Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBibTeX records: Jinbo Xu
@article{DBLP:journals/spl/XuWHZ24,
author = {Jinbo Xu and
Yong Wang and
Xiaoyu He and
Yiqun Zou},
title = {Support-Query Mutual Promotion and Classification Correction Network
for Few-Shot Object Detection},
journal = {{IEEE} Signal Process. Lett.},
volume = {31},
pages = {201--205},
year = {2024},
url = {https://doi.org/10.1109/LSP.2023.3343195},
doi = {10.1109/LSP.2023.3343195},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spl/XuWHZ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenXQYXT23,
author = {Bo Chen and
Ziwei Xie and
Jiezhong Qiu and
Zhaofeng Ye and
Jinbo Xu and
Jie Tang},
title = {Improved the heterodimer protein complex prediction with protein language
models},
journal = {Briefings Bioinform.},
volume = {24},
number = {4},
year = {2023},
url = {https://doi.org/10.1093/bib/bbad221},
doi = {10.1093/BIB/BBAD221},
timestamp = {Wed, 06 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChenXQYXT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuJLX23,
author = {Fandi Wu and
Xiaoyang Jing and
Xiao Luo and
Jinbo Xu},
title = {Improving protein structure prediction using templates and sequence
embedding},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac723},
doi = {10.1093/BIOINFORMATICS/BTAC723},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuJLX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23,
author = {Alessio Del Conte and
Adel Bouhraoua and
Mahta Mehdiabadi and
Damiano Clementel and
Alexander Miguel Monzon and
Alex S. Holehouse and
Daniel A. Griffith and
Ryan J. Emenecker and
Ashwini Patil and
Ronesh Sharma and
Tatsuhiko Tsunoda and
Alok Sharma and
Yi Jun Tang and
Bin Liu and
Claudio Mirabello and
Bj{\"{o}}rn Wallner and
Burkhard Rost and
Dagmar Ilzh{\"{o}}fer and
Maria Littmann and
Michael Heinzinger and
Lea I M. Krautheimer and
Michael Bernhofer and
Liam J. McGuffin and
Isabelle Callebaut and
Tristan Bitard Feildel and
Jian Liu and
Jianlin Cheng and
Zhiye Guo and
Jinbo Xu and
Sheng Wang and
Nawar Malhis and
J{\"{o}}rg Gsponer and
Chol{-}Song Kim and
Kun{-}Sop Han and
Myong{-}Chol Ma and
Lukasz A. Kurgan and
Sina Ghadermarzi and
Akila Katuwawala and
Bi Zhao and
Zhenling Peng and
Zhonghua Wu and
Gang Hu and
Kui Wang and
Md. Tamjidul Hoque and
Md Wasi Ul Kabir and
Michele Vendruscolo and
Pietro Sormanni and
Min Li and
Fuhao Zhang and
Pengzhen Jia and
Yida Wang and
Michail Yu. Lobanov and
Oxana V. Galzitskaya and
Wim F. Vranken and
Adri{\'{a}}n D{\'{\i}}az and
Thomas Litfin and
Yaoqi Zhou and
Jack Hanson and
Kuldip K. Paliwal and
Zsuzsanna Doszt{\'{a}}nyi and
G{\'{a}}bor Erd{\"{o}}s and
Silvio C. E. Tosatto and
Damiano Piovesan},
title = {{CAID} prediction portal: a comprehensive service for predicting intrinsic
disorder and binding regions in proteins},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{W1}},
pages = {62--69},
year = {2023},
url = {https://doi.org/10.1093/nar/gkad430},
doi = {10.1093/NAR/GKAD430},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hci/XuXZ23,
author = {Wenyi Xu and
Jinbo Xu and
Zhipeng Zhang},
editor = {Aaron Marcus and
Elizabeth Rosenzweig and
Marcelo M. Soares},
title = {Research on the Aesthetic Connotation of New Media Ink Painting Art
Based on Grounded Theory},
booktitle = {Design, User Experience, and Usability - 12th International Conference,
{DUXU} 2023, Held as Part of the 25th {HCI} International Conference,
{HCII} 2023, Copenhagen, Denmark, July 23-28, 2023, Proceedings, Part
{V}},
series = {Lecture Notes in Computer Science},
volume = {14034},
pages = {196--214},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-35705-3\_15},
doi = {10.1007/978-3-031-35705-3\_15},
timestamp = {Fri, 21 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hci/XuXZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-03906,
author = {Fang Wu and
Huiling Qin and
Siyuan Li and
Stan Z. Li and
Xianyuan Zhan and
Jinbo Xu},
title = {InstructBio: {A} Large-scale Semi-supervised Learning Paradigm for
Biochemical Problems},
journal = {CoRR},
volume = {abs/2304.03906},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.03906},
doi = {10.48550/ARXIV.2304.03906},
eprinttype = {arXiv},
eprint = {2304.03906},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-03906.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LaiX22,
author = {Boqiao Lai and
Jinbo Xu},
title = {Accurate protein function prediction via graph attention networks
with predicted structure information},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab502},
doi = {10.1093/BIB/BBAB502},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LaiX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TranXL22,
author = {Ngoc Hieu Tran and
Jinbo Xu and
Ming Li},
title = {A tale of solving two computational challenges in protein science:
neoantigen prediction and protein structure prediction},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab493},
doi = {10.1093/BIB/BBAB493},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TranXL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieX22,
author = {Ziwei Xie and
Jinbo Xu},
title = {Deep graph learning of inter-protein contacts},
journal = {Bioinform.},
volume = {38},
number = {4},
pages = {947--953},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab761},
doi = {10.1093/BIOINFORMATICS/BTAB761},
timestamp = {Wed, 23 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KongJZZSXB22,
author = {Lupeng Kong and
Fusong Ju and
Wei{-}Mou Zheng and
Jianwei Zhu and
Shiwei Sun and
Jinbo Xu and
Dongbo Bu},
title = {ProALIGN: Directly Learning Alignments for Protein Structure Prediction
via Exploiting Context-Specific Alignment Motifs},
journal = {J. Comput. Biol.},
volume = {29},
number = {2},
pages = {92--105},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0430},
doi = {10.1089/CMB.2021.0430},
timestamp = {Fri, 01 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/KongJZZSXB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LaiQZZKDXH22,
author = {Boqiao Lai and
Sheng Qian and
Hanwei Zhang and
Siwei Zhang and
Anna A. Kozlova and
Jubao Duan and
Jinbo Xu and
Xin He},
title = {Annotating functional effects of non-coding variants in neuropsychiatric
cell types by deep transfer learning},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {5},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010011},
doi = {10.1371/JOURNAL.PCBI.1010011},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LaiQZZKDXH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hci/XuW22,
author = {Jinbo Xu and
Yueqing Wei},
editor = {Constantine Stephanidis and
Margherita Antona and
Stavroula Ntoa and
Gavriel Salvendy},
title = {Analysis of the Attainable Design Paths of Non-heritage Cultural Tourism
Immersion Experience - An Example of the Tujia City Living Room Project
in Enshi Prefecture},
booktitle = {{HCI} International 2022 - Late Breaking Posters - 24th International
Conference on Human-Computer Interaction, {HCII} 2022, Virtual Event,
June 26 - July 1, 2022, Proceedings, Part {I}},
series = {Communications in Computer and Information Science},
volume = {1654},
pages = {370--377},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-19679-9\_47},
doi = {10.1007/978-3-031-19679-9\_47},
timestamp = {Tue, 06 Dec 2022 09:48:11 +0100},
biburl = {https://dblp.org/rec/conf/hci/XuW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-03447,
author = {Fang Wu and
Tao Yu and
Dragomir Radev and
Jinbo Xu},
title = {When Geometric Deep Learning Meets Pretrained Protein Language Models},
journal = {CoRR},
volume = {abs/2212.03447},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.03447},
doi = {10.48550/ARXIV.2212.03447},
eprinttype = {arXiv},
eprint = {2212.03447},
timestamp = {Mon, 02 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-03447.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JingX21,
author = {Xiaoyang Jing and
Jinbo Xu},
title = {Improved protein model quality assessment by integrating sequential
and pairwise features using deep learning},
journal = {Bioinform.},
volume = {36},
number = {22-23},
pages = {5361--5367},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa1037},
doi = {10.1093/BIOINFORMATICS/BTAA1037},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JingX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuLMDSXT21,
author = {Fengyuan Hu and
Jia Lu and
Louise S. Matheson and
Manuel D. D{\'{\i}}az{-}Mu{\~{n}}oz and
Alexander Saveliev and
Jinbo Xu and
Martin Turner},
title = {ORFLine: a bioinformatic pipeline to prioritize small open reading
frames identifies candidate secreted small proteins from lymphocytes},
journal = {Bioinform.},
volume = {37},
number = {19},
pages = {3152--3159},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab339},
doi = {10.1093/BIOINFORMATICS/BTAB339},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuLMDSXT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiX21,
author = {Jin Li and
Jinbo Xu},
