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ORCIDBibTeX records: Marinka Zitnik
@article{DBLP:journals/natmi/FerruzZOHSSMMDS24,
author = {Noelia Ferruz and
Marinka Zitnik and
Pierre{-}Yves Oudeyer and
Emmie Hine and
Nandana Sengupta and
Yiyu Shi and
Diana Mincu and
Sebastian Porsdam Mann and
Payel Das and
Francesco Stella},
title = {Anniversary {AI} reflections},
journal = {Nat. Mac. Intell.},
volume = {6},
number = {1},
pages = {6--12},
year = {2024},
url = {https://doi.org/10.1038/s42256-023-00784-5},
doi = {10.1038/S42256-023-00784-5},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/FerruzZOHSSMMDS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/Huang0WWZLGHLZL24,
author = {Yue Huang and
Lichao Sun and
Haoran Wang and
Siyuan Wu and
Qihui Zhang and
Yuan Li and
Chujie Gao and
Yixin Huang and
Wenhan Lyu and
Yixuan Zhang and
Xiner Li and
Hanchi Sun and
Zhengliang Liu and
Yixin Liu and
Yijue Wang and
Zhikun Zhang and
Bertie Vidgen and
Bhavya Kailkhura and
Caiming Xiong and
Chaowei Xiao and
Chunyuan Li and
Eric P. Xing and
Furong Huang and
Hao Liu and
Heng Ji and
Hongyi Wang and
Huan Zhang and
Huaxiu Yao and
Manolis Kellis and
Marinka Zitnik and
Meng Jiang and
Mohit Bansal and
James Zou and
Jian Pei and
Jian Liu and
Jianfeng Gao and
Jiawei Han and
Jieyu Zhao and
Jiliang Tang and
Jindong Wang and
Joaquin Vanschoren and
John C. Mitchell and
Kai Shu and
Kaidi Xu and
Kai{-}Wei Chang and
Lifang He and
Lifu Huang and
Michael Backes and
Neil Zhenqiang Gong and
Philip S. Yu and
Pin{-}Yu Chen and
Quanquan Gu and
Ran Xu and
Rex Ying and
Shuiwang Ji and
Suman Jana and
Tianlong Chen and
Tianming Liu and
Tianyi Zhou and
William Wang and
Xiang Li and
Xiangliang Zhang and
Xiao Wang and
Xing Xie and
Xun Chen and
Xuyu Wang and
Yan Liu and
Yanfang Ye and
Yinzhi Cao and
Yong Chen and
Yue Zhao},
title = {Position: TrustLLM: Trustworthiness in Large Language Models},
booktitle = {Forty-first International Conference on Machine Learning, {ICML} 2024,
Vienna, Austria, July 21-27, 2024},
publisher = {OpenReview.net},
year = {2024},
url = {https://openreview.net/forum?id=bWUU0LwwMp},
timestamp = {Mon, 02 Sep 2024 16:45:29 +0200},
biburl = {https://dblp.org/rec/conf/icml/Huang0WWZLGHLZL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/LiuCF0ZW24,
author = {Songtao Liu and
Jinghui Chen and
Tianfan Fu and
Lu Lin and
Marinka Zitnik and
Dinghao Wu},
title = {Graph Adversarial Diffusion Convolution},
booktitle = {Forty-first International Conference on Machine Learning, {ICML} 2024,
Vienna, Austria, July 21-27, 2024},
publisher = {OpenReview.net},
year = {2024},
url = {https://openreview.net/forum?id=ICvWruTEDH},
timestamp = {Mon, 02 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/LiuCF0ZW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2401-05561,
author = {Lichao Sun and
Yue Huang and
Haoran Wang and
Siyuan Wu and
Qihui Zhang and
Chujie Gao and
Yixin Huang and
Wenhan Lyu and
Yixuan Zhang and
Xiner Li and
Zhengliang Liu and
Yixin Liu and
Yijue Wang and
Zhikun Zhang and
Bhavya Kailkhura and
Caiming Xiong and
Chaowei Xiao and
Chunyuan Li and
Eric P. Xing and
Furong Huang and
Hao Liu and
Heng Ji and
Hongyi Wang and
Huan Zhang and
Huaxiu Yao and
Manolis Kellis and
Marinka Zitnik and
Meng Jiang and
Mohit Bansal and
James Zou and
Jian Pei and
Jian Liu and
Jianfeng Gao and
Jiawei Han and
Jieyu Zhao and
Jiliang Tang and
Jindong Wang and
John C. Mitchell and
Kai Shu and
Kaidi Xu and
Kai{-}Wei Chang and
Lifang He and
Lifu Huang and
Michael Backes and
Neil Zhenqiang Gong and
Philip S. Yu and
Pin{-}Yu Chen and
Quanquan Gu and
Ran Xu and
Rex Ying and
Shuiwang Ji and
Suman Jana and
Tianlong Chen and
Tianming Liu and
Tianyi Zhou and
William Wang and
Xiang Li and
Xiangliang Zhang and
Xiao Wang and
Xing Xie and
Xun Chen and
Xuyu Wang and
Yan Liu and
Yanfang Ye and
Yinzhi Cao and
Yue Zhao},
title = {TrustLLM: Trustworthiness in Large Language Models},
journal = {CoRR},
volume = {abs/2401.05561},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2401.05561},
doi = {10.48550/ARXIV.2401.05561},
eprinttype = {arXiv},
eprint = {2401.05561},
timestamp = {Mon, 19 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2401-05561.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-00131,
author = {Shanghua Gao and
Teddy Koker and
Owen Queen and
Thomas Hartvigsen and
Theodoros Tsiligkaridis and
Marinka Zitnik},
title = {UniTS: Building a Unified Time Series Model},
journal = {CoRR},
volume = {abs/2403.00131},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.00131},
doi = {10.48550/ARXIV.2403.00131},
eprinttype = {arXiv},
eprint = {2403.00131},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-00131.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-01628,
author = {Hyewon Jeong and
Sarah Jabbour and
Yuzhe Yang and
Rahul Thapa and
Hussein Mozannar and
William Jongwon Han and
Nikita Mehandru and
Michael Wornow and
Vladislav Lialin and
Xin Liu and
Alejandro Lozano and
Jiacheng Zhu and
Rafal Dariusz Kocielnik and
Keith Harrigian and
Haoran Zhang and
Edward Lee and
Milos Vukadinovic and
Aparna Balagopalan and
Vincent Jeanselme and
Katherine Matton and
Ilker Demirel and
Jason A. Fries and
Parisa Rashidi and
Brett K. Beaulieu{-}Jones and
Xuhai Orson Xu and
Matthew B. A. McDermott and
Tristan Naumann and
Monica Agrawal and
Marinka Zitnik and
Berk Ustun and
Edward Choi and
Kristen Yeom and
Gamze G{\"{u}}rsoy and
Marzyeh Ghassemi and
Emma Pierson and
George H. Chen and
Sanjat Kanjilal and
Michael Oberst and
Linying Zhang and
Harvineet Singh and
Tom Hartvigsen and
Helen Zhou and
Chinasa T. Okolo},
title = {Recent Advances, Applications, and Open Challenges in Machine Learning
for Health: Reflections from Research Roundtables at {ML4H} 2023 Symposium},
journal = {CoRR},
volume = {abs/2403.01628},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.01628},
doi = {10.48550/ARXIV.2403.01628},
eprinttype = {arXiv},
eprint = {2403.01628},
timestamp = {Thu, 15 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-01628.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2404-02831,
author = {Shanghua Gao and
Ada Fang and
Yepeng Huang and
Valentina Giunchiglia and
Ayush Noori and
Jonathan Richard Schwarz and
Yasha Ektefaie and
Jovana Kondic and
Marinka Zitnik},
title = {Empowering Biomedical Discovery with {AI} Agents},
journal = {CoRR},
volume = {abs/2404.02831},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2404.02831},
doi = {10.48550/ARXIV.2404.02831},
eprinttype = {arXiv},
eprint = {2404.02831},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2404-02831.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2405-09594,
author = {Sameer Tajdin Khanna and
Daniel Michael and
Marinka Zitnik and
Pranav Rajpurkar},
title = {Learning Generalized Medical Image Representations through Image-Graph
Contrastive Pretraining},
journal = {CoRR},
volume = {abs/2405.09594},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2405.09594},
doi = {10.48550/ARXIV.2405.09594},
eprinttype = {arXiv},
eprint = {2405.09594},
timestamp = {Mon, 24 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2405-09594.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-02059,
author = {Songtao Liu and
Jinghui Chen and
Tianfan Fu and
Lu Lin and
Marinka Zitnik and
Dinghao Wu},
title = {Graph Adversarial Diffusion Convolution},
journal = {CoRR},
volume = {abs/2406.02059},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.02059},
doi = {10.48550/ARXIV.2406.02059},
eprinttype = {arXiv},
eprint = {2406.02059},
timestamp = {Wed, 14 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-02059.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-03403,
author = {Kangyu Zheng and
Yingzhou Lu and
Zaixi Zhang and
Zhongwei Wan and
Yao Ma and
Marinka Zitnik and
Tianfan Fu},
title = {Structure-based Drug Design Benchmark: Do 3D Methods Really Dominate?},
journal = {CoRR},
volume = {abs/2406.03403},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.03403},
doi = {10.48550/ARXIV.2406.03403},
eprinttype = {arXiv},
eprint = {2406.03403},
timestamp = {Fri, 05 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-03403.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2407-00631,
author = {Jintai Chen and
Yaojun Hu and
Yue Wang and
Yingzhou Lu and
Xu Cao and
Miao Lin and
Hongxia Xu and
Jian Wu and
Cao Xiao and
Jimeng Sun and
Lucas Glass and
Kexin Huang and
Marinka Zitnik and
Tianfan Fu},
title = {TrialBench: Multi-Modal Artificial Intelligence-Ready Clinical Trial
Datasets},
journal = {CoRR},
volume = {abs/2407.00631},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2407.00631},
doi = {10.48550/ARXIV.2407.00631},
eprinttype = {arXiv},
eprint = {2407.00631},
timestamp = {Fri, 09 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2407-00631.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2407-06483,
author = {Arinbjorn Kolbeinsson and
Kyle O'Brien and
Tianjin Huang and
Shanghua Gao and
Shiwei Liu and
Jonathan Richard Schwarz and
Anurag Vaidya and
Faisal Mahmood and
Marinka Zitnik and
Tianlong Chen and
Thomas Hartvigsen},
title = {Composable Interventions for Language Models},
journal = {CoRR},
volume = {abs/2407.06483},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2407.06483},
