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ORCIDBibTeX records: Junfeng Xia
@article{DBLP:journals/tim/ZhangZXZHHL24,
author = {Senhua Zhang and
Jianting Zhou and
Junfeng Xia and
Hong Zhang and
Zhenfeng He and
Kemeng Hu and
Leng Liao},
title = {Evaluation of Time-Varying Stress in Prestressed Tendons Based on
the Resonance-Enhanced Magnetoelastic Method},
journal = {{IEEE} Trans. Instrum. Meas.},
volume = {73},
pages = {1--10},
year = {2024},
url = {https://doi.org/10.1109/TIM.2024.3375955},
doi = {10.1109/TIM.2024.3375955},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tim/ZhangZXZHHL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/ChengBSLCRXL24,
author = {Na Cheng and
Chuanmei Bi and
Yong Shi and
Mengya Liu and
Anqi Cao and
Mengkun Ren and
Junfeng Xia and
Zhen Liang},
title = {Effect Predictor of Driver Synonymous Mutations Based on Multi-Feature
Fusion and Iterative Feature Representation Learning},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {28},
number = {2},
pages = {1144--1151},
year = {2024},
url = {https://doi.org/10.1109/JBHI.2023.3343075},
doi = {10.1109/JBHI.2023.3343075},
timestamp = {Sat, 23 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/ChengBSLCRXL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangXWSZ23,
author = {Jing Wang and
Junfeng Xia and
Haiyun Wang and
Yansen Su and
Chun{-}Hou Zheng},
title = {scDCCA: deep contrastive clustering for single-cell RNA-seq data based
on auto-encoder network},
journal = {Briefings Bioinform.},
volume = {24},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac625},
doi = {10.1093/BIB/BBAC625},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangXWSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZYZYXZ23,
author = {Lihua Wang and
Tao Zhang and
Lihong Yu and
Chun{-}Hou Zheng and
Wenguang Yin and
Junfeng Xia and
Tiejun Zhang},
title = {Deleterious synonymous mutation identification based on selective
ensemble strategy},
journal = {Briefings Bioinform.},
volume = {24},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac598},
doi = {10.1093/BIB/BBAC598},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangZYZYXZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuLLXWZXBX23,
author = {Jiawei Wu and
Qingrui Liu and
Min Li and
Jiliang Xu and
Chen Wang and
Junyin Zhang and
Minfeng Xiao and
Yannan Bin and
Junfeng Xia},
title = {PhaGAA: an integrated web server platform for phage genome annotation
and analysis},
journal = {Bioinform.},
volume = {39},
number = {3},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad120},
doi = {10.1093/BIOINFORMATICS/BTAD120},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuLLXWZXBX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangSLZXC23,
author = {Huadong Wang and
Jianhui Sun and
Mengya Liu and
Chun{-}Hou Zheng and
Junfeng Xia and
Na Cheng},
title = {frDSM: An Ensemble Predictor With Effective Feature Representation
for Deleterious Synonymous Mutation in Human Genome},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {371--377},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3167468},
doi = {10.1109/TCBB.2022.3167468},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangSLZXC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoTXZW23,
author = {Zhen Gao and
Jin Tang and
Junfeng Xia and
Chun{-}Hou Zheng and
Pi{-}Jing Wei},
title = {{CNNGRN:} {A} Convolutional Neural Network-Based Method for Gene Regulatory
Network Inference From Bulk Time-Series Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2853--2861},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3282212},
doi = {10.1109/TCBB.2023.3282212},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoTXZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangDYZBXX22,
author = {Wending Tang and
Ruyu Dai and
Wenhui Yan and
Wei Zhang and
Yannan Bin and
En{-}Hua Xia and
Junfeng Xia},
title = {Identifying multi-functional bioactive peptide functions using multi-label
deep learning},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab414},
doi = {10.1093/BIB/BBAB414},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TangDYZBXX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangXTLSZ22,
author = {Jing Wang and
Junfeng Xia and
Dayu Tan and
Rongxin Lin and
Yansen Su and
Chun{-}Hou Zheng},
title = {scHFC: a hybrid fuzzy clustering method for single-cell RNA-seq data
optimized by natural computation},
journal = {Briefings Bioinform.},
volume = {23},
number = {2},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab588},
doi = {10.1093/BIB/BBAB588},
timestamp = {Fri, 01 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangXTLSZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiMYWKZLX22,
author = {Xiaoyan Li and
Shunshuai Ma and
Wenhui Yan and
Yong Wu and
Hui Kong and
Mingshan Zhang and
Xiongjian Luo and
Junfeng Xia},