title = {Study of real-valued distance prediction for protein structure prediction
with deep learning},
journal = {Bioinform.},
volume = {37},
number = {19},
pages = {3197--3203},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab333},
doi = {10.1093/BIOINFORMATICS/BTAB333},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/XuML21,
author = {Jinbo Xu and
Matthew McPartlon and
Jin Li},
title = {Improved protein structure prediction by deep learning irrespective
of co-evolution information},
journal = {Nat. Mach. Intell.},
volume = {3},
number = {7},
pages = {601--609},
year = {2021},
url = {https://doi.org/10.1038/s42256-021-00348-5},
doi = {10.1038/S42256-021-00348-5},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/natmi/XuML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ncs/JingX21,
author = {Xiaoyang Jing and
Jinbo Xu},
title = {Fast and effective protein model refinement using deep graph neural
networks},
journal = {Nat. Comput. Sci.},
volume = {1},
number = {7},
pages = {462--469},
year = {2021},
url = {https://doi.org/10.1038/s43588-021-00098-9},
doi = {10.1038/S43588-021-00098-9},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ncs/JingX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WuX21,
author = {Fandi Wu and
Jinbo Xu},
title = {Deep template-based protein structure prediction},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {5},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1008954},
doi = {10.1371/JOURNAL.PCBI.1008954},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WuX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/DingMXX21,
author = {Fan Ding and
Jianzhu Ma and
Jinbo Xu and
Yexiang Xue},
editor = {Marina Meila and
Tong Zhang},
title = {{XOR-CD:} Linearly Convergent Constrained Structure Generation},
booktitle = {Proceedings of the 38th International Conference on Machine Learning,
{ICML} 2021, 18-24 July 2021, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {139},
pages = {2728--2738},
publisher = {{PMLR}},
year = {2021},
url = {http://proceedings.mlr.press/v139/ding21a.html},
timestamp = {Wed, 25 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/DingMXX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/DingJM0XX21,
author = {Fan Ding and
Nan Jiang and
Jianzhu Ma and
Jian Peng and
Jinbo Xu and
Yexiang Xue},
editor = {Cassio P. de Campos and
Marloes H. Maathuis and
Erik Quaeghebeur},
title = {{PALM:} Probabilistic area loss Minimization for Protein Sequence
Alignment},
booktitle = {Proceedings of the Thirty-Seventh Conference on Uncertainty in Artificial
Intelligence, {UAI} 2021, Virtual Event, 27-30 July 2021},
series = {Proceedings of Machine Learning Research},
volume = {161},
pages = {1100--1109},
publisher = {{AUAI} Press},
year = {2021},
url = {https://proceedings.mlr.press/v161/ding21c.html},
timestamp = {Fri, 22 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/uai/DingJM0XX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AghamiriSNHSNX20,
author = {Sara Sadat Aghamiri and
Vidisha Singh and
Aur{\'{e}}lien Naldi and
Tom{\'{a}}s Helikar and
Sylvain Soliman and
Anna Niarakis and
Jinbo Xu},
title = {Automated inference of Boolean models from molecular interaction maps
using CaSQ},
journal = {Bioinform.},
volume = {36},
number = {16},
pages = {4473--4482},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa484},
doi = {10.1093/BIOINFORMATICS/BTAA484},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AghamiriSNHSNX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/mimb/JingZWX20,
author = {Xiaoyang Jing and
Hong Zeng and
Sheng Wang and
Jinbo Xu},
editor = {Stefan Canzar and
Francisca Rojas Ringeling},
title = {A Web-Based Protocol for Interprotein Contact Prediction by Deep Learning},
booktitle = {Protein-Protein Interaction Networks, Methods and Protocols},
series = {Methods in Molecular Biology},
volume = {2074},
pages = {67--80},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-1-4939-9873-9\_6},
doi = {10.1007/978-1-4939-9873-9\_6},
timestamp = {Tue, 07 May 2024 20:28:21 +0200},
biburl = {https://dblp.org/rec/series/mimb/JingZWX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangFWLXZG19,
author = {Sheng Wang and
Shiyang Fei and
Zongan Wang and
Yu Li and
Jinbo Xu and
Feng Zhao and
Xin Gao},
title = {PredMP: a web server for de novo prediction and visualization of membrane
proteins},
journal = {Bioinform.},
volume = {35},
number = {4},
pages = {691--693},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty684},
doi = {10.1093/BIOINFORMATICS/BTY684},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangFWLXZG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiNXGCW19,
author = {Zhen Li and
Chongming Ni and
Jinbo Xu and
Xin Gao and
Shuguang Cui and
Sheng Wang},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Transmembrane Topology Identification by Fusing Evolutionary and Co-evolutionary
Information with Cascaded Bidirectional Transformers},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {136--143},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3342140},
doi = {10.1145/3307339.3342140},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiNXGCW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiNXGCW19a,
author = {Zhen Li and
Chongming Ni and
Jinbo Xu and
Xin Gao and
Shuguang Cui and
Sheng Wang},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Transmembrane Topology Identification by Fusing Evolutionary and Co-evolutionary
Information with Cascaded Bidirectional Transformers},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {547},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3343256},
doi = {10.1145/3307339.3343256},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiNXGCW19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Xu19,
author = {Jinbo Xu},
editor = {Lenore J. Cowen},
title = {stance-Based Protein Folding Powered by Deep Learning},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {324--325},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Xu19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuWBX18,
author = {Jianwei Zhu and
Sheng Wang and
Dongbo Bu and
Jinbo Xu},
title = {Protein threading using residue co-variation and deep learning},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i263--i273},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty278},
doi = {10.1093/BIOINFORMATICS/BTY278},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuWBX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashemifarNKX18,
author = {Somaye Hashemifar and
Behnam Neyshabur and
Aly A. Khan and
Jinbo Xu},
title = {Predicting protein-protein interactions through sequence-based deep
learning},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i802--i810},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty573},
doi = {10.1093/BIOINFORMATICS/BTY573},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashemifarNKX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaoWDX18,
author = {Yujuan Gao and
Sheng Wang and
Minghua Deng and
Jinbo Xu},
title = {RaptorX-Angle: real-value prediction of protein backbone dihedral
angles through a hybrid method of clustering and deep learning},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {4},
pages = {73--84},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2065-x},
doi = {10.1186/S12859-018-2065-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaoWDX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZengWZZLWX18,
author = {Hong Zeng and
Sheng Wang and
Tianming Zhou and
Feifeng Zhao and
Xiufeng Li and
Qing Wu and
Jinbo Xu},
title = {ComplexContact: a web server for inter-protein contact prediction
using deep learning},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Webserver-Issue},
pages = {W432--W437},
year = {2018},
url = {https://doi.org/10.1093/nar/gky420},
doi = {10.1093/NAR/GKY420},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZengWZZLWX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhouWX18,
author = {Tianming Zhou and
Sheng Wang and
Jinbo Xu},
editor = {Benjamin J. Raphael},
title = {Deep Learning Reveals Many More Inter-protein Residue-Residue Contacts
than Direct Coupling Analysis},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {295--296},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhouWX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/0001SLZX17,
author = {Sheng Wang and
Siqi Sun and
Zhen Li and
Renyu Zhang and
Jinbo Xu},
title = {Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning
Model},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {1},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005324},
doi = {10.1371/JOURNAL.PCBI.1005324},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/0001SLZX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangHXS17,
author = {Zhiyong Wang and
Benika Hall and
Jinbo Xu and
Xinghua Shi},
title = {A Sparse Learning Framework for Joint Effect Analysis of Copy Number
Variants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {5},