doi = {10.48550/ARXIV.2407.06483},
eprinttype = {arXiv},
eprint = {2407.06483},
timestamp = {Fri, 16 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2407-06483.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2408-03511,
author = {Shanshan Zhong and
Shanghua Gao and
Zhongzhan Huang and
Wushao Wen and
Marinka Zitnik and
Pan Zhou},
title = {MoExtend: Tuning New Experts for Modality and Task Extension},
journal = {CoRR},
volume = {abs/2408.03511},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2408.03511},
doi = {10.48550/ARXIV.2408.03511},
eprinttype = {arXiv},
eprint = {2408.03511},
timestamp = {Fri, 13 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2408-03511.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenZRPLCZHCBHGCLLZC23,
author = {Jun Wen and
Xiang Zhang and
Everett Neil Rush and
Vidul Ayakulangara Panickan and
Xingyu Li and
Tianrun Cai and
Doudou Zhou and
Yuk{-}Lam Ho and
Lauren Costa and
Edmon Begoli and
Chuan Hong and
J. Michael Gaziano and
Kelly Cho and
Junwei Lu and
Katherine P. Liao and
Marinka Zitnik and
Tianxi Cai},
title = {Multimodal representation learning for predicting molecule-disease
relations},
journal = {Bioinform.},
volume = {39},
number = {2},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad085},
doi = {10.1093/BIOINFORMATICS/BTAD085},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenZRPLCZHCBHGCLLZC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NooriLTZ23,
author = {Ayush Noori and
Michelle M. Li and
Amelia L. M. Tan and
Marinka Zitnik},
title = {\texttt{Metapaths}: similarity search in heterogeneous knowledge graphs
via meta-paths},
journal = {Bioinform.},
volume = {39},
number = {5},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad297},
doi = {10.1093/BIOINFORMATICS/BTAD297},
timestamp = {Sat, 27 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NooriLTZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LinL0CZ23,
author = {Yucong Lin and
Keming Lu and
Sheng Yu and
Tianxi Cai and
Marinka Zitnik},
title = {Multimodal learning on graphs for disease relation extraction},
journal = {J. Biomed. Informatics},
volume = {143},
pages = {104415},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104415},
doi = {10.1016/J.JBI.2023.104415},
timestamp = {Sat, 05 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/LinL0CZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/ScottSAHPMRHSGGTBMBBBBCDHHHJJKKKK23,
author = {Ryan T. Scott and
Lauren M. Sanders and
Erik L. Antonsen and
Jaden J. A. Hastings and
Seung{-}Min Park and
Graham Mackintosh and
Robert J. Reynolds and
Adrienne L. Hoarfrost and
Aenor Sawyer and
Casey S. Greene and
Benjamin S. Glicksberg and
Corey A. Theriot and
Daniel C. Berrios and
Jack Miller and
Joel Babdor and
Richard Barker and
Sergio E. Baranzini and
Afshin Beheshti and
Stuart J. Chalk and
Guillermo M. Delgado{-}Aparicio and
Melissa A. Haendel and
Arif A. Hamid and
Philip Heller and
Daniel Jamieson and
Katelyn J. Jarvis and
John Kalantari and
Kia Khezeli and
Svetlana V. Komarova and
Matthieu Komorowski and
Prachi Kothiyal and
Ashish Mahabal and
Uri Manor and
H{\'{e}}ctor Garc{\'{\i}}a Mart{\'{\i}}n and
Christopher E. Mason and
Mona Matar and
George I. Mias and
Jerry G. Myers Jr. and
Charlotte A. Nelson and
Jonathan Oribello and
Patricia Parsons{-}Wingerter and
R. K. Prabhu and
Amina Ann Qutub and
Jon Rask and
Amanda Saravia{-}Butler and
Suchi Saria and
Nitin Kumar Singh and
Michael Snyder and
Frank Soboczenski and
Karthik Soman and
David Van Valen and
Kasthuri Venkateswaran and
Liz Warren and
Liz Worthey and
Jason H. Yang and
Marinka Zitnik and
Sylvain V. Costes},
title = {Biomonitoring and precision health in deep space supported by artificial
intelligence},
journal = {Nat. Mac. Intell.},
volume = {5},
number = {3},
pages = {196--207},
year = {2023},
url = {https://doi.org/10.1038/s42256-023-00617-5},
doi = {10.1038/S42256-023-00617-5},
timestamp = {Tue, 14 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/natmi/ScottSAHPMRHSGGTBMBBBBCDHHHJJKKKK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/SandersSYQMBHRMHCKKABBBBDGGHHHJJK23,
author = {Lauren M. Sanders and
Ryan T. Scott and
Jason H. Yang and
Amina Ann Qutub and
H{\'{e}}ctor Garc{\'{\i}}a Mart{\'{\i}}n and
Daniel C. Berrios and
Jaden J. A. Hastings and
Jon Rask and
Graham Mackintosh and
Adrienne L. Hoarfrost and
Stuart J. Chalk and
John Kalantari and
Kia Khezeli and
Erik L. Antonsen and
Joel Babdor and
Richard Barker and
Sergio E. Baranzini and
Afshin Beheshti and
Guillermo M. Delgado{-}Aparicio and
Benjamin S. Glicksberg and
Casey S. Greene and
Melissa A. Haendel and
Arif A. Hamid and
Philip Heller and
Daniel Jamieson and
Katelyn J. Jarvis and
Svetlana V. Komarova and
Matthieu Komorowski and
Prachi Kothiyal and
Ashish Mahabal and
Uri Manor and
Christopher E. Mason and
Mona Matar and
George I. Mias and
Jack Miller and
Jerry G. Myers Jr. and
Charlotte A. Nelson and
Jonathan Oribello and
Seung{-}Min Park and
Patricia Parsons{-}Wingerter and
R. K. Prabhu and
Robert J. Reynolds and
Amanda Saravia{-}Butler and
Suchi Saria and
Aenor Sawyer and
Nitin Kumar Singh and
Michael Snyder and
Frank Soboczenski and
Karthik Soman and
Corey A. Theriot and
David Van Valen and
Kasthuri Venkateswaran and
Liz Warren and
Liz Worthey and
Marinka Zitnik and
Sylvain V. Costes},
title = {Biological research and self-driving labs in deep space supported
by artificial intelligence},
journal = {Nat. Mac. Intell.},
volume = {5},
number = {3},
pages = {208--219},
year = {2023},
url = {https://doi.org/10.1038/s42256-023-00618-4},
doi = {10.1038/S42256-023-00618-4},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/SandersSYQMBHRMHCKKABBBBDGGHHHJJK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/EktefaieDNFZ23,
author = {Yasha Ektefaie and
George Dasoulas and
Ayush Noori and
Maha Farhat and
Marinka Zitnik},
title = {Multimodal learning with graphs},
journal = {Nat. Mac. Intell.},
volume = {5},
number = {4},
pages = {340--350},
year = {2023},
url = {https://doi.org/10.1038/s42256-023-00624-6},
doi = {10.1038/S42256-023-00624-6},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/natmi/EktefaieDNFZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/McDermottYSZ23,
author = {Matthew B. A. McDermott and
Brendan Yap and
Peter Szolovits and
Marinka Zitnik},
title = {Structure-inducing pre-training},
journal = {Nat. Mac. Intell.},
volume = {5},
number = {6},
pages = {612--621},
year = {2023},
url = {https://doi.org/10.1038/s42256-023-00647-z},
doi = {10.1038/S42256-023-00647-Z},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/McDermottYSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/WangFD0HLCLKDAB23,
author = {Hanchen Wang and
Tianfan Fu and
Yuanqi Du and
Wenhao Gao and
Kexin Huang and
Ziming Liu and
Payal Chandak and
Shengchao Liu and
Peter Van Katwyk and
Andreea Deac and
Anima Anandkumar and
Karianne Bergen and
Carla P. Gomes and
Shirley Ho and
Pushmeet Kohli and
Joan Lasenby and
Jure Leskovec and
Tie{-}Yan Liu and
Arjun Manrai and
Debora S. Marks and
Bharath Ramsundar and
Le Song and
Jimeng Sun and
Jian Tang and
Petar Velickovic and
Max Welling and
Linfeng Zhang and
Connor W. Coley and
Yoshua Bengio and
Marinka Zitnik},
title = {Scientific discovery in the age of artificial intelligence},
journal = {Nat.},
volume = {620},
number = {7972},
pages = {47--60},
year = {2023},
url = {https://doi.org/10.1038/s41586-023-06221-2},
doi = {10.1038/S41586-023-06221-2},
timestamp = {Mon, 29 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/WangFD0HLCLKDAB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/WangHCZG23,
author = {Qianwen Wang and
Kexin Huang and
Payal Chandak and
Marinka Zitnik and
Nils Gehlenborg},
title = {Extending the Nested Model for User-Centric {XAI:} {A} Design Study
on GNN-based Drug Repurposing},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {29},
number = {1},
pages = {1266--1276},
year = {2023},
url = {https://doi.org/10.1109/TVCG.2022.3209435},
doi = {10.1109/TVCG.2022.3209435},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tvcg/WangHCZG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/ChengDHAZ23,
author = {Jiali Cheng and
George Dasoulas and
Huan He and
Chirag Agarwal and
Marinka Zitnik},
title = {GNNDelete: {A} General Strategy for Unlearning in Graph Neural Networks},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/forum?id=X9yCkmT5Qrl},
timestamp = {Wed, 24 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/ChengDHAZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/HeQKCTZ23,
author = {Huan He and
Owen Queen and
Teddy Koker and
Consuelo Cuevas and
Theodoros Tsiligkaridis and
Marinka Zitnik},
editor = {Andreas Krause and
Emma Brunskill and
Kyunghyun Cho and
Barbara Engelhardt and
Sivan Sabato and
Jonathan Scarlett},
title = {Domain Adaptation for Time Series Under Feature and Label Shifts},
booktitle = {International Conference on Machine Learning, {ICML} 2023, 23-29 July
2023, Honolulu, Hawaii, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {202},
pages = {12746--12774},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v202/he23b.html},
timestamp = {Mon, 28 Aug 2023 17:23:08 +0200},
biburl = {https://dblp.org/rec/conf/icml/HeQKCTZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/0001ZDKHMTZZ23,
