = {747--756},
year = {2003},
timestamp = {Wed, 12 May 2021 10:56:07 +0200},
biburl = {https://dblp.org/rec/conf/jisbd/CoutoSC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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