pages = {1013--1027},
year = {2017},
url = {https://doi.org/10.1109/TCBB.2015.2462332},
doi = {10.1109/TCBB.2015.2462332},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangHXS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Xu17,
author = {Jinbo Xu},
editor = {Nurit Haspel and
Lenore J. Cowen and
Amarda Shehu and
Tamer Kahveci and
Giuseppe Pozzi},
title = {Folding Large Proteins by Ultra-Deep Learning},
booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2017, Boston,
MA, USA, August 20-23, 2017},
pages = {642},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3107411.3107456},
doi = {10.1145/3107411.3107456},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Xu17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiWYX17,
author = {Zhen Li and
Sheng Wang and
Yizhou Yu and
Jinbo Xu},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Folding Membrane Proteins by Deep Transfer Learning},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {380--382},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiWYX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LiWYX17,
author = {Zhen Li and
Sheng Wang and
Yizhou Yu and
Jinbo Xu},
title = {Predicting membrane protein contacts from non-membrane proteins by
deep transfer learning},
journal = {CoRR},
volume = {abs/1704.07207},
year = {2017},
url = {http://arxiv.org/abs/1704.07207},
eprinttype = {arXiv},
eprint = {1704.07207},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LiWYX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-08407,
author = {Sheng Wang and
Zhen Li and
Yizhou Yu and
Jinbo Xu},
title = {Folding membrane proteins by deep transfer learning},
journal = {CoRR},
volume = {abs/1708.08407},
year = {2017},
url = {http://arxiv.org/abs/1708.08407},
eprinttype = {arXiv},
eprint = {1708.08407},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1708-08407.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashemifarMNCX16,
author = {Somaye Hashemifar and
Jianzhu Ma and
Hammad Naveed and
Stefan Canzar and
Jinbo Xu},
title = {ModuleAlign: module-based global alignment of protein-protein interaction
networks},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {658--664},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw447},
doi = {10.1093/BIOINFORMATICS/BTW447},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashemifarMNCX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMX16,
author = {Sheng Wang and
Jianzhu Ma and
Jinbo Xu},
title = {AUCpreD: proteome-level protein disorder prediction by AUC-maximized
deep convolutional neural fields},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {672--679},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw446},
doi = {10.1093/BIOINFORMATICS/BTW446},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HashemifarHX16,
author = {Somaye Hashemifar and
Qixing Huang and
Jinbo Xu},
title = {Joint Alignment of Multiple Protein-Protein Interaction Networks via
Convex Optimization},
journal = {J. Comput. Biol.},
volume = {23},
number = {11},
pages = {903--911},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0025},
doi = {10.1089/CMB.2016.0025},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HashemifarHX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SulakheXTDBHWDA16,
author = {Dinanath Sulakhe and
Bingqing Xie and
Andrew Taylor and
Mark D'Souza and
Sandhya Balasubramanian and
Somaye Hashemifar and
Steven White and
Utpal J. Dave and
Gady Agam and
Jinbo Xu and
Sheng Wang and
T. Conrad Gilliam and
Natalia Maltsev},
title = {Lynx: a knowledge base and an analytical workbench for integrative
medicine},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {882--887},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1257},
doi = {10.1093/NAR/GKV1257},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SulakheXTDBHWDA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangLZLX16,
author = {Sheng Wang and
Wei Li and
Renyu Zhang and
Shiwang Liu and
Jinbo Xu},
title = {CoinFold: a web server for protein contact prediction and contact-assisted
protein folding},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W361--W366},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw307},
doi = {10.1093/NAR/GKW307},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangLZLX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangLLX16,
author = {Sheng Wang and
Wei Li and
Shiwang Liu and
Jinbo Xu},
title = {RaptorX-Property: a web server for protein structure property prediction},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W430--W435},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw306},
doi = {10.1093/NAR/GKW306},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangLLX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/WangSX16,
author = {Sheng Wang and
Siqi Sun and
Jinbo Xu},
editor = {Paolo Frasconi and
Niels Landwehr and
Giuseppe Manco and
Jilles Vreeken},
title = {AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence
Labeling},
booktitle = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2016, Riva del Garda, Italy, September 19-23, 2016,
Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9852},
pages = {1--16},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-46227-1\_1},
doi = {10.1007/978-3-319-46227-1\_1},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pkdd/WangSX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HashemifarHX16,
author = {Somaye Hashemifar and
Qixing Huang and
Jinbo Xu},
editor = {Mona Singh},
title = {Joint Alignment of Multiple Protein-Protein Interaction Networks via
Convex Optimization},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {267--269},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HashemifarHX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/TangTWX16,
author = {Qingming Tang and
Lifu Tu and
Weiran Wang and
Jinbo Xu},
title = {Network Inference by Learned Node-Specific Degree Prior},
journal = {CoRR},
volume = {abs/1602.02386},
year = {2016},
url = {http://arxiv.org/abs/1602.02386},
eprinttype = {arXiv},
eprint = {1602.02386},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/TangTWX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HashemifarHX16,
author = {Somaye Hashemifar and
Qixing Huang and
Jinbo Xu},
title = {Joint alignment of multiple protein-protein interaction networks via
convex optimization},
journal = {CoRR},
volume = {abs/1604.03482},
year = {2016},
url = {http://arxiv.org/abs/1604.03482},
eprinttype = {arXiv},
eprint = {1604.03482},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HashemifarHX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangSLZX16,
author = {Sheng Wang and
Siqi Sun and
Zhen Li and
Renyu Zhang and
Jinbo Xu},
title = {Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning
Model},
journal = {CoRR},
volume = {abs/1609.00680},
year = {2016},
url = {http://arxiv.org/abs/1609.00680},
eprinttype = {arXiv},
eprint = {1609.00680},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/WangSLZX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/sbcs/XuWM15,
author = {Jinbo Xu and
Sheng Wang and
Jianzhu Ma},
title = {Protein Homology Detection Through Alignment of Markov Random Fields
- Using MRFalign},
series = {Springer Briefs in Computer Science},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-14914-1},
doi = {10.1007/978-3-319-14914-1},
isbn = {978-3-319-14913-4},
timestamp = {Thu, 06 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/sbcs/XuWM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaWWX15,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
title = {Protein contact prediction by integrating joint evolutionary coupling
analysis and supervised learning},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3506--3513},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv472},
doi = {10.1093/BIOINFORMATICS/BTV472},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaWWX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XieABXGMB15,
author = {Bingqing Xie and
Gady Agam and
Sandhya Balasubramanian and
Jinbo Xu and
T. Conrad Gilliam and
Natalia Maltsev and
Daniela B{\"{o}}rnigen},
title = {Disease Gene Prioritization Using Network and Feature},
journal = {J. Comput. Biol.},
volume = {22},
number = {4},
pages = {313--323},
year = {2015},
url = {https://doi.org/10.1089/cmb.2015.0001},
doi = {10.1089/CMB.2015.0001},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XieABXGMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/js/LvDNXXX15,
author = {Qi Lv and
Yong Dou and
Xin Niu and
Jiaqing Xu and
Jinbo Xu and
Fei Xia},
title = {Urban Land Use and Land Cover Classification Using Remotely Sensed
{SAR} Data through Deep Belief Networks},
journal = {J. Sensors},
volume = {2015},
pages = {538063:1--538063:10},
year = {2015},
url = {https://doi.org/10.1155/2015/538063},
doi = {10.1155/2015/538063},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/js/LvDNXXX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/SunWX15,
author = {Siqi Sun and