author = {Jiaqi Ma and
Jiong Zhu and
Yuxiao Dong and
Danai Koutra and
Jingrui He and
Qiaozhu Mei and
Anton Tsitsulin and
Xingjian Zhang and
Marinka Zitnik},
editor = {Ambuj K. Singh and
Yizhou Sun and
Leman Akoglu and
Dimitrios Gunopulos and
Xifeng Yan and
Ravi Kumar and
Fatma Ozcan and
Jieping Ye},
title = {The 3rd Workshop on Graph Learning Benchmarks {(GLB} 2023)},
booktitle = {Proceedings of the 29th {ACM} {SIGKDD} Conference on Knowledge Discovery
and Data Mining, {KDD} 2023, Long Beach, CA, USA, August 6-10, 2023},
pages = {5870--5871},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3580305.3599224},
doi = {10.1145/3580305.3599224},
timestamp = {Thu, 01 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kdd/0001ZDKHMTZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ml4h/KhannaMZR23,
author = {Sameer Tajdin Khanna and
Daniel Michael and
Marinka Zitnik and
Pranav Rajpurkar},
editor = {Stefan Hegselmann and
Antonio Parziale and
Divya Shanmugam and
Shengpu Tang and
Mercy Nyamewaa Asiedu and
Serina Chang and
Tom Hartvigsen and
Harvineet Singh},
title = {Learning Generalized Medical Image Representations Through Image-Graph
Contrastive Pretraining},
booktitle = {Machine Learning for Health, ML4H@NeurIPS 2023, 10 December 2023,
New Orleans, Louisiana, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {225},
pages = {232--243},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v225/khanna23a.html},
timestamp = {Tue, 20 Feb 2024 16:30:24 +0100},
biburl = {https://dblp.org/rec/conf/ml4h/KhannaMZR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/QueenHKHTZ23,
author = {Owen Queen and
Tom Hartvigsen and
Teddy Koker and
Huan He and
Theodoros Tsiligkaridis and
Marinka Zitnik},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {Encoding Time-Series Explanations through Self-Supervised Model Behavior
Consistency},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/65ea878cb90b440e8b4cd34fe0959914-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/QueenHKHTZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ZhangLHZ023,
author = {Zaixi Zhang and
Zepu Lu and
Zhongkai Hao and
Marinka Zitnik and
Qi Liu},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {Full-Atom Protein Pocket Design via Iterative Refinement},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/365a6f71486ecdfa7eb8d61cbe168782-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/ZhangLHZ023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-03133,
author = {Huan He and
Owen Queen and
Teddy Koker and
Consuelo Cuevas and
Theodoros Tsiligkaridis and
Marinka Zitnik},
title = {Domain Adaptation for Time Series Under Feature and Label Shifts},
journal = {CoRR},
volume = {abs/2302.03133},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.03133},
doi = {10.48550/ARXIV.2302.03133},
eprinttype = {arXiv},
eprint = {2302.03133},
timestamp = {Fri, 10 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-03133.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-13406,
author = {Jiali Cheng and
George Dasoulas and
Huan He and
Chirag Agarwal and
Marinka Zitnik},
title = {GNNDelete: {A} General Strategy for Unlearning in Graph Neural Networks},
journal = {CoRR},
volume = {abs/2302.13406},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.13406},
doi = {10.48550/ARXIV.2302.13406},
eprinttype = {arXiv},
eprint = {2302.13406},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-13406.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-02109,
author = {Owen Queen and
Thomas Hartvigsen and
Teddy Koker and
Huan He and
Theodoros Tsiligkaridis and
Marinka Zitnik},
title = {Encoding Time-Series Explanations through Self-Supervised Model Behavior
Consistency},
journal = {CoRR},
volume = {abs/2306.02109},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.02109},
doi = {10.48550/ARXIV.2306.02109},
eprinttype = {arXiv},
eprint = {2306.02109},
timestamp = {Mon, 12 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-02109.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-08423,
author = {Xuan Zhang and
Limei Wang and
Jacob Helwig and
Youzhi Luo and
Cong Fu and
Yaochen Xie and
Meng Liu and
Yuchao Lin and
Zhao Xu and
Keqiang Yan and
Keir Adams and
Maurice Weiler and
Xiner Li and
Tianfan Fu and
Yucheng Wang and
Haiyang Yu and
Yuqing Xie and
Xiang Fu and
Alex Strasser and
Shenglong Xu and
Yi Liu and
Yuanqi Du and
Alexandra Saxton and
Hongyi Ling and
Hannah Lawrence and
Hannes St{\"{a}}rk and
Shurui Gui and
Carl Edwards and
Nicholas Gao and
Adriana Ladera and
Tailin Wu and
Elyssa F. Hofgard and
Aria Mansouri Tehrani and
Rui Wang and
Ameya Daigavane and
Montgomery Bohde and
Jerry Kurtin and
Qian Huang and
Tuong Phung and
Minkai Xu and
Chaitanya K. Joshi and
Simon V. Mathis and
Kamyar Azizzadenesheli and
Ada Fang and
Al{\'{a}}n Aspuru{-}Guzik and
Erik J. Bekkers and
Michael M. Bronstein and
Marinka Zitnik and
Anima Anandkumar and
Stefano Ermon and
Pietro Li{\`{o}} and
Rose Yu and
Stephan G{\"{u}}nnemann and
Jure Leskovec and
Heng Ji and
Jimeng Sun and
Regina Barzilay and
Tommi S. Jaakkola and
Connor W. Coley and
Xiaoning Qian and
Xiaofeng Qian and
Tess E. Smidt and
Shuiwang Ji},
title = {Artificial Intelligence for Science in Quantum, Atomistic, and Continuum
Systems},
journal = {CoRR},
volume = {abs/2307.08423},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.08423},
doi = {10.48550/ARXIV.2307.08423},
eprinttype = {arXiv},
eprint = {2307.08423},
timestamp = {Thu, 08 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-08423.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-13767,
author = {Ruth Johnson and
Michelle M. Li and
Ayush Noori and
Owen Queen and
Marinka Zitnik},
title = {Graph {AI} in Medicine},
journal = {CoRR},
volume = {abs/2310.13767},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.13767},
doi = {10.48550/ARXIV.2310.13767},
eprinttype = {arXiv},
eprint = {2310.13767},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-13767.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-02439,
author = {Shanshan Zhong and
Zhongzhan Huang and
Shanghua Gao and
Wushao Wen and
Liang Lin and
Marinka Zitnik and
Pan Zhou},
title = {Let's Think Outside the Box: Exploring Leap-of-Thought in Large Language
Models with Creative Humor Generation},
journal = {CoRR},
volume = {abs/2312.02439},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.02439},
doi = {10.48550/ARXIV.2312.02439},
eprinttype = {arXiv},
eprint = {2312.02439},
timestamp = {Thu, 20 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-02439.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-05690,
author = {Tessa Han and
Yasha Ektefaie and
Maha Farhat and
Marinka Zitnik and
Himabindu Lakkaraju},
title = {Is Ignorance Bliss? The Role of Post Hoc Explanation Faithfulness
and Alignment in Model Trust in Laypeople and Domain Experts},
journal = {CoRR},
volume = {abs/2312.05690},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.05690},
doi = {10.48550/ARXIV.2312.05690},
eprinttype = {arXiv},
eprint = {2312.05690},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-05690.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/CombiABHMZH22,
author = {Carlo Combi and
Beatrice Amico and
Riccardo Bellazzi and
Andreas Holzinger and
Jason H. Moore and
Marinka Zitnik and
John H. Holmes},
title = {A manifesto on explainability for artificial intelligence in medicine},
journal = {Artif. Intell. Medicine},
volume = {133},
pages = {102423},
year = {2022},
url = {https://doi.org/10.1016/j.artmed.2022.102423},
doi = {10.1016/J.ARTMED.2022.102423},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/artmed/CombiABHMZH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuzziZ22,
author = {Pietro Hiram Guzzi and
Marinka Zitnik},
title = {Editorial Deep Learning and Graph Embeddings for Network Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {653--654},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3110279},
doi = {10.1109/TCBB.2021.3110279},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuzziZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/AgarwalZL22,
author = {Chirag Agarwal and
Marinka Zitnik and
Himabindu Lakkaraju},
editor = {Gustau Camps{-}Valls and
Francisco J. R. Ruiz and
Isabel Valera},
title = {Probing {GNN} Explainers: {A} Rigorous Theoretical and Empirical Analysis
of {GNN} Explanation Methods},
booktitle = {International Conference on Artificial Intelligence and Statistics,
{AISTATS} 2022, 28-30 March 2022, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {151},
pages = {8969--8996},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v151/agarwal22b.html},
timestamp = {Sat, 30 Sep 2023 09:34:08 +0200},
biburl = {https://dblp.org/rec/conf/aistats/AgarwalZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/ZhangZTZ22,
author = {Xiang Zhang and
Marko Zeman and
Theodoros Tsiligkaridis and
Marinka Zitnik},
title = {Graph-Guided Network for Irregularly Sampled Multivariate Time Series},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=Kwm8I7dU-l5},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/ZhangZTZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/AgarwalKSPJPZL22,
author = {Chirag Agarwal and