title = {dbBIP: a comprehensive bipolar disorder database for genetic research},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baac049},
doi = {10.1093/DATABASE/BAAC049},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/LiMYWKZLX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/YanTWBX22,
author = {Wenhui Yan and
Wending Tang and
Lihua Wang and
Yannan Bin and
Junfeng Xia},
title = {PrMFTP: Multi-functional therapeutic peptides prediction based on
multi-head self-attention mechanism and class weight optimization},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {9},
pages = {1010511},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010511},
doi = {10.1371/JOURNAL.PCBI.1010511},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/YanTWBX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuCXNZS22,
author = {Qing{-}Wen Wu and
Rui{-}Fen Cao and
Jun{-}Feng Xia and
Jian{-}Cheng Ni and
Chunhou Zheng and
Yan{-}Sen Su},
title = {Extra Trees Method for Predicting LncRNA-Disease Association Based
On Multi-Layer Graph Embedding Aggregation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3171--3178},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3113122},
doi = {10.1109/TCBB.2021.3113122},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuCXNZS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsv/ChengWTZGZX22,
author = {Na Cheng and
Huadong Wang and
Xi Tang and
Tao Zhang and
Jie Gui and
Chun{-}Hou Zheng and
Junfeng Xia},
title = {An Ensemble Framework for Improving the Prediction of Deleterious
Synonymous Mutation},
journal = {{IEEE} Trans. Circuits Syst. Video Technol.},
volume = {32},
number = {5},
pages = {2603--2611},
year = {2022},
url = {https://doi.org/10.1109/TCSVT.2021.3063145},
doi = {10.1109/TCSVT.2021.3063145},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsv/ChengWTZGZX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/WangZCWXXB22,
author = {Chen Wang and
Junyin Zhang and
Li Cheng and
Jiawei Wu and
Minfeng Xiao and
Junfeng Xia and
Yannan Bin},
title = {DPProm: {A} Two-Layer Predictor for Identifying Promoters and Their
Types on Phage Genome Using Deep Learning},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {26},
number = {10},
pages = {5258--5266},
year = {2022},
url = {https://doi.org/10.1109/JBHI.2022.3193224},
doi = {10.1109/JBHI.2022.3193224},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/WangZCWXXB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/DongLYHWXB22,
author = {Chao Dong and
Jie Liu and
Wenhui Yan and
Mengmeng Han and
Lijun Wu and
Junfeng Xia and
Yannan Bin},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Junfeng Jing and
Prashan Premaratne and
Vitoantonio Bevilacqua and
Abir Hussain},
title = {An Ensemble Framework Integrating Whole Slide Pathological Images
and miRNA Data to Predict Radiosensitivity of Breast Cancer Patients},
booktitle = {Intelligent Computing Theories and Application - 18th International
Conference, {ICIC} 2022, Xi'an, China, August 7-11, 2022, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {13394},
pages = {757--766},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-13829-4\_68},
doi = {10.1007/978-3-031-13829-4\_68},
timestamp = {Tue, 16 Aug 2022 16:15:39 +0200},
biburl = {https://dblp.org/rec/conf/icic/DongLYHWXB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YueCX21,
author = {Zhenyu Yue and
Xinlu Chu and
Junfeng Xia},
title = {PredCID: prediction of driver frameshift indels in human cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa119},
doi = {10.1093/BIB/BBAA119},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YueCX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangZCWZXZ21,
author = {Xi Tang and
Tao Zhang and
Na Cheng and
Huadong Wang and
Chun{-}Hou Zheng and
Junfeng Xia and
Tiejun Zhang},
title = {usDSM: a novel method for deleterious synonymous mutation prediction
using undersampling scheme},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab123},
doi = {10.1093/BIB/BBAB123},
timestamp = {Tue, 10 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TangZCWZXZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WuXNZ21,
author = {Qing{-}Wen Wu and
Jun{-}Feng Xia and
Jian{-}Cheng Ni and
Chun{-}Hou Zheng},
title = {{GAERF:} predicting lncRNA-disease associations by graph auto-encoder
and random forest},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa391},
doi = {10.1093/BIB/BBAA391},
timestamp = {Tue, 14 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WuXNZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangZCWZXZ21a,
author = {Xi Tang and
Tao Zhang and
Na Cheng and
Huadong Wang and
Chun{-}Hou Zheng and
Junfeng Xia and
Tiejun Zhang},
title = {Erratum: usDSM: a novel method for deleterious synonymous mutation
prediction using undersampling scheme},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab247},