Hai Wang and
Jinbo Xu},
editor = {Guy Lebanon and
S. V. N. Vishwanathan},
title = {Inferring Block Structure of Graphical Models in Exponential Families},
booktitle = {Proceedings of the Eighteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2015, San Diego, California,
USA, May 9-12, 2015},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {38},
publisher = {JMLR.org},
year = {2015},
url = {http://proceedings.mlr.press/v38/sun15.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/conf/aistats/SunWX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TangW0MX15,
author = {Qingming Tang and
Sheng Wang and
Jian Peng and
Jianzhu Ma and
Jinbo Xu},
title = {Bermuda: de novo assembly of transcripts with new insights for handling
uneven coverage},
booktitle = {Proceedings of the 6th {ACM} Conference on Bioinformatics, Computational
Biology and Health Informatics, {BCB} 2015, Atlanta, GA, USA, September
9-12, 2015},
pages = {166--175},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2808719.2808736},
doi = {10.1145/2808719.2808736},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/TangW0MX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HashemifarNX15,
author = {Somaye Hashemifar and
Behnam Neyshabur and
Jinbo Xu},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {Joint inference of tissue-specific networks with a scale free topology},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {290--294},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359696},
doi = {10.1109/BIBM.2015.7359696},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HashemifarNX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/SunMWX15,
author = {Siqi Sun and
Jianzhu Ma and
Sheng Wang and
Jinbo Xu},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {Predicting diverse M-best protein contact maps},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {1287--1295},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359865},
doi = {10.1109/BIBM.2015.7359865},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/SunMWX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/TangSX15,
author = {Qingming Tang and
Siqi Sun and
Jinbo Xu},
editor = {Francis R. Bach and
David M. Blei},
title = {Learning Scale-Free Networks by Dynamic Node Specific Degree Prior},
booktitle = {Proceedings of the 32nd International Conference on Machine Learning,
{ICML} 2015, Lille, France, 6-11 July 2015},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {37},
pages = {2247--2255},
publisher = {JMLR.org},
year = {2015},
url = {http://proceedings.mlr.press/v37/tangb15.html},
timestamp = {Wed, 29 May 2019 08:41:45 +0200},
biburl = {https://dblp.org/rec/conf/icml/TangSX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmlc/LvDNXX15,
author = {Qi Lv and
Yong Dou and
Xin Niu and
Jiaqing Xu and
Jinbo Xu},
title = {Classification of Tiangong-1 hyperspectral remote sensing image via
contextual sparse coding},
booktitle = {2015 International Conference on Machine Learning and Cybernetics,
{ICMLC} 2015, Guangzhou, China, July 12-15, 2015},
pages = {128--133},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/ICMLC.2015.7340910},
doi = {10.1109/ICMLC.2015.7340910},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/icmlc/LvDNXX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipccc/XuXP15,
author = {Jinbo Xu and
Weixia Xu and
Zhengbin Pang},
title = {A low-latency fine-grained dynamic shared cache management scheme
for chip multi-processor},
booktitle = {34th {IEEE} International Performance Computing and Communications
Conference, {IPCCC} 2015, Nanjing, China, December 14-16, 2015},
pages = {1--7},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/PCCC.2015.7410332},
doi = {10.1109/PCCC.2015.7410332},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipccc/XuXP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SunKX15,
author = {Siqi Sun and
Mladen Kolar and
Jinbo Xu},
editor = {Corinna Cortes and
Neil D. Lawrence and
Daniel D. Lee and
Masashi Sugiyama and
Roman Garnett},
title = {Learning structured densities via infinite dimensional exponential
families},
booktitle = {Advances in Neural Information Processing Systems 28: Annual Conference
on Neural Information Processing Systems 2015, December 7-12, 2015,
Montreal, Quebec, Canada},
pages = {2287--2295},
year = {2015},
url = {https://proceedings.neurips.cc/paper/2015/hash/83adc9225e4deb67d7ce42d58fe5157c-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SunKX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/TangY0X15,
author = {Qingming Tang and
Chao Yang and
Jian Peng and
Jinbo Xu},
editor = {Annalisa Appice and
Pedro Pereira Rodrigues and
V{\'{\i}}tor Santos Costa and
Jo{\~{a}}o Gama and
Al{\'{\i}}pio Jorge and
Carlos Soares},
title = {Exact Hybrid Covariance Thresholding for Joint Graphical Lasso},
booktitle = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2015, Porto, Portugal, September 7-11, 2015, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9285},
pages = {593--607},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23525-7\_36},
doi = {10.1007/978-3-319-23525-7\_36},
timestamp = {Mon, 30 Nov 2020 08:47:26 +0100},
biburl = {https://dblp.org/rec/conf/pkdd/TangY0X15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaWWX15,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
editor = {Teresa M. Przytycka},
title = {Protein Contact Prediction by Integrating Joint Evolutionary Coupling
Analysis and Supervised Learning},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {218--221},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_21},
doi = {10.1007/978-3-319-16706-0\_21},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaWWX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/MaZX15,
author = {Jianzhu Ma and
Feng Zhao and
Jinbo Xu},
editor = {Marina Meila and
Tom Heskes},
title = {Structure Learning Constrained by Node-Specific Degree Distribution},
booktitle = {Proceedings of the Thirty-First Conference on Uncertainty in Artificial
Intelligence, {UAI} 2015, July 12-16, 2015, Amsterdam, The Netherlands},
pages = {533--541},
publisher = {{AUAI} Press},
year = {2015},
url = {http://auai.org/uai2015/proceedings/papers/105.pdf},
timestamp = {Thu, 12 Mar 2020 11:31:09 +0100},
biburl = {https://dblp.org/rec/conf/uai/MaZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/TangY0X15,
author = {Qingming Tang and
Chao Yang and
Jian Peng and
Jinbo Xu},
title = {Exact Hybrid Covariance Thresholding for Joint Graphical Lasso},
journal = {CoRR},
volume = {abs/1503.02128},
year = {2015},
url = {http://arxiv.org/abs/1503.02128},
eprinttype = {arXiv},
eprint = {1503.02128},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/TangY0X15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/TangSYX15,
author = {Qingming Tang and
Siqi Sun and
Chao Yang and
Jinbo Xu},
title = {Learning Scale Free Network by Node Specific Degree Prior},
journal = {CoRR},
volume = {abs/1503.02129},
year = {2015},
url = {http://arxiv.org/abs/1503.02129},
eprinttype = {arXiv},
eprint = {1503.02129},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/TangSYX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangSX15a,
author = {Sheng Wang and
Siqi Sun and
Jinbo Xu},
title = {AUC-maximized Deep Convolutional Neural Fields for Sequence Labeling},
journal = {CoRR},
volume = {abs/1511.05265},
year = {2015},
url = {http://arxiv.org/abs/1511.05265},
eprinttype = {arXiv},
eprint = {1511.05265},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/WangSX15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/Wang0MX15,
author = {Sheng Wang and
Jian Peng and
Jianzhu Ma and
Jinbo Xu},
title = {Protein secondary structure prediction using deep convolutional neural
fields},
journal = {CoRR},
volume = {abs/1512.00843},
year = {2015},
url = {http://arxiv.org/abs/1512.00843},
eprinttype = {arXiv},
eprint = {1512.00843},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/Wang0MX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashemifarX14,
author = {Somaye Hashemifar and
Jinbo Xu},
title = {HubAlign: an accurate and efficient method for global alignment of
protein-protein interaction networks},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {438--444},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu450},
doi = {10.1093/BIOINFORMATICS/BTU450},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashemifarX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangXS14,
author = {Zhiyong Wang and
Jinbo Xu and
Xinghua Shi},
title = {Finding Alternative Expression Quantitative Trait Loci by Exploring
Sparse Model Space},
journal = {J. Comput. Biol.},
volume = {21},
number = {5},
pages = {385--393},
year = {2014},
url = {https://doi.org/10.1089/cmb.2014.0026},
doi = {10.1089/CMB.2014.0026},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangXS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SulakheBXFTWBDXBGM14,
author = {Dinanath Sulakhe and
Sandhya Balasubramanian and
Bingqing Xie and