Satyapriya Krishna and
Eshika Saxena and
Martin Pawelczyk and
Nari Johnson and
Isha Puri and
Marinka Zitnik and
Himabindu Lakkaraju},
editor = {Sanmi Koyejo and
S. Mohamed and
A. Agarwal and
Danielle Belgrave and
K. Cho and
A. Oh},
title = {OpenXAI: Towards a Transparent Evaluation of Model Explanations},
booktitle = {Advances in Neural Information Processing Systems 35: Annual Conference
on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans,
LA, USA, November 28 - December 9, 2022},
year = {2022},
url = {http://papers.nips.cc/paper\_files/paper/2022/hash/65398a0eba88c9b4a1c38ae405b125ef-Abstract-Datasets\_and\_Benchmarks.html},
timestamp = {Mon, 08 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/AgarwalKSPJPZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ZhangZTZ22,
author = {Xiang Zhang and
Ziyuan Zhao and
Theodoros Tsiligkaridis and
Marinka Zitnik},
editor = {Sanmi Koyejo and
S. Mohamed and
A. Agarwal and
Danielle Belgrave and
K. Cho and
A. Oh},
title = {Self-Supervised Contrastive Pre-Training For Time Series via Time-Frequency
Consistency},
booktitle = {Advances in Neural Information Processing Systems 35: Annual Conference
on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans,
LA, USA, November 28 - December 9, 2022},
year = {2022},
url = {http://papers.nips.cc/paper\_files/paper/2022/hash/194b8dac525581c346e30a2cebe9a369-Abstract-Conference.html},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/ZhangZTZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-06877,
author = {Chirag Agarwal and
Nari Johnson and
Martin Pawelczyk and
Satyapriya Krishna and
Eshika Saxena and
Marinka Zitnik and
Himabindu Lakkaraju},
title = {Rethinking Stability for Attribution-based Explanations},
journal = {CoRR},
volume = {abs/2203.06877},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2203.06877},
doi = {10.48550/ARXIV.2203.06877},
eprinttype = {arXiv},
eprint = {2203.06877},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2203-06877.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-08893,
author = {Yucong Lin and
Keming Lu and
Sheng Yu and
Tianxi Cai and
Marinka Zitnik},
title = {Multimodal Learning on Graphs for Disease Relation Extraction},
journal = {CoRR},
volume = {abs/2203.08893},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2203.08893},
doi = {10.48550/ARXIV.2203.08893},
eprinttype = {arXiv},
eprint = {2203.08893},
timestamp = {Mon, 28 Mar 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2203-08893.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-08496,
author = {Xiang Zhang and
Ziyuan Zhao and
Theodoros Tsiligkaridis and
Marinka Zitnik},
title = {Self-Supervised Contrastive Pre-Training For Time Series via Time-Frequency
Consistency},
journal = {CoRR},
volume = {abs/2206.08496},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.08496},
doi = {10.48550/ARXIV.2206.08496},
eprinttype = {arXiv},
eprint = {2206.08496},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-08496.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-11104,
author = {Chirag Agarwal and
Eshika Saxena and
Satyapriya Krishna and
Martin Pawelczyk and
Nari Johnson and
Isha Puri and
Marinka Zitnik and
Himabindu Lakkaraju},
title = {OpenXAI: Towards a Transparent Evaluation of Model Explanations},
journal = {CoRR},
volume = {abs/2206.11104},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.11104},
doi = {10.48550/ARXIV.2206.11104},
eprinttype = {arXiv},
eprint = {2206.11104},
timestamp = {Mon, 27 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-11104.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-09339,
author = {Chirag Agarwal and
Owen Queen and
Himabindu Lakkaraju and
Marinka Zitnik},
title = {Evaluating Explainability for Graph Neural Networks},
journal = {CoRR},
volume = {abs/2208.09339},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.09339},
doi = {10.48550/ARXIV.2208.09339},
eprinttype = {arXiv},
eprint = {2208.09339},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-09339.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-03299,
author = {Yasha Ektefaie and
George Dasoulas and
Ayush Noori and
Maha Farhat and
Marinka Zitnik},
title = {Geometric multimodal representation learning},
journal = {CoRR},
volume = {abs/2209.03299},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.03299},
doi = {10.48550/ARXIV.2209.03299},
eprinttype = {arXiv},
eprint = {2209.03299},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-03299.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangFGZXS21,
author = {Kexin Huang and
Tianfan Fu and
Lucas M. Glass and
Marinka Zitnik and
Cao Xiao and
Jimeng Sun},
title = {DeepPurpose: a deep learning library for drug-target interaction prediction},
journal = {Bioinform.},
volume = {36},
number = {22-23},
pages = {5545--5547},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa1005},
doi = {10.1093/BIOINFORMATICS/BTAA1005},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangFGZXS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ncs/0012SZ21,
author = {Xiang Zhang and
Marissa Sumathipala and
Marinka Zitnik},
title = {Population-scale identification of differential adverse events before
and during a pandemic},
journal = {Nat. Comput. Sci.},
volume = {1},
number = {10},
pages = {666--677},
year = {2021},
url = {https://doi.org/10.1038/s43588-021-00138-4},
doi = {10.1038/S43588-021-00138-4},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ncs/0012SZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/WanyanHJZNSFPVZ21,
author = {Tingyi Wanyan and
Hossein Honarvar and
Suraj K. Jaladanki and
Chengxi Zang and
Nidhi Naik and
Sulaiman Somani and
Jessica K. De Freitas and
Ishan Paranjpe and
Akhil Vaid and
Jing Zhang and
Riccardo Miotto and
Zhangyang Wang and
Girish N. Nadkarni and
Marinka Zitnik and
Ariful Azad and
Fei Wang and
Ying Ding and
Benjamin S. Glicksberg},
title = {Contrastive learning improves critical event prediction in {COVID-19}
patients},
journal = {Patterns},
volume = {2},
number = {12},
pages = {100389},
year = {2021},
url = {https://doi.org/10.1016/j.patter.2021.100389},
doi = {10.1016/J.PATTER.2021.100389},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/patterns/WanyanHJZNSFPVZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbd/DongZ21,
author = {Yuxiao Dong and
Marinka Zitnik},
title = {Guest Editorial: {AI} for {COVID-19}},
journal = {{IEEE} Trans. Big Data},
volume = {7},
number = {1},
pages = {1--2},
year = {2021},
url = {https://doi.org/10.1109/TBDATA.2021.3057121},
doi = {10.1109/TBDATA.2021.3057121},
timestamp = {Tue, 23 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tbd/DongZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LuoWZJ21,
author = {Yuan Luo and
Fei Wang and
Marinka Zitnik and
Shuiwang Ji},
title = {Graph Based Machine Learning for Healthcare: State of the Art, Challenges,
and Opportunities},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t002-1.4626813/t002-1.4626814/3577358-1.4626917/3577429-1.4626914},
timestamp = {Wed, 14 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LuoWZJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HuangFG0RLCXSZ21,
author = {Kexin Huang and
Tianfan Fu and
Wenhao Gao and
Yue Zhao and
Yusuf Roohani and
Jure Leskovec and
Connor W. Coley and
Cao Xiao and
Jimeng Sun and
Marinka Zitnik},
editor = {Joaquin Vanschoren and
Sai{-}Kit Yeung},
title = {Therapeutics Data Commons: Machine Learning Datasets and Tasks for
Drug Discovery and Development},
booktitle = {Proceedings of the Neural Information Processing Systems Track on
Datasets and Benchmarks 1, NeurIPS Datasets and Benchmarks 2021, December
2021, virtual},
year = {2021},
url = {https://datasets-benchmarks-proceedings.neurips.cc/paper/2021/hash/4c56ff4ce4aaf9573aa5dff913df997a-Abstract-round1.html},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/HuangFG0RLCXSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/AgarwalLZ21,
author = {Chirag Agarwal and
Himabindu Lakkaraju and
Marinka Zitnik},
editor = {Cassio P. de Campos and
Marloes H. Maathuis and
Erik Quaeghebeur},
title = {Towards a unified framework for fair and stable graph representation
learning},
booktitle = {Proceedings of the Thirty-Seventh Conference on Uncertainty in Artificial
Intelligence, {UAI} 2021, Virtual Event, 27-30 July 2021},
series = {Proceedings of Machine Learning Research},
volume = {161},
pages = {2114--2124},
publisher = {{AUAI} Press},
year = {2021},
url = {https://proceedings.mlr.press/v161/agarwal21b.html},
timestamp = {Fri, 17 Dec 2021 17:06:27 +0100},
biburl = {https://dblp.org/rec/conf/uai/AgarwalLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-04013,
author = {Tingyi Wanyan and
Hossein Honarvar and
Suraj K. Jaladanki and
Chengxi Zang and
Nidhi Naik and
Sulaiman Somani and
Jessica K. De Freitas and
Ishan Paranjpe and
Akhil Vaid and
Riccardo Miotto and
Girish N. Nadkarni and
Marinka Zitnik and
Ariful Azad and
Fei Wang and
Ying Ding and
Benjamin S. Glicksberg},
title = {Contrastive Learning Improves Critical Event Prediction in {COVID-19}
Patients},
journal = {CoRR},
volume = {abs/2101.04013},
year = {2021},
url = {https://arxiv.org/abs/2101.04013},
eprinttype = {arXiv},
eprint = {2101.04013},
