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ORCIDBibTeX records: William S. York
@article{DBLP:journals/bioinformatics/KahsayVNMFHPRMW20,
author = {Robel Y. Kahsay and
Jeet Vora and
Rahi Navelkar and
Reza Mousavi and
Brian C. Fochtman and
Xavier Holmes and
Nagarajan Pattabiraman and
Ren{\'{e}} Ranzinger and
Rupali Mahadik and
Tatiana Williamson and
Sujeet Kulkarni and
Gaurav Agarwal and
Maria Jesus Martin and
Preethi Vasudev and
Leyla J. Garc{\'{\i}}a and
Nathan Edwards and
Wenjin Zhang and
Darren A. Natale and
Karen Ross and
Kiyoko F. Aoki{-}Kinoshita and
Matthew P. Campbell and
William S. York and
Raja Mazumder},
title = {GlyGen data model and processing workflow},
journal = {Bioinform.},
volume = {36},
number = {12},
pages = {3941--3943},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa238},
doi = {10.1093/BIOINFORMATICS/BTAA238},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KahsayVNMFHPRMW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-01004,
author = {Faramarz Valafar and
Homayoun Valafar and
William S. York},
title = {Identification of 1H-NMR Spectra of Xyloglucan Oligosaccharides: {A}
Comparative Study of Artificial Neural Networks and Bayesian Classification
Using Nonparametric Density Estimation},
journal = {CoRR},
volume = {abs/2008.01004},
year = {2020},
url = {https://arxiv.org/abs/2008.01004},
eprinttype = {arXiv},
eprint = {2008.01004},
timestamp = {Fri, 07 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-01004.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/AlJaddaKOGMRKPY18,
author = {Khalifeh AlJadda and
Mohammed Korayem and
Camilo Ortiz and
Trey Grainger and
John A. Miller and
Khaled Rasheed and
Krys J. Kochut and
Hao Peng and
William S. York and
Ren{\'{e}} Ranzinger and
Melody P. Porterfield},
title = {Mining massive hierarchical data using a scalable probabilistic graphical
model},
journal = {Inf. Sci.},
volume = {425},
pages = {62--75},
year = {2018},
url = {https://doi.org/10.1016/j.ins.2017.10.014},
doi = {10.1016/J.INS.2017.10.014},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/AlJaddaKOGMRKPY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Aoki-KinoshitaA16,
author = {Kiyoko F. Aoki{-}Kinoshita and
Sanjay Agravat and
Nobuyuki P. Aoki and
Sena Arpinar and
Richard D. Cummings and
Akihiro Fujita and
Noriaki Fujita and
Gerald M. Hart and
Stuart M. Haslam and
Toshisuke Kawasaki and
Masaaki Matsubara and
Kelley W. Moreman and
Shujiro Okuda and
Michael Pierce and
Ren{\'{e}} Ranzinger and
Toshihide Shikanai and
Daisuke Shinmachi and
Elena Solovieva and
Yoshinori Suzuki and
Shinichiro Tsuchiya and
Issaku Yamada and
William S. York and
Joseph Zaia and
Hisashi Narimatsu},
title = {GlyTouCan 1.0 - The international glycan structure repository},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1237--1242},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1041},
doi = {10.1093/NAR/GKV1041},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Aoki-KinoshitaA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlJaddaPBHTWMYR15,
author = {Khalifeh AlJadda and
Melody P. Porterfield and
Robert Bridger and
Christian Heiss and
Michael Tiemeyer and
Lance Wells and
John A. Miller and
William S. York and
Ren{\'{e}} Ranzinger},
title = {EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard
data},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {242--245},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu609},
doi = {10.1093/BIOINFORMATICS/BTU609},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlJaddaPBHTWMYR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AlJaddaRPWKMRKY15,
author = {Khalifeh AlJadda and
Ren{\'{e}} Ranzinger and
Melody P. Porterfield and
Brent Weatherly and
Mohammed Korayem and
John A. Miller and
Khaled Rasheed and
Krys J. Kochut and
William S. York},
title = {{GELATO} and {SAGE:} An Integrated Framework for {MS} Annotation},
journal = {CoRR},
volume = {abs/1512.08451},
year = {2015},
url = {http://arxiv.org/abs/1512.08451},
eprinttype = {arXiv},
eprint = {1512.08451},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AlJaddaRPWKMRKY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AlJaddaKOGMRKYR15,
author = {Khalifeh AlJadda and
Mohammed Korayem and
Camilo Ortiz and
Trey Grainger and
John A. Miller and
Khaled Rasheed and
Krys J. Kochut and
William S. York and
Ren{\'{e}} Ranzinger and
Melody P. Porterfield},
title = {Mining Massive Hierarchical Data Using a Scalable Probabilistic Graphical
Model},