doi = {10.1093/BIB/BBAB247},
timestamp = {Tue, 10 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TangZCWZXZ21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZuoCWXZ21,
author = {Zong{-}Lan Zuo and
Rui{-}Fen Cao and
Pi{-}Jing Wei and
Jun{-}Feng Xia and
Chun{-}Hou Zheng},
title = {Double matrix completion for circRNA-disease association prediction},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {307},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04231-3},
doi = {10.1186/S12859-021-04231-3},
timestamp = {Fri, 11 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZuoCWXZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangWZLLLBX21,
author = {Sijia Zhang and
Lihua Wang and
Le Zhao and
Menglu Li and
Mengya Liu and
Ke Li and
Yannan Bin and
Junfeng Xia},
title = {An improved DNA-binding hot spot residues prediction method by exploring
interfacial neighbor properties},
journal = {{BMC} Bioinform.},
volume = {22-S},
number = {3},
pages = {253},
year = {2021},
url = {https://doi.org/10.1186/s12859-020-03871-1},
doi = {10.1186/S12859-020-03871-1},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWZLLLBX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangWZXCZ21,
author = {Yun{-}Yun Tang and
Pi{-}Jing Wei and
Jian{-}ping Zhao and
Junfeng Xia and
Rui{-}Fen Cao and
Chun{-}Hou Zheng},
title = {Identification of driver genes based on gene mutational effects and
network centrality},
journal = {{BMC} Bioinform.},
volume = {22-S},
number = {3},
pages = {457},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04377-0},
doi = {10.1186/S12859-021-04377-0},
timestamp = {Mon, 12 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TangWZXCZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/DaiZTWZBSX21,
author = {Ruyu Dai and
Wei Zhang and
Wending Tang and
Evelien Wynendaele and
Qizhi Zhu and
Yannan Bin and
Bart De Spiegeleer and
Junfeng Xia},
title = {BBPpred: Sequence-Based Prediction of Blood-Brain Barrier Peptides
with Feature Representation Learning and Logistic Regression},
journal = {J. Chem. Inf. Model.},
volume = {61},
number = {1},
pages = {525--534},
year = {2021},
url = {https://doi.org/10.1021/acs.jcim.0c01115},
doi = {10.1021/ACS.JCIM.0C01115},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/DaiZTWZBSX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWLZLZBSWLSX21,
author = {Menglu Li and
Yanan Wang and
Fuyi Li and
Yun Zhao and
Mengya Liu and
Sijia Zhang and
Yannan Bin and
Alexander Ian Smith and
Geoffrey I. Webb and
Jian Li and
Jiangning Song and
Junfeng Xia},
title = {A Deep Learning-Based Method for Identification of Bacteriophage-Host
Interaction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1801--1810},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3017386},
doi = {10.1109/TCBB.2020.3017386},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWLZLZBSWLSX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YueZX20,
author = {Zhenyu Yue and
Le Zhao and
Junfeng Xia},
title = {dbCPM: a manually curated database for exploring the cancer passenger
mutations},
journal = {Briefings Bioinform.},
volume = {21},
number = {1},
pages = {309--317},
year = {2020},
url = {https://doi.org/10.1093/bib/bby105},
doi = {10.1093/BIB/BBY105},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YueZX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChengLZZYZX20,
author = {Na Cheng and
Menglu Li and
Le Zhao and
Bo Zhang and
Yuhua Yang and
Chun{-}Hou Zheng and
Junfeng Xia},
title = {Comparison and integration of computational methods for deleterious
synonymous mutation prediction},
journal = {Briefings Bioinform.},
volume = {21},
number = {3},
pages = {970--981},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz047},
doi = {10.1093/BIB/BBZ047},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChengLZZYZX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangZZX20,
author = {Sijia Zhang and
Le Zhao and
Chun{-}Hou Zheng and
Junfeng Xia},
title = {A feature-based approach to predict hot spots in protein-DNA binding
interfaces},
journal = {Briefings Bioinform.},
volume = {21},
number = {3},
pages = {1038--1046},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz037},
doi = {10.1093/BIB/BBZ037},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangZZX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZYBX20,
author = {Ke Li and
Sijia Zhang and
Di Yan and
Yannan Bin and
Junfeng Xia},
title = {Prediction of hot spots in protein-DNA binding interfaces based on
supervised isometric feature mapping and extreme gradient boosting},
journal = {{BMC} Bioinform.},
volume = {21-S},
number = {13},
pages = {381},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03683-3},
doi = {10.1186/S12859-020-03683-3},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZYBX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbbb/TangLZX20,