timestamp = {Fri, 10 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2101-04013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-09548,
author = {Kexin Huang and
Tianfan Fu and
Wenhao Gao and
Yue Zhao and
Yusuf Roohani and
Jure Leskovec and
Connor W. Coley and
Cao Xiao and
Jimeng Sun and
Marinka Zitnik},
title = {Therapeutics Data Commons: Machine Learning Datasets and Tasks for
Therapeutics},
journal = {CoRR},
volume = {abs/2102.09548},
year = {2021},
url = {https://arxiv.org/abs/2102.09548},
eprinttype = {arXiv},
eprint = {2102.09548},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-09548.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-13186,
author = {Chirag Agarwal and
Himabindu Lakkaraju and
Marinka Zitnik},
title = {Towards a Unified Framework for Fair and Stable Graph Representation
Learning},
journal = {CoRR},
volume = {abs/2102.13186},
year = {2021},
url = {https://arxiv.org/abs/2102.13186},
eprinttype = {arXiv},
eprint = {2102.13186},
timestamp = {Tue, 02 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-13186.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-10334,
author = {Matthew B. A. McDermott and
Brendan Yap and
Peter Szolovits and
Marinka Zitnik},
title = {Rethinking Relational Encoding in Language Model: Pre-Training for
General Sequences},
journal = {CoRR},
volume = {abs/2103.10334},
year = {2021},
url = {https://arxiv.org/abs/2103.10334},
eprinttype = {arXiv},
eprint = {2103.10334},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-10334.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-04883,
author = {Michelle M. Li and
Kexin Huang and
Marinka Zitnik},
title = {Representation Learning for Networks in Biology and Medicine: Advancements,
Challenges, and Opportunities},
journal = {CoRR},
volume = {abs/2104.04883},
year = {2021},
url = {https://arxiv.org/abs/2104.04883},
eprinttype = {arXiv},
eprint = {2104.04883},
timestamp = {Mon, 19 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-04883.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-02246,
author = {Michelle M. Li and
Marinka Zitnik},
title = {Deep Contextual Learners for Protein Networks},
journal = {CoRR},
volume = {abs/2106.02246},
year = {2021},
url = {https://arxiv.org/abs/2106.02246},
eprinttype = {arXiv},
eprint = {2106.02246},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-02246.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-09078,
author = {Chirag Agarwal and
Marinka Zitnik and
Himabindu Lakkaraju},
title = {Towards a Rigorous Theoretical Analysis and Evaluation of {GNN} Explanations},
journal = {CoRR},
volume = {abs/2106.09078},
year = {2021},
url = {https://arxiv.org/abs/2106.09078},
eprinttype = {arXiv},
eprint = {2106.09078},
timestamp = {Tue, 29 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-09078.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-05357,
author = {Xiang Zhang and
Marko Zeman and
Theodoros Tsiligkaridis and
Marinka Zitnik},
title = {Graph-Guided Network for Irregularly Sampled Multivariate Time Series},
journal = {CoRR},
volume = {abs/2110.05357},
year = {2021},
url = {https://arxiv.org/abs/2110.05357},
eprinttype = {arXiv},
eprint = {2110.05357},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-05357.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-12554,
author = {Ryan T. Scott and
Erik L. Antonsen and
Lauren M. Sanders and
Jaden J. A. Hastings and
Seung{-}Min Park and
Graham Mackintosh and
Robert J. Reynolds and
Adrienne L. Hoarfrost and
Aenor Sawyer and
Casey S. Greene and
Benjamin S. Glicksberg and
Corey A. Theriot and
Daniel C. Berrios and
Jack Miller and
Joel Babdor and
Richard Barker and
Sergio E. Baranzini and
Afshin Beheshti and
Stuart J. Chalk and
Guillermo M. Delgado{-}Aparicio and
Melissa A. Haendel and
Arif A. Hamid and
Philip Heller and
Daniel Jamieson and
Katelyn J. Jarvis and
John Kalantari and
Kia Khezeli and
Svetlana V. Komarova and
Matthieu Komorowski and
Prachi Kothiyal and
Ashish Mahabal and
Uri Manor and
H{\'{e}}ctor Garc{\'{\i}}a Mart{\'{\i}}n and
Christopher E. Mason and
Mona Matar and
George I. Mias and
Jerry G. Myers Jr. and
Charlotte A. Nelson and
Jonathan Oribello and
Patricia Parsons{-}Wingerter and
R. K. Prabhu and
Amina Ann Qutub and
Jon Rask and
Amanda Saravia{-}Butler and
Suchi Saria and
Nitin Kumar Singh and
Frank Soboczenski and
Michael Snyder and
Karthik Soman and
David Van Valen and
Kasthuri Venkateswaran and
Liz Warren and
Liz Worthey and
Jason H. Yang and
Marinka Zitnik and
Sylvain V. Costes},
title = {Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and
Precision Space Health},
journal = {CoRR},
volume = {abs/2112.12554},
year = {2021},
url = {https://arxiv.org/abs/2112.12554},
eprinttype = {arXiv},
eprint = {2112.12554},
timestamp = {Tue, 14 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-12554.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-12582,
author = {Lauren M. Sanders and
Jason H. Yang and
Ryan T. Scott and
Amina Ann Qutub and
H{\'{e}}ctor Garc{\'{\i}}a Mart{\'{\i}}n and
Daniel C. Berrios and
Jaden J. A. Hastings and
Jon Rask and
Graham Mackintosh and
Adrienne L. Hoarfrost and
Stuart J. Chalk and
John Kalantari and
Kia Khezeli and
Erik L. Antonsen and
Joel Babdor and
Richard Barker and
Sergio E. Baranzini and
Afshin Beheshti and
Guillermo M. Delgado{-}Aparicio and
Benjamin S. Glicksberg and
Casey S. Greene and
Melissa A. Haendel and
Arif A. Hamid and
Philip Heller and
Daniel Jamieson and
Katelyn J. Jarvis and
Svetlana V. Komarova and
Matthieu Komorowski and
Prachi Kothiyal and
Ashish Mahabal and
Uri Manor and
Christopher E. Mason and
Mona Matar and
George I. Mias and
Jack Miller and
Jerry G. Myers Jr. and
Charlotte A. Nelson and
Jonathan Oribello and
Seung{-}Min Park and
Patricia Parsons{-}Wingerter and
R. K. Prabhu and
Robert J. Reynolds and
Amanda Saravia{-}Butler and
Suchi Saria and
Aenor Sawyer and
Nitin Kumar Singh and
Frank Soboczenski and
Michael Snyder and
Karthik Soman and
Corey A. Theriot and
David Van Valen and
Kasthuri Venkateswaran and
Liz Warren and
Liz Worthey and
Marinka Zitnik and
Sylvain V. Costes},
title = {Beyond Low Earth Orbit: Biological Research, Artificial Intelligence,
and Self-Driving Labs},
journal = {CoRR},
volume = {abs/2112.12582},
year = {2021},
url = {https://arxiv.org/abs/2112.12582},
eprinttype = {arXiv},
eprint = {2112.12582},
timestamp = {Tue, 14 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-12582.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/widm/StiglicKFZVC20,
author = {Gregor Stiglic and
Primoz Kocbek and
Nino Fijacko and
Marinka Zitnik and
Katrien Verbert and
Leona Cilar},
title = {Interpretability of machine learning-based prediction models in healthcare},
journal = {WIREs Data Mining Knowl. Discov.},
volume = {10},
number = {5},
year = {2020},
url = {https://doi.org/10.1002/widm.1379},
doi = {10.1002/WIDM.1379},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/widm/StiglicKFZVC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/HuLGZLPL20,
author = {Weihua Hu and
Bowen Liu and
Joseph Gomes and
Marinka Zitnik and
Percy Liang and
Vijay S. Pande and
Jure Leskovec},
title = {Strategies for Pre-training Graph Neural Networks},
booktitle = {8th International Conference on Learning Representations, {ICLR} 2020,
Addis Ababa, Ethiopia, April 26-30, 2020},
publisher = {OpenReview.net},
year = {2020},
url = {https://openreview.net/forum?id=HJlWWJSFDH},
timestamp = {Thu, 07 May 2020 17:11:47 +0200},
biburl = {https://dblp.org/rec/conf/iclr/HuLGZLPL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/AlsentzerFLZ20,
author = {Emily Alsentzer and
Samuel G. Finlayson and
Michelle M. Li and
Marinka Zitnik},
editor = {Hugo Larochelle and
Marc'Aurelio Ranzato and
Raia Hadsell and
Maria{-}Florina Balcan and
Hsuan{-}Tien Lin},
title = {Subgraph Neural Networks},
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
on Neural Information Processing Systems 2020, NeurIPS 2020, December
6-12, 2020, virtual},
year = {2020},
url = {https://proceedings.neurips.cc/paper/2020/hash/5bca8566db79f3788be9efd96c9ed70d-Abstract.html},
timestamp = {Tue, 19 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/AlsentzerFLZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HuFZDRLCL20,
author = {Weihua Hu and
Matthias Fey and
Marinka Zitnik and
Yuxiao Dong and
Hongyu Ren and
Bowen Liu and
Michele Catasta and
Jure Leskovec},
editor = {Hugo Larochelle and
Marc'Aurelio Ranzato and
Raia Hadsell and
Maria{-}Florina Balcan and
Hsuan{-}Tien Lin},
title = {Open Graph Benchmark: Datasets for Machine Learning on Graphs},
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
on Neural Information Processing Systems 2020, NeurIPS 2020, December
6-12, 2020, virtual},
year = {2020},
url = {https://proceedings.neurips.cc/paper/2020/hash/fb60d411a5c5b72b2e7d3527cfc84fd0-Abstract.html},
timestamp = {Tue, 19 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/HuFZDRLCL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HuangZ20,
author = {Kexin Huang and
Marinka Zitnik},
editor = {Hugo Larochelle and
Marc'Aurelio Ranzato and
Raia Hadsell and
Maria{-}Florina Balcan and
Hsuan{-}Tien Lin},
title = {Graph Meta Learning via Local Subgraphs},
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