Bo Feng and
Andrew Taylor and
Sheng Wang and
Eduardo Berrocal and
Utpal J. Dave and
Jinbo Xu and
Daniela B{\"{o}}rnigen and
T. Conrad Gilliam and
Natalia Maltsev},
title = {Lynx: a database and knowledge extraction engine for integrative medicine},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1007--1012},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1166},
doi = {10.1093/NAR/GKT1166},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SulakheBXFTWBDXBGM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MaWWX14,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
title = {MRFalign: Protein Homology Detection through Alignment of Markov Random
Fields},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {3},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003500},
doi = {10.1371/JOURNAL.PCBI.1003500},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MaWWX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/trets/LeiGDMX14,
author = {Yuanwu Lei and
Lei Guo and
Yong Dou and
Sheng Ma and
Jinbo Xu},
title = {{FPGA} Implementation of a Special-Purpose {VLIW} Structure for Double-Precision
Elementary Function},
journal = {{ACM} Trans. Reconfigurable Technol. Syst.},
volume = {7},
number = {2},
pages = {8:1--8:21},
year = {2014},
url = {https://doi.org/10.1145/2617594},
doi = {10.1145/2617594},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/trets/LeiGDMX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/SunZX14,
author = {Siqi Sun and
Yuancheng Zhu and
Jinbo Xu},
title = {Adaptive Variable Clustering in Gaussian Graphical Models},
booktitle = {Proceedings of the Seventeenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2014, Reykjavik, Iceland, April
22-25, 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {33},
pages = {931--939},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v33/sun14.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/conf/aistats/SunZX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WangXS14,
author = {Zhiyong Wang and
Jinbo Xu and
Xinghua Shi},
editor = {Pierre Baldi and
Wei Wang},
title = {CNVnet: combining sparse learning and biological networks to capture
joint effect of copy number variants},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {128--137},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649419},
doi = {10.1145/2649387.2649419},
timestamp = {Tue, 29 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/WangXS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipccc/XuXWP14,
author = {Jinbo Xu and
Weixia Xu and
Kefei Wang and
Zhengbin Pang},
title = {Low-latency last-level cache structure based on grouped cores in Chip
Multi-Processor},
booktitle = {{IEEE} 33rd International Performance Computing and Communications
Conference, {IPCCC} 2014, Austin, TX, USA, December 5-7, 2014},
pages = {1--2},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/PCCC.2014.7017021},
doi = {10.1109/PCCC.2014.7017021},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipccc/XuXWP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaWWX14,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
editor = {Roded Sharan},
title = {MRFalign: Protein Homology Detection through Alignment of Markov Random
Fields},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {173--174},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_13},
doi = {10.1007/978-3-319-05269-4\_13},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaWWX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MaWWX14,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
title = {MRFalign: Protein Homology Detection through Alignment of Markov Random
Fields},
journal = {CoRR},
volume = {abs/1401.2668},
year = {2014},
url = {http://arxiv.org/abs/1401.2668},
eprinttype = {arXiv},
eprint = {1401.2668},
timestamp = {Tue, 29 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/MaWWX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaWZX13,
author = {Jianzhu Ma and
Sheng Wang and
Feng Zhao and
Jinbo Xu},
title = {Protein threading using context-specific alignment potential},
journal = {Bioinform.},
volume = {29},
number = {13},
pages = {257--265},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt210},
doi = {10.1093/BIOINFORMATICS/BTT210},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaWZX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangX13,
author = {Zhiyong Wang and
Jinbo Xu},
title = {Predicting protein contact map using evolutionary and physical constraints
by integer programming},
journal = {Bioinform.},
volume = {29},
number = {13},
pages = {266--273},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt211},
doi = {10.1093/BIOINFORMATICS/BTT211},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/itiis/LiDZLX13,
author = {Rongchun Li and
Yong Dou and
Jie Zhou and
Baofeng Li and
Jinbo Xu},
title = {From WiFi to WiMAX: Efficient GPU-based Parameterized Transceiver
across Different {OFDM} Protocols},
journal = {{KSII} Trans. Internet Inf. Syst.},
volume = {7},
number = {8},
pages = {1911--1932},
year = {2013},
url = {https://doi.org/10.3837/tiis.2013.08.010},
doi = {10.3837/TIIS.2013.08.010},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/itiis/LiDZLX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/taco/LeiDGXZDL13,
author = {Yuanwu Lei and
Yong Dou and
Lei Guo and
Jinbo Xu and
Jie Zhou and
Yazhuo Dong and
Hongjian Li},
title = {{VLIW} coprocessor for {IEEE-754} quadruple-precision elementary functions},
journal = {{ACM} Trans. Archit. Code Optim.},
volume = {10},
number = {3},
pages = {12:1--12:22},
year = {2013},
url = {https://doi.org/10.1145/2512430},
doi = {10.1145/2512430},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/taco/LeiDGXZDL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/Ma0WX13,
author = {Jianzhu Ma and
Jian Peng and
Sheng Wang and
Jinbo Xu},
title = {Estimating the Partition Function of Graphical Models Using Langevin
Importance Sampling},
booktitle = {Proceedings of the Sixteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2013, Scottsdale, AZ, USA,
April 29 - May 1, 2013},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {31},
pages = {433--441},
publisher = {JMLR.org},
year = {2013},
url = {http://proceedings.mlr.press/v31/ma13a.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/conf/aistats/Ma0WX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcc/ZouDWXL13,
author = {Dan Zou and
Yong Dou and
Qiang Wang and
Jinbo Xu and
Baofeng Li},
title = {Direction-Optimizing Breadth-First Search on {CPU-GPU} Heterogeneous
Platforms},
booktitle = {10th {IEEE} International Conference on High Performance Computing
and Communications {\&} 2013 {IEEE} International Conference on
Embedded and Ubiquitous Computing, {HPCC/EUC} 2013, Zhangjiajie, China,
November 13-15, 2013},
pages = {1064--1069},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/HPCC.and.EUC.2013.150},
doi = {10.1109/HPCC.AND.EUC.2013.150},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpcc/ZouDWXL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nccet/LuLPZWXL13,
author = {Pingjing Lu and
Bao Li and
Zhengbin Pang and
Ying Zhang and
Shaogang Wang and
Jinbo Xu and
Yan Liu},
editor = {Weixia Xu and
Liquan Xiao and
Chengyi Zhang and
Jinwen Li and
Liyan Yu},
title = {An Effective Framework of Program Optimization for High Performance
Computing},
booktitle = {Computer Engineering and Technology - 17th {CCF} Conference, {NCCET}
2013, Xining, China, July 20-22, 2013. Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {396},
pages = {153--162},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-41635-4\_16},
doi = {10.1007/978-3-642-41635-4\_16},
timestamp = {Thu, 08 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nccet/LuLPZWXL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nccet/SunWX13,
author = {Caixia Sun and
Yongwen Wang and
Jinbo Xu},
editor = {Weixia Xu and
Liquan Xiao and
Chengyi Zhang and
Jinwen Li and
Liyan Yu},
title = {Achieving Predictable Performance in {SMT} Processors by Instruction
Fetch Policy},
booktitle = {Computer Engineering and Technology - 17th {CCF} Conference, {NCCET}
2013, Xining, China, July 20-22, 2013. Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {396},
pages = {186--197},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-41635-4\_20},
doi = {10.1007/978-3-642-41635-4\_20},
timestamp = {Wed, 27 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nccet/SunWX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangX13,
author = {Zhiyong Wang and
Jinbo Xu},
title = {Predicting protein contact map using evolutionary and physical constraints
by integer programming (extended version)},
journal = {CoRR},
volume = {abs/1308.1975},
year = {2013},
url = {http://arxiv.org/abs/1308.1975},
eprinttype = {arXiv},
eprint = {1308.1975},
timestamp = {Tue, 29 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/WangX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MaWX13a,
author = {Jianzhu Ma and
Sheng Wang and
Jinbo Xu},