journal = {CoRR},
volume = {abs/1512.08525},
year = {2015},
url = {http://arxiv.org/abs/1512.08525},
eprinttype = {arXiv},
eprint = {1512.08525},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AlJaddaKOGMRKYR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CampbellRLMHZAADCYHNRKPL14,
author = {Matthew P. Campbell and
Ren{\'{e}} Ranzinger and
Thomas L{\"{u}}tteke and
Julien Mariethoz and
Catherine A. Hayes and
Jingyu Zhang and
Yukie Akune and
Kiyoko F. Aoki{-}Kinoshita and
David Damerell and
Giorgio Carta and
William S. York and
Stuart M. Haslam and
Hisashi Narimatsu and
Pauline M. Rudd and
Niclas G. Karlsson and
Nicolle H. Packer and
Fr{\'{e}}d{\'{e}}rique Lisacek},
title = {Toolboxes for a standardised and systematic study of glycans},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-1}},
pages = {S9},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S1-S9},
doi = {10.1186/1471-2105-15-S1-S9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CampbellRLMHZAADCYHNRKPL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigdataconf/AlJaddaKOGMY14,
author = {Khalifeh AlJadda and
Mohammed Korayem and
Camilo Ortiz and
Trey Grainger and
John A. Miller and
William S. York},
editor = {Jimmy Lin and
Jian Pei and
Xiaohua Hu and
Wo Chang and
Raghunath Nambiar and
Charu C. Aggarwal and
Nick Cercone and
Vasant G. Honavar and
Jun Huan and
Bamshad Mobasher and
Saumyadipta Pyne},
title = {{PGMHD:} {A} scalable probabilistic graphical model for massive hierarchical
data problems},
booktitle = {2014 {IEEE} International Conference on Big Data {(IEEE} BigData 2014),
Washington, DC, USA, October 27-30, 2014},
pages = {55--60},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/BigData.2014.7004213},
doi = {10.1109/BIGDATA.2014.7004213},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bigdataconf/AlJaddaKOGMY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AlJaddaKOGMY14,
author = {Khalifeh AlJadda and
Mohammed Korayem and
Camilo Ortiz and
Trey Grainger and
John A. Miller and
William S. York},
title = {{PGMHD:} {A} Scalable Probabilistic Graphical Model for Massive Hierarchical
Data Problems},
journal = {CoRR},
volume = {abs/1407.5656},
year = {2014},
url = {http://arxiv.org/abs/1407.5656},
eprinttype = {arXiv},
eprint = {1407.5656},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AlJaddaKOGMY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/simulation/SilverMHBY11,
author = {Gregory A. Silver and
John A. Miller and
Maria Hybinette and
Gregory T. Baramidze and
William S. York},
title = {DeMO: An Ontology for Discrete-event Modeling and Simulation},
journal = {Simul.},
volume = {87},
number = {9},
pages = {747--773},
year = {2011},
url = {https://doi.org/10.1177/0037549710386843},
doi = {10.1177/0037549710386843},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/simulation/SilverMHBY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KatayamaAN10,
author = {Toshiaki Katayama and
Kazuharu Arakawa and
Mitsuteru Nakao and
Keiichiro Ono and
Kiyoko F. Aoki{-}Kinoshita and
Yasunori Yamamoto and
Atsuko Yamaguchi and
Shuichi Kawashima and
Hong{-}Woo Chun and
Jan Aerts and
Bruno Aranda and
Lord H. Barboza and
Raoul Jean Pierre Bonnal and
Richard M. Bruskiewich and
Jan Christian Bryne and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Akira Funahashi and
Paul M. K. Gordon and
Naohisa Goto and
Andreas Groscurth and
Alex Gutteridge and
Richard C. G. Holland and
Yoshinobu Kano and
Edward A. Kawas and
Arnaud Kerhornou and
Eri Kibukawa and
Akira R. Kinjo and
Michael Kuhn and
Hilmar Lapp and
Heikki Lehv{\"{a}}slaiho and
Hiroyuki Nakamura and
Yasukazu Nakamura and
Tatsuya Nishizawa and
Chikashi Nobata and
Tamotsu Noguchi and
Thomas M. Oinn and
Shinobu Okamoto and
Stuart Owen and
Evangelos Pafilis and
Matthew R. Pocock and
Pjotr Prins and
Ren{\'{e}} Ranzinger and
Florian Reisinger and
Lukasz Salw{\'{\i}}nski and
Mark J. Schreiber and
Martin Senger and
Yasumasa Shigemoto and
Daron M. Standley and
Hideaki Sugawara and
Toshiyuki Tashiro and
Oswaldo Trelles and
Rutger A. Vos and
Mark D. Wilkinson and
William S. York and
Christian M. Zmasek and
Kiyoshi Asai and
Toshihisa Takagi},
title = {The {DBCLS} BioHackathon: standardization and interoperability for
bioinformatics web services and workflows},
journal = {J. Biomed. Semant.},
volume = {1},
pages = {8},
year = {2010},
url = {https://doi.org/10.1186/2041-1480-1-8},
doi = {10.1186/2041-1480-1-8},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KatayamaAN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/SilverBMYK09,
