Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBibTeX records: Ruhong Zhou
@article{DBLP:journals/bmcbi/ZhangDYKZC21,
author = {Leili Zhang and
Giacomo Domeniconi and
Chih{-}Chieh Yang and
Seung{-}gu Kang and
Ruhong Zhou and
Guojing Cong},
title = {{CASTELO:} clustered atom subtypes aided lead optimization - a combined
machine learning and molecular modeling method},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {338},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04214-4},
doi = {10.1186/S12859-021-04214-4},
timestamp = {Tue, 06 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangDYKZC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2011-13788,
author = {Leili Zhang and
Giacomo Domeniconi and
Chih{-}Chieh Yang and
Seung{-}gu Kang and
Ruhong Zhou and
Guojing Cong},
title = {{CASTELO:} Clustered Atom Subtypes aidEd Lead Optimization - a combined
machine learning and molecular modeling method},
journal = {CoRR},
volume = {abs/2011.13788},
year = {2020},
url = {https://arxiv.org/abs/2011.13788},
eprinttype = {arXiv},
eprint = {2011.13788},
timestamp = {Tue, 01 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2011-13788.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FloresBSZH12,
author = {Samuel Flores and
Julie Bernauer and
Seokmin Shin and
Ruhong Zhou and
Xuhui Huang},
title = {Multiscale modeling of macromolecular biosystems},
journal = {Briefings Bioinform.},
volume = {13},
number = {4},
pages = {395--405},
year = {2012},
url = {https://doi.org/10.1093/bib/bbr077},
doi = {10.1093/BIB/BBR077},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/FloresBSZH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ibmrd/XiaDHRZ11,
author = {Zhen Xia and
Payel Das and
Tien Huynh and
Ajay K. Royyuru and
Ruhong Zhou},
title = {Modeling mutations of influenza virus with {IBM} Blue Gene},
journal = {{IBM} J. Res. Dev.},
volume = {55},
number = {5},
pages = {7},
year = {2011},
url = {https://doi.org/10.1147/JRD.2011.2163276},
doi = {10.1147/JRD.2011.2163276},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ibmrd/XiaDHRZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BernauerFHSZ11,
author = {Julie Bernauer and
Samuel Flores and
Xuhui Huang and
Seokmin Shin and
Ruhong Zhou},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session Introduction},
booktitle = {Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 3-7 January 2011},
pages = {177--180},
publisher = {World Scientific Publishing},
year = {2011},
url = {http://psb.stanford.edu/psb-online/proceedings/psb11/intro-multiscale.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BernauerFHSZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/FloresBHZS10,
author = {Samuel Flores and
Julie Bernauer and
Xuhui Huang and
Ruhong Zhou and
Seokmin Shin},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session Introduction},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {200--204},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-multires.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/FloresBHZS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaJZZ09,
author = {Zhen Xia and
Gulei Jin and
Jun Zhu and
Ruhong Zhou},
title = {Using a mutual information-based site transition network to map the
genetic evolution of influenza {A/H3N2} virus},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2309--2317},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp423},
doi = {10.1093/BIOINFORMATICS/BTP423},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaJZZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/DasLRZ09,
author = {Payel Das and
Jingyuan Li and
Ajay K. Royyuru and
Ruhong Zhou},
title = {Free energy simulations reveal a double mutant avian {H5N1} virus
hemagglutinin with altered receptor binding specificity},
journal = {J. Comput. Chem.},
volume = {30},
number = {11},
pages = {1654--1663},
year = {2009},
url = {https://doi.org/10.1002/jcc.21274},
doi = {10.1002/JCC.21274},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/DasLRZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ibmrd/ZhouEHGRB08,
author = {Ruhong Zhou and
Maria Eleftheriou and
Chung{-}Chau Hon and
Robert S. Germain and
Ajay K. Royyuru and
Bruce J. Berne},
title = {Massively parallel molecular dynamics simulations of lysozyme unfolding},
journal = {{IBM} J. Res. Dev.},
volume = {52},
number = {1-2},
pages = {19--30},
year = {2008},
url = {https://doi.org/10.1147/rd.521.0019},
doi = {10.1147/RD.521.0019},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ibmrd/ZhouEHGRB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouPKM07,
author = {Ruhong Zhou and
Laxmi Parida and
Kush Kapila and
Sudhir P. Mudur},
title = {{PROTERAN:} animated terrain evolution for visual analysis of patterns
in protein folding trajectory},
journal = {Bioinform.},
volume = {23},
number = {1},
pages = {99--106},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl538},
doi = {10.1093/BIOINFORMATICS/BTL538},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouPKM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/ZhouRASS06,
author = {Ruhong Zhou and
Ajay K. Royyuru and
Prasanna Athma and
Frank Suits and
B. David Silverman},
title = {Magnitude and spatial orientation of the hydrophobic moments of multi-domain
proteins},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {2},
number = {2},
pages = {161--176},
year = {2006},
url = {https://doi.org/10.1504/IJBRA.2006.009766},
doi = {10.1504/IJBRA.2006.009766},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/ZhouRASS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/FitchREWGZPSGPSZFG06,
author = {Blake G. Fitch and
Aleksandr Rayshubskiy and
Maria Eleftheriou and
T. J. Christopher Ward and
Mark Giampapa and
Yuriy Zhestkov and
Michael Pitman and
Frank Suits and
Alan Grossfield and
Jed W. Pitera and
William C. Swope and
Ruhong Zhou and
Scott Feller and
Robert S. Germain},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3992},