on Neural Information Processing Systems 2020, NeurIPS 2020, December
6-12, 2020, virtual},
year = {2020},
url = {https://proceedings.neurips.cc/paper/2020/hash/412604be30f701b1b1e3124c252065e6-Abstract.html},
timestamp = {Tue, 19 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/HuangZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ZhangZ20,
author = {Xiang Zhang and
Marinka Zitnik},
editor = {Hugo Larochelle and
Marc'Aurelio Ranzato and
Raia Hadsell and
Maria{-}Florina Balcan and
Hsuan{-}Tien Lin},
title = {GNNGuard: Defending Graph Neural Networks against Adversarial Attacks},
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
on Neural Information Processing Systems 2020, NeurIPS 2020, December
6-12, 2020, virtual},
year = {2020},
url = {https://proceedings.neurips.cc/paper/2020/hash/690d83983a63aa1818423fd6edd3bfdb-Abstract.html},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/ZhangZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-08596,
author = {Gregor Stiglic and
Primoz Kocbek and
Nino Fijacko and
Marinka Zitnik and
Katrien Verbert and
Leona Cilar},
title = {Interpretability of machine learning based prediction models in healthcare},
journal = {CoRR},
volume = {abs/2002.08596},
year = {2020},
url = {https://arxiv.org/abs/2002.08596},
eprinttype = {arXiv},
eprint = {2002.08596},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-08596.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-07229,
author = {Deisy Morselli Gysi and
{\'{I}}talo Do Valle and
Marinka Zitnik and
Asher Ameli and
Xiao Gan and
Onur Varol and
Helia Sanchez and
Rebecca Marlene Baron and
Dina Ghiassian and
Joseph Loscalzo and
Albert{-}L{\'{a}}szl{\'{o}} Barab{\'{a}}si},
title = {Network Medicine Framework for Identifying Drug Repurposing Opportunities
for {COVID-19}},
journal = {CoRR},
volume = {abs/2004.07229},
year = {2020},
url = {https://arxiv.org/abs/2004.07229},
eprinttype = {arXiv},
eprint = {2004.07229},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-07229.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-14949,
author = {Kexin Huang and
Cao Xiao and
Lucas Glass and
Marinka Zitnik and
Jimeng Sun},
title = {SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks},
journal = {CoRR},
volume = {abs/2004.14949},
year = {2020},
url = {https://arxiv.org/abs/2004.14949},
eprinttype = {arXiv},
eprint = {2004.14949},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-14949.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-00687,
author = {Weihua Hu and
Matthias Fey and
Marinka Zitnik and
Yuxiao Dong and
Hongyu Ren and
Bowen Liu and
Michele Catasta and
Jure Leskovec},
title = {Open Graph Benchmark: Datasets for Machine Learning on Graphs},
journal = {CoRR},
volume = {abs/2005.00687},
year = {2020},
url = {https://arxiv.org/abs/2005.00687},
eprinttype = {arXiv},
eprint = {2005.00687},
timestamp = {Fri, 08 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-00687.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-07889,
author = {Kexin Huang and
Marinka Zitnik},
title = {Graph Meta Learning via Local Subgraphs},
journal = {CoRR},
volume = {abs/2006.07889},
year = {2020},
url = {https://arxiv.org/abs/2006.07889},
eprinttype = {arXiv},
eprint = {2006.07889},
timestamp = {Wed, 17 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-07889.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-08149,
author = {Xiang Zhang and
Marinka Zitnik},
title = {GNNGuard: Defending Graph Neural Networks against Adversarial Attacks},
journal = {CoRR},
volume = {abs/2006.08149},
year = {2020},
url = {https://arxiv.org/abs/2006.08149},
eprinttype = {arXiv},
eprint = {2006.08149},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-08149.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-10538,
author = {Emily Alsentzer and
Samuel G. Finlayson and
Michelle M. Li and
Marinka Zitnik},
title = {Subgraph Neural Networks},
journal = {CoRR},
volume = {abs/2006.10538},
year = {2020},
url = {https://arxiv.org/abs/2006.10538},
eprinttype = {arXiv},
eprint = {2006.10538},
timestamp = {Tue, 23 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-10538.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-03951,
author = {Kexin Huang and
Tianfan Fu and
Dawood Khan and
Ali Abid and
Ali Abdalla and
Abubakar Abid and
Lucas M. Glass and
Marinka Zitnik and
Cao Xiao and
Jimeng Sun},
title = {MolDesigner: Interactive Design of Efficacious Drugs with Deep Learning},
journal = {CoRR},
volume = {abs/2010.03951},
year = {2020},
url = {https://arxiv.org/abs/2010.03951},
eprinttype = {arXiv},
eprint = {2010.03951},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-03951.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZRZZSLH19,
author = {Xuan Wang and
Yu Zhang and
Xiang Ren and
Yuhao Zhang and
Marinka Zitnik and
Jingbo Shang and
Curtis P. Langlotz and
Jiawei Han},
title = {Cross-type biomedical named entity recognition with deep multi-task
learning},
journal = {Bioinform.},
volume = {35},
number = {10},
pages = {1745--1752},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty869},
doi = {10.1093/BIOINFORMATICS/BTY869},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZRZZSLH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/inffus/ZitnikNWLGH19,
author = {Marinka Zitnik and
Francis Nguyen and
Bo Wang and
Jure Leskovec and
Anna Goldenberg and
Michael M. Hoffman},
title = {Machine learning for integrating data in biology and medicine: Principles,
practice, and opportunities},
journal = {Inf. Fusion},
volume = {50},
pages = {71--91},
year = {2019},
url = {https://doi.org/10.1016/j.inffus.2018.09.012},
doi = {10.1016/J.INFFUS.2018.09.012},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/inffus/ZitnikNWLGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/YingBYZL19,
author = {Zhitao Ying and
Dylan Bourgeois and
Jiaxuan You and
Marinka Zitnik and
Jure Leskovec},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {GNNExplainer: Generating Explanations for Graph Neural Networks},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {9240--9251},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/d80b7040b773199015de6d3b4293c8ff-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/YingBYZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-03894,
author = {Rex Ying and
Dylan Bourgeois and
Jiaxuan You and
Marinka Zitnik and
Jure Leskovec},
title = {{GNN} Explainer: {A} Tool for Post-hoc Explanation of Graph Neural
Networks},
journal = {CoRR},
volume = {abs/1903.03894},
year = {2019},
url = {http://arxiv.org/abs/1903.03894},
eprinttype = {arXiv},
eprint = {1903.03894},
timestamp = {Sun, 31 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-03894.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-12265,
author = {Weihua Hu and
Bowen Liu and
Joseph Gomes and
Marinka Zitnik and
Percy Liang and
Vijay S. Pande and
Jure Leskovec},
title = {Pre-training Graph Neural Networks},
journal = {CoRR},
volume = {abs/1905.12265},
year = {2019},
url = {http://arxiv.org/abs/1905.12265},
eprinttype = {arXiv},
eprint = {1905.12265},
timestamp = {Mon, 03 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-12265.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikAL18,
author = {Marinka Zitnik and
Monica Agrawal and
Jure Leskovec},
title = {Modeling polypharmacy side effects with graph convolutional networks},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i457--i466},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty294},
doi = {10.1093/BIOINFORMATICS/BTY294},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikAL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/DonnatZHL18,
author = {Claire Donnat and
Marinka Zitnik and
David Hallac and
Jure Leskovec},
editor = {Yike Guo and
Faisal Farooq},
title = {Learning Structural Node Embeddings via Diffusion Wavelets},
booktitle = {Proceedings of the 24th {ACM} {SIGKDD} International Conference on
Knowledge Discovery {\&} Data Mining, {KDD} 2018, London, UK,
August 19-23, 2018},
pages = {1320--1329},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3219819.3220025},
doi = {10.1145/3219819.3220025},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/DonnatZHL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HamiltonBZJL18,
author = {William L. Hamilton and
Payal Bajaj and
Marinka Zitnik and
Dan Jurafsky and
Jure Leskovec},
editor = {Samy Bengio and
Hanna M. Wallach and
Hugo Larochelle and
Kristen Grauman and
Nicol{\`{o}} Cesa{-}Bianchi and
Roman Garnett},
title = {Embedding Logical Queries on Knowledge Graphs},
booktitle = {Advances in Neural Information Processing Systems 31: Annual Conference
on Neural Information Processing Systems 2018, NeurIPS 2018, December
3-8, 2018, Montr{\'{e}}al, Canada},
pages = {2030--2041},
year = {2018},
url = {https://proceedings.neurips.cc/paper/2018/hash/ef50c335cca9f340bde656363ebd02fd-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/HamiltonBZJL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AgrawalZL18,
author = {Monica Agrawal and
Marinka Zitnik and
Jure Leskovec},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Large-scale analysis of disease pathways in the human interactome},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {111--122},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/agrawal.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AgrawalZL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-09851,