author = {Gregory A. Silver and
Kushel Rai Bellipady and
John A. Miller and
William S. York and
Krys J. Kochut},
editor = {Ann Dunkin and
Ricki G. Ingalls and
Enver Y{\"{u}}cesan and
Manuel D. Rossetti and
Ray Hill and
Bj{\"{o}}rn Johansson},
title = {Supporting Interoperability using the Discrete-event Modeling Ontology
(DeMO)},
booktitle = {Proceedings of the 2009 Winter Simulation Conference, {WSC} 2009,
Hilton Austin Hotel, Austin, TX, USA, December 13-16, 2009},
pages = {1399--1410},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/WSC.2009.5429288},
doi = {10.1109/WSC.2009.5429288},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wsc/SilverBMYK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/EavensonJNMKY08,
author = {Matthew Eavenson and
Maciej Janik and
Shravya Nimmagadda and
John A. Miller and
Krys J. Kochut and
William S. York},
editor = {Ion I. Mandoiu and
Raj Sunderraman and
Alexander Zelikovsky},
title = {GlycoBrowser: {A} Tool for Contextual Visualization of Biological
Data and Pathways Using Ontologies},
booktitle = {Bioinformatics Research and Applications, Fourth International Symposium,
{ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4983},
pages = {305--316},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-79450-9\_29},
doi = {10.1007/978-3-540-79450-9\_29},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/EavensonJNMKY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itng/NimmagaddaBEHJNNSKMY08,
author = {Shravya Nimmagadda and
Amrita Basu and
Matthew Eavenson and
Jun Han and
Maciej Janik and
Rajesh Narra and
Kishore Nimmagadda and
Arpan Sharma and
Krys J. Kochut and
John A. Miller and
William S. York},
editor = {Shahram Latifi},
title = {GlycoVault: {A} Bioinformatics Infrastructure for Glycan Pathway Visualization,
Analysis and Modeling},
booktitle = {Fifth International Conference on Information Technology: New Generations
{(ITNG} 2008), 7-8 April 2008, Las Vegas, Nevada, {USA}},
pages = {692--697},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/ITNG.2008.242},
doi = {10.1109/ITNG.2008.242},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/itng/NimmagaddaBEHJNNSKMY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fois/ThomasSY06,
author = {Christopher J. Thomas and
Amit P. Sheth and
William S. York},
editor = {Brandon Bennett and
Christiane Fellbaum},
title = {Modular Ontology Design Using Canonical Building Blocks in the Biochemistry
Domain},
booktitle = {Formal Ontology in Information Systems, Proceedings of the Fourth
International Conference, {FOIS} 2006, Baltimore, Maryland, USA, November
9-11, 2006},
series = {Frontiers in Artificial Intelligence and Applications},
volume = {150},
pages = {115--127},
publisher = {{IOS} Press},
year = {2006},
url = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=2198},
timestamp = {Tue, 13 Mar 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fois/ThomasSY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/SahooTSYT06,
author = {Satya Sanket Sahoo and
Christopher Thomas and
Amit P. Sheth and
William S. York and
Samir Tartir},
editor = {Les Carr and
David De Roure and
Arun Iyengar and
Carole A. Goble and
Michael Dahlin},
title = {Knowledge modeling and its application in life sciences: a tale of
two ontologies},
booktitle = {Proceedings of the 15th international conference on World Wide Web,
{WWW} 2006, Edinburgh, Scotland, UK, May 23-26, 2006},
pages = {317--326},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1135777.1135826},
doi = {10.1145/1135777.1135826},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/www/SahooTSYT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/ValafarVY99,
author = {Faramarz Valafar and
Homayoun Valafar and
William S. York},
editor = {Hamid R. Arabnia},
title = {Identification of {H-NMR} Spectra of Xyloglucan Oligosaccharides:
{A} Comparative Study of Artificial Neural Networks and Bayesian Classification
Using Nonparametric Density Estimation},
booktitle = {Proceedings of the International Conference on Artificial Intelligence,
{IC-AI} '99, June 28 - July 1, 1999, Las Vegas, Nevada, USA, Volume
2},
pages = {549--553},
publisher = {{CSREA} Press},
year = {1999},
timestamp = {Fri, 26 Mar 2004 14:00:31 +0100},
biburl = {https://dblp.org/rec/conf/icai/ValafarVY99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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