author = {Xi Tang and
Menglu Li and
Wei Zhang and
Junfeng Xia},
title = {Predicting lncRNA-disease Association based on Extreme Gradient Boosting},
booktitle = {{ICBBB} 2020: 10th International Conference on Bioscience, Biochemistry
and Bioinformatics, Kyoto, Japan, January, 2020},
pages = {69--73},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3386052.3386056},
doi = {10.1145/3386052.3386056},
timestamp = {Thu, 16 Nov 2023 10:59:04 +0100},
biburl = {https://dblp.org/rec/conf/icbbb/TangLZX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/ZhangZX19,
author = {Sijia Zhang and
Le Zhao and
Junfeng Xia},
title = {SPHot: Prediction of Hot Spots in Protein-RNA Complexes by Protein
Sequence Information and Ensemble Classifier},
journal = {{IEEE} Access},
volume = {7},
pages = {104941--104946},
year = {2019},
url = {https://doi.org/10.1109/ACCESS.2019.2931552},
doi = {10.1109/ACCESS.2019.2931552},
timestamp = {Wed, 21 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/ZhangZX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/BinZLX19,
author = {Yannan Bin and
Qizhi Zhu and
Menglu Li and
Junfeng Xia},
title = {Comprehensive Analysis of Alzheimer's Disease Biologically Candidate
Causal Genes Revealed by Function Association Study With {GWAS}},
journal = {{IEEE} Access},
volume = {7},
pages = {114236--114245},
year = {2019},
url = {https://doi.org/10.1109/ACCESS.2019.2935515},
doi = {10.1109/ACCESS.2019.2935515},
timestamp = {Thu, 05 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/BinZLX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YueZCYX19,
author = {Zhenyu Yue and
Le Zhao and
Na Cheng and
Hua Yan and
Junfeng Xia},
title = {dbCID: a manually curated resource for exploring the driver indels
in human cancer},
journal = {Briefings Bioinform.},
volume = {20},
number = {5},
pages = {1925--1933},
year = {2019},
url = {https://doi.org/10.1093/bib/bby059},
doi = {10.1093/BIB/BBY059},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YueZCYX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RomanoCDFGRMPRS19,
author = {Paolo Romano and
Arnaud C{\'{e}}ol and
Andreas Dr{\"{a}}ger and
Antonino Fiannaca and
Rosalba Giugno and
Massimo La Rosa and
Luciano Milanesi and
Ulrich Pfeffer and
Riccardo Rizzo and
Soo{-}Yong Shin and
Junfeng Xia and
Alfonso Urso},
title = {The 2017 Network Tools and Applications in Biology {(NETTAB)} workshop:
aims, topics and outcomes},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {4},
pages = {125:1--125:9},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2681-0},
doi = {10.1186/S12859-019-2681-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RomanoCDFGRMPRS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/DingXWWZ19,
author = {Xin Ding and
Jun{-}Feng Xia and
Yutian Wang and
Jing Wang and
Chun{-}Hou Zheng},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Zhi{-}Kai Huang},
title = {Improved Inductive Matrix Completion Method for Predicting MicroRNA-Disease
Associations},
booktitle = {Intelligent Computing Theories and Application - 15th International
Conference, {ICIC} 2019, Nanchang, China, August 3-6, 2019, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11644},
pages = {247--255},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-26969-2\_23},
doi = {10.1007/978-3-030-26969-2\_23},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/DingXWWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/HuiWXWWZ19,
author = {Ying Hui and
Pi{-}Jing Wei and
Jun{-}Feng Xia and
Hong{-}Bo Wang and
Jing Wang and
Chun{-}Hou Zheng},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Zhi{-}Kai Huang},
title = {Discovering Driver Mutation Profiles in Cancer with a Local Centrality
Score},
booktitle = {Intelligent Computing Theories and Application - 15th International
Conference, {ICIC} 2019, Nanchang, China, August 3-6, 2019, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11644},
pages = {272--282},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-26969-2\_26},
doi = {10.1007/978-3-030-26969-2\_26},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/HuiWXWWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/ZhaoZX19,
author = {Le Zhao and
Sijia Zhang and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Vitoantonio Bevilacqua and
Prashan Premaratne},
title = {Sequence-Based Prediction of Hot Spots in Protein-RNA Complexes Using
an Ensemble Approach},
booktitle = {Intelligent Computing Theories and Application - 15th International
Conference, {ICIC} 2019, Nanchang, China, August 3-6, 2019, Proceedings,
Part {I}},
series = {Lecture Notes in Computer Science},
volume = {11643},
pages = {575--582},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-26763-6\_55},
doi = {10.1007/978-3-030-26763-6\_55},
timestamp = {Tue, 30 Jul 2019 13:29:10 +0200},