pages = {846--854},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758525\_113},
doi = {10.1007/11758525\_113},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/FitchREWGZPSGPSZFG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/EleftheriouRPFZG06,
author = {Maria Eleftheriou and
Aleksandr Rayshubskiy and
Jed W. Pitera and
Blake G. Fitch and
Ruhong Zhou and
Robert S. Germain},
title = {Parallel implementation of the replica exchange molecular dynamics
algorithm on Blue Gene/L},
booktitle = {20th International Parallel and Distributed Processing Symposium {(IPDPS}
2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IPDPS.2006.1639538},
doi = {10.1109/IPDPS.2006.1639538},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/EleftheriouRPFZG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/YeCLWLZ05,
author = {Lei Ye and
Huajun Chen and
Ting Liu and
Zhaohui Wu and
Jingyuan Li and
Ruhong Zhou},
title = {A Wavelet Approach for the Analysis of Folding Trajectory of Protein
Trp-cage},
journal = {J. Bioinform. Comput. Biol.},
volume = {3},
number = {6},
pages = {1351--1370},
year = {2005},
url = {https://doi.org/10.1142/S0219720005001594},
doi = {10.1142/S0219720005001594},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/YeCLWLZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ParidaZ05,
author = {Laxmi Parida and
Ruhong Zhou},
title = {Combinatorial Pattern Discovery Approach for the Folding Trajectory
Analysis of a \emph{{\(\beta\)}}-Hairpin},
journal = {PLoS Comput. Biol.},
volume = {1},
number = {1},
year = {2005},
url = {https://doi.org/10.1371/journal.pcbi.0010008},
doi = {10.1371/JOURNAL.PCBI.0010008},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ParidaZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/FengPZ05,
author = {J. Feng and
Laxmi Parida and
Ruhong Zhou},
editor = {Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {Protein folding trajectory analysis using patterned clusters},
booktitle = {Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January
2005, Singapore},
pages = {95--104},
publisher = {Imperial College Press, London},
year = {2005},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2005/camera-ready/111.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/FengPZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/KaminskiFZ03,
author = {George A. Kaminski and
Richard A. Friesner and
Ruhong Zhou},
title = {A computationally inexpensive modification of the point dipole electrostatic
polarization model for molecular simulations},
journal = {J. Comput. Chem.},
volume = {24},
number = {3},
pages = {267--276},
year = {2003},
url = {https://doi.org/10.1002/jcc.10170},
doi = {10.1002/JCC.10170},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcc/KaminskiFZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/FitchGMPPRSSSWZZ03,
author = {Blake G. Fitch and
Robert S. Germain and
Mark P. Mendell and
Jed W. Pitera and
Michael Pitman and
Aleksandr Rayshubskiy and
Yuk Yin Sham and
Frank Suits and
William C. Swope and
T. J. Christopher Ward and
Yuriy Zhestkov and
Ruhong Zhou},
title = {Blue Matter, an application framework for molecular simulation on
Blue Gene},
journal = {J. Parallel Distributed Comput.},
volume = {63},
number = {7-8},
pages = {759--773},
year = {2003},
url = {https://doi.org/10.1016/S0743-7315(03)00084-4},
doi = {10.1016/S0743-7315(03)00084-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jpdc/FitchGMPPRSSSWZZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/KaminskiSBFCMZH02,
author = {George A. Kaminski and
Harry A. Stern and
Bruce J. Berne and
Richard A. Friesner and
Yixiang X. Cao and
Robert B. Murphy and
Ruhong Zhou and
Thomas A. Halgren},
title = {Development of a polarizable force field for proteins via ab initio
quantum chemistry: First generation model and gas phase tests},
journal = {J. Comput. Chem.},
volume = {23},
number = {16},
pages = {1515--1531},
year = {2002},
url = {https://doi.org/10.1002/jcc.10125},
doi = {10.1002/JCC.10125},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcc/KaminskiSBFCMZH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ZhouS02,
author = {Ruhong Zhou and
B. David Silverman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic
Moment Profiling},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {673--684},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/zhou.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ZhouS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ibmsj/AllenAA01,
author = {Frances E. Allen and
George S. Alm{\'{a}}si and
Wanda Andreoni and
Daniel K. Beece and
Bruce J. Berne and
Arthur A. Bright and
Jos{\'{e}} R. Brunheroto and
Calin Cascaval and
Jos{\'{e}} G. Casta{\~{n}}os and
Paul Coteus and
Paul Crumley and
Alessandro Curioni and
Monty Denneau and
Wilm E. Donath and
Maria Eleftheriou and
Blake G. Fitch and
Bruce M. Fleischer and
Christos J. Georgiou and
Robert S. Germain and
Mark Giampapa and
Donna L. Gresh and
Manish Gupta and
Ruud A. Haring and
C. T. Howard Ho and
Peter H. Hochschild and
Susan Flynn Hummel and
Tiziana Jonas and
Derek Lieber and
Glenn J. Martyna and
Kiran K. Maturu and
Jos{\'{e}} E. Moreira and
Dennis M. Newns and
Matthew Newton and
Robert Philhower and
Thomas Picunko and
Jed W. Pitera and
Michael Pitman and
Rick A. Rand and
Ajay K. Royyuru and
Valentina Salapura and
Alda Sanomiya and
Rahul S. Shah and
Yuk Yin Sham and
Sarabjeet Singh and
Marc Snir and
Frank Suits and
Richard A. Swetz and
William C. Swope and
Nagesh K. Vishnumurthy and
T. J. Christopher Ward and
Henry S. Warren Jr. and
Ruhong Zhou},
title = {Blue Gene: {A} vision for protein science using a petaflop supercomputer},
journal = {{IBM} Syst. J.},
volume = {40},
number = {2},
pages = {310--327},
year = {2001},
url = {https://doi.org/10.1147/sj.402.0310},
doi = {10.1147/SJ.402.0310},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ibmsj/AllenAA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2023-10-02 01:12 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