title = {Protein contact prediction by joint evolutionary coupling analysis
across multiple families},
journal = {CoRR},
volume = {abs/1312.2988},
year = {2013},
url = {http://arxiv.org/abs/1312.2988},
eprinttype = {arXiv},
eprint = {1312.2988},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MaWX13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaPWX12,
author = {Jianzhu Ma and
Jian Peng and
Sheng Wang and
Jinbo Xu},
title = {A conditional neural fields model for protein threading},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {59--66},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts213},
doi = {10.1093/BIOINFORMATICS/BTS213},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaPWX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/ChenSXWMLX12,
author = {Xiaohui Chen and
Xinghua Shi and
Xing Xu and
Zhiyong Wang and
Ryan Mills and
Charles Lee and
Jinbo Xu},
editor = {Neil D. Lawrence and
Mark A. Girolami},
title = {A Two-Graph Guided Multi-task Lasso Approach for eQTL Mapping},
booktitle = {Proceedings of the Fifteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2012, La Palma, Canary Islands,
Spain, April 21-23, 2012},
series = {{JMLR} Proceedings},
volume = {22},
pages = {208--217},
publisher = {JMLR.org},
year = {2012},
url = {http://proceedings.mlr.press/v22/chen12b.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/ChenSXWMLX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/PengHSX12,
author = {Jian Peng and
Tamir Hazan and
Nathan Srebro and
Jinbo Xu},
editor = {Neil D. Lawrence and
Mark A. Girolami},
title = {Approximate Inference by Intersecting Semidefinite Bound and Local
Polytope},
booktitle = {Proceedings of the Fifteenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2012, La Palma, Canary Islands,
Spain, April 21-23, 2012},
series = {{JMLR} Proceedings},
volume = {22},
pages = {868--876},
publisher = {JMLR.org},
year = {2012},
url = {http://proceedings.mlr.press/v22/peng12.html},
timestamp = {Wed, 29 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/PengHSX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangX11,
author = {Zhiyong Wang and
Jinbo Xu},
title = {A conditional random fields method for {RNA} sequence-structure relationship
modeling and conformation sampling},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {102--110},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr232},
doi = {10.1093/BIOINFORMATICS/BTR232},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangPX11,
author = {Sheng Wang and
Jian Peng and
Jinbo Xu},
title = {Alignment of distantly related protein structures: algorithm, bound
and implications to homology modeling},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2537--2545},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr432},
doi = {10.1093/BIOINFORMATICS/BTR432},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangPX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiBXL11,
author = {Shuai Cheng Li and
Dongbo Bu and
Jinbo Xu and
Ming Li},
title = {Finding Nearly Optimal {GDT} Scores},
journal = {J. Comput. Biol.},
volume = {18},
number = {5},
pages = {693--704},
year = {2011},
url = {https://doi.org/10.1089/cmb.2010.0123},
doi = {10.1089/CMB.2010.0123},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiBXL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcc/XuXP11,
author = {Weixia Xu and
Jinbo Xu and
Zhengbin Pang},
editor = {Parimala Thulasiraman and
Laurence Tianruo Yang and
Qiwen Pan and
Xingang Liu and
Yaw{-}Chung Chen and
Yo{-}Ping Huang and
Lin{-}Huang Chang and
Che{-}Lun Hung and
Che{-}Rung Lee and
Justin Y. Shi and
Ying Zhang},
title = {A Parallel Processing Scheme for Large-Size Sliding-Window Applications},
booktitle = {13th {IEEE} International Conference on High Performance Computing
{\&} Communication, {HPCC} 2011, Banff, Alberta, Canada, September
2-4, 2011},
pages = {35--39},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/HPCC.2011.15},
doi = {10.1109/HPCC.2011.15},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpcc/XuXP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengX10,
author = {Jian Peng and
Jinbo Xu},
title = {Low-homology protein threading},
journal = {Bioinform.},
volume = {26},
number = {12},
pages = {294--300},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq192},
doi = {10.1093/BIOINFORMATICS/BTQ192},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoPX10,
author = {Feng Zhao and
Jian Peng and
Jinbo Xu},
title = {Fragment-free approach to protein folding using conditional neural
fields},
journal = {Bioinform.},
volume = {26},
number = {12},
pages = {310--317},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq193},
doi = {10.1093/BIOINFORMATICS/BTQ193},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoPX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhaoPDFSX10,
author = {Feng Zhao and
Jian Peng and
Joe DeBartolo and
Karl F. Freed and
Tobin R. Sosnick and
Jinbo Xu},
title = {A Probabilistic and Continuous Model of Protein Conformational Space
for Template-Free Modeling},
journal = {J. Comput. Biol.},
volume = {17},
number = {6},
pages = {783--798},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0235},
doi = {10.1089/CMB.2009.0235},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhaoPDFSX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SinghPXHB10,
author = {Rohit Singh and
Daniel Park and
Jinbo Xu and
Raghavendra Hosur and
Bonnie Berger},
title = {Struct2Net: a web service to predict protein-protein interactions
using a structure-based approach},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {508--515},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq481},
doi = {10.1093/NAR/GKQ481},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SinghPXHB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/WangZPX10,
author = {Zhiyong Wang and
Feng Zhao and
Jian Peng and
Jinbo Xu},
editor = {Taesung Park and
Stephen Kwok{-}Wing Tsui and
Luonan Chen and
Michael K. Ng and
Limsoon Wong and
Xiaohua Hu},
title = {Protein 8-class secondary structure prediction using Conditional Neural
Fields},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
pages = {109--114},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBM.2010.5706547},
doi = {10.1109/BIBM.2010.5706547},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/WangZPX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejasp/XuDP09,
author = {Jinbo Xu and
Yong Dou and
Zhengbin Pang},
title = {A Reconfigurable Architecture for Rotation Invariant Multi-View Face
Detection Based on a Novel Two-Stage Boosting Method},
journal = {{EURASIP} J. Adv. Signal Process.},
volume = {2009},
year = {2009},
url = {https://doi.org/10.1155/2009/917354},
doi = {10.1155/2009/917354},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ejasp/XuDP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GaoXLL09,
author = {Xin Gao and
Jinbo Xu and
Shuai Cheng Li and
Ming Li},
title = {Predicting Local Quality of a Sequence-Structure Alignment},
journal = {J. Bioinform. Comput. Biol.},
volume = {7},
number = {5},
pages = {789--810},
year = {2009},
url = {https://doi.org/10.1142/S0219720009004345},
doi = {10.1142/S0219720009004345},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/GaoXLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BuLLQX09,
author = {Dongbo Bu and
Ming Li and
Shuai Cheng Li and
Jianbo Qian and
Jinbo Xu},
title = {Finding compact structural motifs},
journal = {Theor. Comput. Sci.},
volume = {410},
number = {30-32},
pages = {2834--2839},
year = {2009},
url = {https://doi.org/10.1016/j.tcs.2009.03.023},
doi = {10.1016/J.TCS.2009.03.023},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BuLLQX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/appt/XuDTW09,
author = {Jinbo Xu and
Yong Dou and
Yuxing Tang and
Xiaodong Wang},
editor = {Yong Dou and
Ralf Gruber and
Josef M. Joller},
title = {Implementation of Rotation Invariant Multi-View Face Detection on
{FPGA}},
booktitle = {Advanced Parallel Processing Technologies, 8th International Symposium,
{APPT} 2009, Rapperswil, Switzerland, August 24-25, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5737},
pages = {82--94},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03644-6\_7},
doi = {10.1007/978-3-642-03644-6\_7},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/appt/XuDTW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fpl/DouZCLX09,
author = {Yong Dou and
Jie Zhou and
Xiaoyang Chen and
Yuanwu Lei and
Jinbo Xu},
editor = {Martin Danek and
Jiri Kadlec and
Brent E. Nelson},
title = {{FPGA} accelerating three {QR} decomposition algorithms in the unified
pipelined framework},
booktitle = {19th International Conference on Field Programmable Logic and Applications,
{FPL} 2009, August 31 - September 2, 2009, Prague, Czech Republic},
pages = {410--416},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/FPL.2009.5272252},
doi = {10.1109/FPL.2009.5272252},
timestamp = {Wed, 16 Oct 2019 14:14:53 +0200},