author = {Xuan Wang and
Yu Zhang and
Xiang Ren and
Yuhao Zhang and
Marinka Zitnik and
Jingbo Shang and
Curtis P. Langlotz and
Jiawei Han},
title = {Cross-type Biomedical Named Entity Recognition with Deep Multi-Task
Learning},
journal = {CoRR},
volume = {abs/1801.09851},
year = {2018},
url = {http://arxiv.org/abs/1801.09851},
eprinttype = {arXiv},
eprint = {1801.09851},
timestamp = {Fri, 26 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-09851.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-00543,
author = {Marinka Zitnik and
Monica Agrawal and
Jure Leskovec},
title = {Modeling polypharmacy side effects with graph convolutional networks},
journal = {CoRR},
volume = {abs/1802.00543},
year = {2018},
url = {http://arxiv.org/abs/1802.00543},
eprinttype = {arXiv},
eprint = {1802.00543},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1802-00543.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1805-02411,
author = {Marinka Zitnik and
Rok Sosic and
Jure Leskovec},
title = {Prioritizing network communities},
journal = {CoRR},
volume = {abs/1805.02411},
year = {2018},
url = {http://arxiv.org/abs/1805.02411},
eprinttype = {arXiv},
eprint = {1805.02411},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1805-02411.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1805-03327,
author = {Bo Wang and
Armin Pourshafeie and
Marinka Zitnik and
Junjie Zhu and
Carlos D. Bustamante and
Serafim Batzoglou and
Jure Leskovec},
title = {Network Enhancement: a general method to denoise weighted biological
networks},
journal = {CoRR},
volume = {abs/1805.03327},
year = {2018},
url = {http://arxiv.org/abs/1805.03327},
eprinttype = {arXiv},
eprint = {1805.03327},
timestamp = {Fri, 10 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1805-03327.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-01445,
author = {William L. Hamilton and
Payal Bajaj and
Marinka Zitnik and
Dan Jurafsky and
Jure Leskovec},
title = {Querying Complex Networks in Vector Space},
journal = {CoRR},
volume = {abs/1806.01445},
year = {2018},
url = {http://arxiv.org/abs/1806.01445},
eprinttype = {arXiv},
eprint = {1806.01445},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-01445.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1807-00123,
author = {Marinka Zitnik and
Francis Nguyen and
Bo Wang and
Jure Leskovec and
Anna Goldenberg and
Michael M. Hoffman},
title = {Machine Learning for Integrating Data in Biology and Medicine: Principles,
Practice, and Opportunities},
journal = {CoRR},
volume = {abs/1807.00123},
year = {2018},
url = {http://arxiv.org/abs/1807.00123},
eprinttype = {arXiv},
eprint = {1807.00123},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1807-00123.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-01743,
author = {Marinka Zitnik and
Blaz Zupan},
title = {{NIMFA:} {A} Python Library for Nonnegative Matrix Factorization},
journal = {CoRR},
volume = {abs/1808.01743},
year = {2018},
url = {http://arxiv.org/abs/1808.01743},
eprinttype = {arXiv},
eprint = {1808.01743},
timestamp = {Sun, 02 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1808-01743.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CoparZZ17,
author = {Andrej Copar and
Marinka Zitnik and
Blaz Zupan},
title = {Scalable non-negative matrix tri-factorization},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {41:1--41:16},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0160-6},
doi = {10.1186/S13040-017-0160-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CoparZZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikL17,
author = {Marinka Zitnik and
Jure Leskovec},
title = {Predicting multicellular function through multi-layer tissue networks},
journal = {Bioinform.},
volume = {33},
number = {14},
pages = {i190--i198},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx252},
doi = {10.1093/BIOINFORMATICS/BTX252},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/pkdd/2017-3,
editor = {Yasemin Altun and
Kamalika Das and
Taneli Mielik{\"{a}}inen and
Donato Malerba and
Jerzy Stefanowski and
Jesse Read and
Marinka Zitnik and
Michelangelo Ceci and
Saso Dzeroski},
title = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2017, Skopje, Macedonia, September 18-22, 2017, Proceedings,
Part {III}},
series = {Lecture Notes in Computer Science},
volume = {10536},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-71273-4},
doi = {10.1007/978-3-319-71273-4},
isbn = {978-3-319-71272-7},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pkdd/2017-3.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ZitnikL17,
author = {Marinka Zitnik and
Jure Leskovec},
title = {Predicting multicellular function through multi-layer tissue networks},
journal = {CoRR},
volume = {abs/1707.04638},
year = {2017},
url = {http://arxiv.org/abs/1707.04638},
eprinttype = {arXiv},
eprint = {1707.04638},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ZitnikL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-03392,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Jumping across biomedical contexts using compressive data fusion},
journal = {CoRR},
volume = {abs/1708.03392},
year = {2017},
url = {http://arxiv.org/abs/1708.03392},
eprinttype = {arXiv},
eprint = {1708.03392},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1708-03392.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1710-10321,
author = {Claire Donnat and
Marinka Zitnik and
David Hallac and
Jure Leskovec},
title = {Spectral Graph Wavelets for Structural Role Similarity in Networks},
journal = {CoRR},
volume = {abs/1710.10321},
year = {2017},
url = {http://arxiv.org/abs/1710.10321},
eprinttype = {arXiv},
eprint = {1710.10321},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1710-10321.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-00843,
author = {Monica Agrawal and
Marinka Zitnik and
Jure Leskovec},
title = {Large-scale analysis of disease pathways in the human interactome},
journal = {CoRR},
volume = {abs/1712.00843},
year = {2017},
url = {http://arxiv.org/abs/1712.00843},
eprinttype = {arXiv},
eprint = {1712.00843},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-00843.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StrazarZZUC16,
author = {Martin Strazar and
Marinka Zitnik and
Blaz Zupan and
Jernej Ule and
Tomaz Curk},
title = {Orthogonal matrix factorization enables integrative analysis of multiple
{RNA} binding proteins},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1527--1535},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw003},
doi = {10.1093/BIOINFORMATICS/BTW003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StrazarZZUC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikZ16,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Jumping across biomedical contexts using compressive data fusion},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {90--100},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw247},
doi = {10.1093/BIOINFORMATICS/BTW247},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik16,
author = {Marinka Zitnik},
title = {The Brownian wanderlust of things},
journal = {{XRDS}},
volume = {22},
number = {3},
pages = {81--89},
year = {2016},
url = {https://doi.org/10.1145/2893527},
doi = {10.1145/2893527},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik16a,
author = {Marinka Zitnik},
title = {The infinite mixtures of food products},
journal = {{XRDS}},
volume = {23},
number = {1},
pages = {66--67},
year = {2016},
url = {https://doi.org/10.1145/2983445},
doi = {10.1145/2983445},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ZitnikZ16,
author = {Marinka Zitnik and
Blaz Zupan},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Collective Pairwise Classification for Multi-Way Analysis of Disease
and Drug Data},
booktitle = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
pages = {81--92},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/zitnik.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ZitnikZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikZ15,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Gene network inference by fusing data from diverse distributions},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {230--239},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv258},
doi = {10.1093/BIOINFORMATICS/BTV258},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZitnikZZB15,
author = {Slavko Zitnik and
Marinka Zitnik and
Blaz Zupan and
Marko Bajec},
title = {Sieve-based relation extraction of gene regulatory networks from biological
literature},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S16}},
pages = {S1},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s16-s1},
doi = {10.1186/1471-2105-16-S16-S1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZitnikZZB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik15,
author = {Marinka Zitnik},
title = {Hidden genes: understanding cancer data with matrix factorization},
journal = {{XRDS}},
volume = {21},
number = {4},
pages = {72--74},
year = {2015},