biburl = {https://dblp.org/rec/conf/icic/ZhaoZX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/ZhaoX19,
author = {Zhongming Zhao and
Junfeng Xia},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Computational Approaches for Modeling Signal Transduction Networks},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
2},
pages = {856--863},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20293-8},
doi = {10.1016/B978-0-12-809633-8.20293-8},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/ZhaoX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WenXCCTWXZ18,
author = {Pengbo Wen and
Junfeng Xia and
Xianbin Cao and
Bin Chen and
Yinping Tao and
Lijun Wu and
An Xu and
Guoping Zhao},
title = {dbCRSR: a manually curated database for regulation of cancer radiosensitivity},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay049},
year = {2018},
url = {https://doi.org/10.1093/database/bay049},
doi = {10.1093/DATABASE/BAY049},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WenXCCTWXZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/BinWZWX18,
author = {Yannan Bin and
Xiaojuan Wang and
Qizhi Zhu and
Pengbo Wen and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Xiaolong Zhang},
title = {Nucleotide-Based Significance of Somatic Synonymous Mutations for
Pan-Cancer},
booktitle = {Intelligent Computing Theories and Application - 14th International
Conference, {ICIC} 2018, Wuhan, China, August 15-18, 2018, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {10955},
pages = {401--406},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-95933-7\_49},
doi = {10.1007/978-3-319-95933-7\_49},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/icic/BinWZWX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/SunYZXBZ18,
author = {Haiyang Sun and
Zhenyu Yue and
Le Zhao and
Junfeng Xia and
Yannan Bin and
Di Zhang},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Xiaolong Zhang},
title = {Computational Prediction of Driver Missense Mutations in Melanoma},
booktitle = {Intelligent Computing Theories and Application - 14th International
Conference, {ICIC} 2018, Wuhan, China, August 15-18, 2018, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {10955},
pages = {438--447},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-95933-7\_53},
doi = {10.1007/978-3-319-95933-7\_53},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/SunYZXBZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/BinSZZX18,
author = {Yannan Bin and
Ling Shu and
Qizhi Zhu and
Huanhuan Zhu and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Xiaolong Zhang},
title = {Further Evidence for Role of Promoter Polymorphisms in {TNF} Gene
in Alzheimer's Disease},
booktitle = {Intelligent Computing Theories and Application - 14th International
Conference, {ICIC} 2018, Wuhan, China, August 15-18, 2018, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {10955},
pages = {448--459},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-95933-7\_54},
doi = {10.1007/978-3-319-95933-7\_54},
timestamp = {Wed, 08 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/BinSZZX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/complexity/WeiZLXZ17,
author = {Pi{-}Jing Wei and
Di Zhang and
Haitao Li and
Junfeng Xia and
Chun{-}Hou Zheng},
title = {DriverFinder: {A} Gene Length-Based Network Method to Identify Cancer
Driver Genes},
journal = {Complex.},
volume = {2017},
pages = {4826206:1--4826206:10},
year = {2017},
url = {https://doi.org/10.1155/2017/4826206},
doi = {10.1155/2017/4826206},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/complexity/WeiZLXZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GeXSZ17,
author = {Shu{-}Guang Ge and
Junfeng Xia and
Wen Sha and
Chun{-}Hou Zheng},
title = {Cancer Subtype Discovery Based on Integrative Model of Multigenomic
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {5},
pages = {1115--1121},
year = {2017},
url = {https://doi.org/10.1109/TCBB.2016.2621769},
doi = {10.1109/TCBB.2016.2621769},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GeXSZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/WangYZZBX17,
author = {Xiaojuan Wang and
Hua Yan and
Di Zhang and
Le Zhao and
Yannan Bin and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Juan Carlos Figueroa{-}Garc{\'{\i}}a},
title = {Investigating Alzheimer's Disease Candidate Genes Based on Combined
Network Using Subnetwork Extraction Algorithms},
booktitle = {Intelligent Computing Theories and Application - 13th International
Conference, {ICIC} 2017, Liverpool, UK, August 7-10, 2017, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {10362},
pages = {559--565},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-63312-1\_49},
doi = {10.1007/978-3-319-63312-1\_49},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/icic/WangYZZBX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenXX16,