biburl = {https://dblp.org/rec/conf/fpl/DouZCLX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/PengBX09,
author = {Jian Peng and
Liefeng Bo and
Jinbo Xu},
editor = {Yoshua Bengio and
Dale Schuurmans and
John D. Lafferty and
Christopher K. I. Williams and
Aron Culotta},
title = {Conditional Neural Fields},
booktitle = {Advances in Neural Information Processing Systems 22: 23rd Annual
Conference on Neural Information Processing Systems 2009. Proceedings
of a meeting held 7-10 December 2009, Vancouver, British Columbia,
Canada},
pages = {1419--1427},
publisher = {Curran Associates, Inc.},
year = {2009},
url = {https://proceedings.neurips.cc/paper/2009/hash/e820a45f1dfc7b95282d10b6087e11c0-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/PengBX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengX09,
author = {Jian Peng and
Jinbo Xu},
editor = {Serafim Batzoglou},
title = {Boosting Protein Threading Accuracy},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {31--45},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_3},
doi = {10.1007/978-3-642-02008-7\_3},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PengX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhaoPDFSX09,
author = {Feng Zhao and
Jian Peng and
Joe DeBartolo and
Karl F. Freed and
Tobin R. Sosnick and
Jinbo Xu},
editor = {Serafim Batzoglou},
title = {A Probabilistic Graphical Model for Ab Initio Folding},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {59--73},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_5},
doi = {10.1007/978-3-642-02008-7\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhaoPDFSX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pnas/0001XB08,
author = {Rohit Singh and
Jinbo Xu and
Bonnie Berger},
title = {Global alignment of multiple protein interaction networks with application
to functional orthology detection},
journal = {Proc. Natl. Acad. Sci. {USA}},
volume = {105},
number = {35},
pages = {12763--12768},
year = {2008},
url = {https://doi.org/10.1073/pnas.0806627105},
doi = {10.1073/PNAS.0806627105},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pnas/0001XB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apccas/XuDZ08,
author = {Jinbo Xu and
Yong Dou and
Jie Zhou},
title = {Multi-access memory architecture for image applications with multiple
interested regions},
booktitle = {{IEEE} Asia Pacific Conference on Circuits and Systems, {APCCAS} 2008,
Macao, China, November 30 2008 - December 3, 2008},
pages = {1576--1579},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/APCCAS.2008.4746335},
doi = {10.1109/APCCAS.2008.4746335},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/apccas/XuDZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/arc/XiaDX08,
author = {Fei Xia and
Yong Dou and
Jinbo Xu},
editor = {Roger F. Woods and
Katherine Compton and
Christos{-}Savvas Bouganis and
Pedro C. Diniz},
title = {Hardware {BLAST} Algorithms with Multi-seeds Detection and Parallel
Extension},
booktitle = {Reconfigurable Computing: Architectures, Tools and Applications, 4th
International Workshop, {ARC} 2008, London, UK, March 26-28, 2008.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4943},
pages = {39--50},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78610-8\_7},
doi = {10.1007/978-3-540-78610-8\_7},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/arc/XiaDX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/LiBXL08,
author = {Shuai Cheng Li and
Dongbo Bu and
Jinbo Xu and
Ming Li},
editor = {Paolo Ferragina and
Gad M. Landau},
title = {Finding Largest Well-Predicted Subset of Protein Structure Models},
booktitle = {Combinatorial Pattern Matching, 19th Annual Symposium, {CPM} 2008,
Pisa, Italy, June 18-20, 2008, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5029},
pages = {44--55},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-69068-9\_7},
doi = {10.1007/978-3-540-69068-9\_7},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cpm/LiBXL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcc/ZhouDLXD08,
author = {Jie Zhou and
Yong Dou and
Yuanwu Lei and
Jinbo Xu and
Yazhuo Dong},
title = {Double Precision Hybrid-Mode Floating-Point {FPGA} {CORDIC} Co-processor},
booktitle = {10th {IEEE} International Conference on High Performance Computing
and Communications, {HPCC} 2008, 25-27 Sept. 2008, Dalian, China},
pages = {182--189},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/HPCC.2008.14},
doi = {10.1109/HPCC.2008.14},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/hpcc/ZhouDLXD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LiBGXL08,
author = {Shuai Cheng Li and
Dongbo Bu and
Xin Gao and
Jinbo Xu and
Ming Li},
title = {Designing succinct structural alphabets},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {182--189},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn165},
doi = {10.1093/BIOINFORMATICS/BTN165},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/LiBGXL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwnas/XuDZ08,
author = {Jinbo Xu and
Yong Dou and
Jie Zhou},
title = {Rectangularly Multi-Module Memory System with Table-Based Dynamic
Addressing Scheme},
booktitle = {Proceedings of The 2008 {IEEE} International Conference on Networking,
Architecture, and Storage, {NAS} 2008, June 12-14, 2008, Chongqing,
China},
pages = {334--341},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/NAS.2008.42},
doi = {10.1109/NAS.2008.42},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwnas/XuDZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/SinghXB08,
author = {Rohit Singh and
Jinbo Xu and
Bonnie Berger},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Global Alignment of Multiple Protein Interaction Networks},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {303--314},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/singh.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/SinghXB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangGXL08,
author = {Jing Zhang and
Xin Gao and
Jinbo Xu and
Ming Li},
editor = {Martin Vingron and
Limsoon Wong},
title = {Rapid and Accurate Protein Side Chain Prediction with Local Backbone
Information},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {285--299},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_25},
doi = {10.1007/978-3-540-78839-3\_25},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangGXL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/BergerSX08,
author = {Bonnie Berger and
Rohit Singh and
Jinbo Xu},
editor = {Shang{-}Hua Teng},
title = {Graph algorithms for biological systems analysis},
booktitle = {Proceedings of the Nineteenth Annual {ACM-SIAM} Symposium on Discrete
Algorithms, {SODA} 2008, San Francisco, California, USA, January 20-22,
2008},
pages = {142--151},
publisher = {{SIAM}},
year = {2008},
url = {http://dl.acm.org/citation.cfm?id=1347082.1347098},
timestamp = {Fri, 07 Dec 2012 17:02:08 +0100},
biburl = {https://dblp.org/rec/conf/soda/BergerSX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuJB07,
author = {Jinbo Xu and
Feng Jiao and
Bonnie Berger},
title = {A Parameterized Algorithm for Protein Structure Alignment},
journal = {J. Comput. Biol.},
volume = {14},
number = {5},
pages = {564--577},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.R003},
doi = {10.1089/CMB.2007.R003},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuJB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aPcsac/DouX07,
author = {Yong Dou and
Jinbo Xu},
editor = {Lynn Choi and
Yunheung Paek and
Sangyeun Cho},
title = {FPGA-Accelerated Active Shape Model for Real-Time People Tracking},
booktitle = {Advances in Computer Systems Architecture, 12th Asia-Pacific Conference,
{ACSAC} 2007, Seoul, Korea, August 23-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4697},
pages = {268--279},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74309-5\_26},
doi = {10.1007/978-3-540-74309-5\_26},
timestamp = {Tue, 14 May 2019 10:00:42 +0200},
biburl = {https://dblp.org/rec/conf/aPcsac/DouX07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/Xu07,
author = {Jinbo Xu},
title = {Solving the contact map overlap problem via tree decomposition and
a DEE-like pruning strategy},
booktitle = {46th {IEEE} Conference on Decision and Control, {CDC} 2007, New Orleans,
LA, USA, December 12-14, 2007},
pages = {4531--4538},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/CDC.2007.4434352},
doi = {10.1109/CDC.2007.4434352},
timestamp = {Fri, 04 Mar 2022 13:27:03 +0100},
biburl = {https://dblp.org/rec/conf/cdc/Xu07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/QianLBLX07,
author = {Jianbo Qian and
Shuai Cheng Li and
Dongbo Bu and
Ming Li and
Jinbo Xu},
editor = {Bin Ma and
Kaizhong Zhang},
title = {Finding Compact Structural Motifs},
booktitle = {Combinatorial Pattern Matching, 18th Annual Symposium, {CPM} 2007,
London, Canada, July 9-11, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4580},
pages = {142--149},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73437-6\_16},