url = {https://doi.org/10.1145/2788526},
doi = {10.1145/2788526},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/ZupanZ15,
author = {Lara Zupan and
Marinka Zitnik},
title = {Sorry kids, Iron Man's superpowers aren't unique},
journal = {{XRDS}},
volume = {22},
number = {1},
pages = {66--67},
year = {2015},
url = {https://doi.org/10.1145/2810249},
doi = {10.1145/2810249},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/ZupanZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/ZupanZ15a,
author = {Lara Zupan and
Marinka Zitnik},
title = {According to sensor 22, Benny is preparing dinner},
journal = {{XRDS}},
volume = {22},
number = {2},
pages = {72--74},
year = {2015},
url = {https://doi.org/10.1145/2845139},
doi = {10.1145/2845139},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/crossroads/ZupanZ15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZitnikZ15,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion},
journal = {J. Comput. Biol.},
volume = {22},
number = {6},
pages = {595--608},
year = {2015},
url = {https://doi.org/10.1089/cmb.2014.0158},
doi = {10.1089/CMB.2014.0158},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZitnikZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pami/ZitnikZ15,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Data Fusion by Matrix Factorization},
journal = {{IEEE} Trans. Pattern Anal. Mach. Intell.},
volume = {37},
number = {1},
pages = {41--53},
year = {2015},
url = {https://doi.org/10.1109/TPAMI.2014.2343973},
doi = {10.1109/TPAMI.2014.2343973},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pami/ZitnikZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ZitnikNDKSZ15,
author = {Marinka Zitnik and
Edward A. Nam and
Christopher Dinh and
Adam Kuspa and
Gad Shaulsky and
Blaz Zupan},
title = {Gene Prioritization by Compressive Data Fusion and Chaining},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {10},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004552},
doi = {10.1371/JOURNAL.PCBI.1004552},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ZitnikNDKSZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikZ14,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Gene network inference by probabilistic scoring of relationships from
a factorized model of interactions},
journal = {Bioinform.},
volume = {30},
number = {12},
pages = {246--254},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu287},
doi = {10.1093/BIOINFORMATICS/BTU287},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik14,
author = {Marinka Zitnik},
title = {Efficient sensor placement for environmental monitoring},
journal = {{XRDS}},
volume = {20},
number = {3},
pages = {73--75},
year = {2014},
url = {https://doi.org/10.1145/2591613},
doi = {10.1145/2591613},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik14a,
author = {Marinka Zitnik},
title = {Exploring data with topological tools},
journal = {{XRDS}},
volume = {20},
number = {4},
pages = {65--66},
year = {2014},
url = {https://doi.org/10.1145/2627814},
doi = {10.1145/2627814},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik14a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik14b,
author = {Marinka Zitnik},
title = {Dynamics of news from the \emph{New York Times}},
journal = {{XRDS}},
volume = {21},
number = {1},
pages = {64--66},
year = {2014},
url = {https://doi.org/10.1145/2667629},
doi = {10.1145/2667629},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik14b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik14c,
author = {Marinka Zitnik},
title = {The anatomy of a human disease network},
journal = {{XRDS}},
volume = {21},
number = {2},
pages = {58--60},
year = {2014},
url = {https://doi.org/10.1145/2684197},
doi = {10.1145/2684197},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik14c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ZitnikZ14,
author = {Marinka Zitnik and
Blaz Zupan},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Matrix Factorization-Based Data Fusion for Gene Function Prediction
in Baker's Yeast and Slime Mold},
booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
pages = {400--411},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/zitnik.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ZitnikZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZitnikZ14,
author = {Marinka Zitnik and
Blaz Zupan},
editor = {Roded Sharan},
title = {Imputation of Quantitative Genetic Interactions in Epistatic MAPs
by Interaction Propagation Matrix Completion},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {448--462},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_35},
doi = {10.1007/978-3-319-05269-4\_35},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZitnikZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik13,
author = {Marinka Zitnik},
title = {Matrix function: a "VIP" in linear algebra and its applications},
journal = {{XRDS}},
volume = {19},
number = {3},
pages = {66--67},
year = {2013},
url = {https://doi.org/10.1145/2425676.2425697},
doi = {10.1145/2425676.2425697},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik13a,
author = {Marinka Zitnik},
title = {Zero-knowledge Proofs},
journal = {{XRDS}},
volume = {20},
number = {1},
pages = {65--67},
year = {2013},
url = {https://doi.org/10.1145/2517258},
doi = {10.1145/2517258},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik13b,
author = {Marinka Zitnik},
title = {On constructing the tree of life},
journal = {{XRDS}},
volume = {20},
number = {2},
pages = {65--67},
year = {2013},
url = {https://doi.org/10.1145/2544056},
doi = {10.1145/2544056},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik13b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/DemsarCEGHMMPTSSUZZZZ13,
author = {Janez Demsar and
Tomaz Curk and
Ales Erjavec and
Crtomir Gorup and
Tomaz Hocevar and
Mitar Milutinovic and
Martin Mozina and
Matija Polajnar and
Marko Toplak and
Anze Staric and
Miha Stajdohar and
Lan Umek and
Lan Zagar and
Jure Zbontar and
Marinka Zitnik and
Blaz Zupan},
title = {Orange: data mining toolbox in python},
journal = {J. Mach. Learn. Res.},
volume = {14},
number = {1},
pages = {2349--2353},
year = {2013},
url = {https://dl.acm.org/doi/10.5555/2567709.2567736},
doi = {10.5555/2567709.2567736},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/DemsarCEGHMMPTSSUZZZZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ZitnikZZB13,
author = {Slavko Zitnik and
Marinka Zitnik and
Blaz Zupan and
Marko Bajec},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {Extracting Gene Regulation Networks Using Linear-Chain Conditional
Random Fields and Rules},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {178--187},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2026/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ZitnikZZB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ZitnikZ13,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Data Fusion by Matrix Factorization},
journal = {CoRR},
volume = {abs/1307.0803},
year = {2013},
url = {http://arxiv.org/abs/1307.0803},
eprinttype = {arXiv},
eprint = {1307.0803},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ZitnikZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik12,
author = {Marinka Zitnik},
title = {Using sentiment analysis to improve business operations},
journal = {{XRDS}},
volume = {18},
number = {4},
pages = {42--43},
year = {2012},
url = {https://doi.org/10.1145/2173637.2173655},
doi = {10.1145/2173637.2173655},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/crossroads/Zitnik12a,
author = {Marinka Zitnik},
title = {Iterative numerical methods for nonlinear systems},
journal = {{XRDS}},
volume = {19},
number = {2},
pages = {64--66},
year = {2012},
url = {https://doi.org/10.1145/2382856.2382879},
doi = {10.1145/2382856.2382879},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/crossroads/Zitnik12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/ZitnikZ12,
author = {Marinka Zitnik and
Blaz Zupan},
title = {{NIMFA:} {A} Python Library for Nonnegative Matrix Factorization},
journal = {J. Mach. Learn. Res.},
volume = {13},
pages = {849--853},
year = {2012},
url = {https://dl.acm.org/doi/10.5555/2503308.2188415},
doi = {10.5555/2503308.2188415},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/ZitnikZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/rsctc/ZbontarZZMPZ12,
author = {Jure Zbontar and
Marinka Zitnik and
Miha Zidar and
Gregor Majcen and
Matic Potocnik and
Blaz Zupan},
editor = {Jingtao Yao and
Yan Yang and
Roman Slowinski and
Salvatore Greco and
Huaxiong Li and
Sushmita Mitra and
Lech Polkowski},
title = {Team ULjubljana's Solution to the {JRS} 2012 Data Mining Competition},
booktitle = {Rough Sets and Current Trends in Computing - 8th International Conference,
{RSCTC} 2012, Chengdu, China, August 17-20, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7413},
pages = {471--478},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-32115-3\_56},
doi = {10.1007/978-3-642-32115-3\_56},
timestamp = {Tue, 20 Aug 2024 07:54:44 +0200},
biburl = {https://dblp.org/rec/conf/rsctc/ZbontarZZMPZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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