doi = {10.1007/978-3-540-73437-6\_16},
timestamp = {Mon, 13 Mar 2023 16:58:28 +0100},
biburl = {https://dblp.org/rec/conf/cpm/QianLBLX07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dsd/XuDLZD07,
author = {Jinbo Xu and
Yong Dou and
Junfeng Li and
Xingming Zhou and
Qiang Dou},
title = {{FPGA} Accelerating Algorithms of Active Shape Model in People Tracking
Applications},
booktitle = {Tenth Euromicro Conference on Digital System Design: Architectures,
Methods and Tools {(DSD} 2007), 29-31 August 2007, L{\"{u}}beck,
Germany},
pages = {432--435},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/DSD.2007.4341504},
doi = {10.1109/DSD.2007.4341504},
timestamp = {Wed, 16 Oct 2019 14:14:57 +0200},
biburl = {https://dblp.org/rec/conf/dsd/XuDLZD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SinghXB07,
author = {Rohit Singh and
Jinbo Xu and
Bonnie Berger},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Pairwise Global Alignment of Protein Interaction Networks by Matching
Neighborhood Topology},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {16--31},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_2},
doi = {10.1007/978-3-540-71681-5\_2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SinghXB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jacm/XuB06,
author = {Jinbo Xu and
Bonnie Berger},
title = {Fast and accurate algorithms for protein side-chain packing},
journal = {J. {ACM}},
volume = {53},
number = {4},
pages = {533--557},
year = {2006},
url = {https://doi.org/10.1145/1162349.1162350},
doi = {10.1145/1162349.1162350},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jacm/XuB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuBLM06,
author = {Jinbo Xu and
Daniel G. Brown and
Ming Li and
Bin Ma},
title = {Optimizing Multiple Spaced Seeds for Homology Search},
journal = {J. Comput. Biol.},
volume = {13},
number = {7},
pages = {1355--1368},
year = {2006},
url = {https://doi.org/10.1089/cmb.2006.13.1355},
doi = {10.1089/CMB.2006.13.1355},
timestamp = {Mon, 13 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuBLM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fpt/XuD06,
author = {Jinbo Xu and
Yong Dou},
editor = {George A. Constantinides and
Wai{-}Kei Mak and
Phaophak Sirisuk and
Theerayod Wiangtong},
title = {Robust and real-time automatic target recognition using partial hausdorff
distance measure on reconfigurable hardware},
booktitle = {2006 {IEEE} International Conference on Field Programmable Technology,
{FPT} 2006, Bangkok, Thailand, December 13-15, 2006},
pages = {25--32},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/FPT.2006.270387},
doi = {10.1109/FPT.2006.270387},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/fpt/XuD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/SinghXB06,
author = {Rohit Singh and
Jinbo Xu and
Bonnie Berger},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Struct2Net: Integrating Structure into Protein-Protein Interaction
Prediction},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {403--414},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/singh.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/SinghXB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuJB06,
author = {Jinbo Xu and
Feng Jiao and
Bonnie Berger},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Parameterized Algorithm for Protein Structure Alignment},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {488--499},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_41},
doi = {10.1007/11732990\_41},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuJB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Xu05,
author = {Jinbo Xu},
title = {Fold Recognition by Predicted Alignment Accuracy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {2},
number = {2},
pages = {157--165},
year = {2005},
url = {https://doi.org/10.1109/TCBB.2005.24},
doi = {10.1109/TCBB.2005.24},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Xu05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/XuYL05,
author = {Jinbo Xu and
Libo Yu and
Ming Li},
editor = {Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {Consensus fold recognition by predicted model quality},
booktitle = {Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January
2005, Singapore},
pages = {73--83},
publisher = {Imperial College Press, London},
year = {2005},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2005/camera-ready/236.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/XuYL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/XuJB05,
author = {Jinbo Xu and
Feng Jiao and
Bonnie Berger},
title = {A Tree-Decomposition Approach to Protein Structure Prediction},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference, {CSB} 2005, Stanford, CA, USA, August 8-11,
2005},
pages = {247--256},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSB.2005.9},
doi = {10.1109/CSB.2005.9},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/XuJB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/TangXL05,
author = {Thomas Tang and
Jinbo Xu and
Ming Li},
editor = {Russ B. Altman and
Tiffany A. Jung and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Discovering Sequence-Structure Motifs from Protein Segments and Two
Applications},
booktitle = {Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA,
4-8 January 2005},
publisher = {World Scientific},
year = {2005},
url = {http://psb.stanford.edu/psb-online/proceedings/psb05/tang.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/TangXL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Xu05,
author = {Jinbo Xu},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Rapid Protein Side-Chain Packing via Tree Decomposition},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {423--439},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_32},
doi = {10.1007/11415770\_32},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Xu05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jco/XuLX04,
author = {Jinbo Xu and
Ming Li and
Ying Xu},
title = {Protein Threading by Linear Programming: Theoretical Analysis and
Computational Results},
journal = {J. Comb. Optim.},
volume = {8},
number = {4},
pages = {403--418},
year = {2004},
url = {https://doi.org/10.1007/s10878-004-4834-x},
doi = {10.1007/S10878-004-4834-X},
timestamp = {Tue, 07 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jco/XuLX04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/XuBLM04,
author = {Jinbo Xu and
Daniel G. Brown and
Ming Li and
Bin Ma},
editor = {S{\"{u}}leyman Cenk Sahinalp and
S. Muthukrishnan and
Ugur Dogrus{\"{o}}z},
title = {Optimizing Multiple Spaced Seeds for Homology Search},
booktitle = {Combinatorial Pattern Matching, 15th Annual Symposium, {CPM} 2004,
Istanbul,Turkey, July 5-7, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3109},
pages = {47--58},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-27801-6\_4},
doi = {10.1007/978-3-540-27801-6\_4},
timestamp = {Mon, 13 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cpm/XuBLM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/XuLKX03,
author = {Jinbo Xu and
Ming Li and
Dongsup Kim and
Ying Xu},
title = {Raptor: Optimal Protein Threading by Linear Programming},
journal = {J. Bioinform. Comput. Biol.},
volume = {1},
number = {1},
pages = {95--118},
year = {2003},
url = {https://doi.org/10.1142/S0219720003000186},
doi = {10.1142/S0219720003000186},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/XuLKX03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/ChenJLWXXX03,
author = {Zhi{-}Zhong Chen and
Tao Jiang and
Guo{-}Hui Lin and
Jianjun Wen and
Dong Xu and
Jinbo Xu and
Ying Xu},
title = {Approximation algorithms for {NMR} spectral peak assignment},
journal = {Theor. Comput. Sci.},
volume = {299},
number = {1-3},
pages = {211--229},
year = {2003},
url = {https://doi.org/10.1016/S0304-3975(02)00086-5},
doi = {10.1016/S0304-3975(02)00086-5},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/ChenJLWXXX03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/XuLLKX03,
author = {Jinbo Xu and
Ming Li and
Guo{-}Hui Lin and
Dongsup Kim and
Ying Xu},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Protein Threading by Linear Programming},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
pages = {264--275},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/xu.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/XuLLKX03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Xu03,
author = {Jinbo Xu},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Speedup {LP} Approach to Protein Threading via Graph Reduction},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {374--388},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_27},
doi = {10.1007/978-3-540-39763-2\_27},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Xu03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2024-05-08 23:55 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