author = {Pengbo Wen and
Peng Xiao and
Junfeng Xia},
title = {dbDSM: a manually curated database for deleterious synonymous mutations},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1914--1916},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw086},
doi = {10.1093/BIOINFORMATICS/BTW086},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenXX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShangSLXZZ16,
author = {Junliang Shang and
Yingxia Sun and
Jin{-}Xing Liu and
Junfeng Xia and
Junying Zhang and
Chun{-}Hou Zheng},
title = {{CINOEDV:} a co-information based method for detecting and visualizing
\emph{n}-order epistatic interactions},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {214},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1076-8},
doi = {10.1186/S12859-016-1076-8},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShangSLXZZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeiZXZ16,
author = {Pi{-}Jing Wei and
Di Zhang and
Junfeng Xia and
Chun{-}Hou Zheng},
title = {LNDriver: identifying driver genes by integrating mutation and expression
data based on gene-gene interaction network},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-17}},
pages = {221--230},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1332-y},
doi = {10.1186/S12859-016-1332-Y},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WeiZXZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/ZhengYCX16,
author = {Chun{-}Hou Zheng and
Wu Yang and
Yanwen Chong and
Junfeng Xia},
title = {Identification of mutated driver pathways in cancer using a multi-objective
optimization model},
journal = {Comput. Biol. Medicine},
volume = {72},
pages = {22--29},
year = {2016},
url = {https://doi.org/10.1016/j.compbiomed.2016.03.002},
doi = {10.1016/J.COMPBIOMED.2016.03.002},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/ZhengYCX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenHZGLXW16,
author = {Peng Chen and
ShanShan Hu and
Jun Zhang and
Xin Gao and
Jinyan Li and
Junfeng Xia and
Bing Wang},
title = {A Sequence-Based Dynamic Ensemble Learning System for Protein Ligand-Binding
Site Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {13},
number = {5},
pages = {901--912},
year = {2016},
url = {https://doi.org/10.1109/TCBB.2015.2505286},
doi = {10.1109/TCBB.2015.2505286},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenHZGLXW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/WeiZZX16,
author = {Pi{-}Jing Wei and
Di Zhang and
Chun{-}Hou Zheng and
Junfeng Xia},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {Cancer genes discovery based on integtating transcriptomic data and
the impact of gene length},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {1265--1268},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822700},
doi = {10.1109/BIBM.2016.7822700},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/WeiZZX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/GeXWZ16,
author = {Shu{-}Guang Ge and
Junfeng Xia and
Pi{-}Jing Wei and
Chun{-}Hou Zheng},
editor = {De{-}Shuang Huang and
Kyungsook Han and
Abir Hussain},
title = {Srrr-cluster: Using Sparse Reduced-Rank Regression to Optimize iCluster},
booktitle = {Intelligent Computing Methodologies - 12th International Conference,
{ICIC} 2016, Lanzhou, China, August 2-5, 2016, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {9773},
pages = {99--106},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-42297-8\_10},
doi = {10.1007/978-3-319-42297-8\_10},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/GeXWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZhangZZZX15,
author = {Di Zhang and
Rongrong Zhu and
Hanqian Zhang and
Chun{-}Hou Zheng and
Junfeng Xia},
title = {{MGDB:} a comprehensive database of genes involved in melanoma},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav097},
doi = {10.1093/DATABASE/BAV097},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ZhangZZZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cea/XieZLLHXC15,
author = {Chengjun Xie and
Jie Zhang and
Rui Li and
Jinyan Li and
Peilin Hong and
Junfeng Xia and
Peng Chen},
title = {Automatic classification for field crop insects via multiple-task
sparse representation and multiple-kernel learning},
journal = {Comput. Electron. Agric.},
volume = {119},
pages = {123--132},
year = {2015},
url = {https://doi.org/10.1016/j.compag.2015.10.015},
doi = {10.1016/J.COMPAG.2015.10.015},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cea/XieZLLHXC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/ZhangWZLZX15,
author = {Di Zhang and
Qingbao Wang and
Rongrong Zhu and
Haitao Li and
Chun{-}Hou Zheng and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Abir Jaafar Hussain},
title = {Discovery of Ovarian Cancer Candidate Genes Using Protein Interaction
Information},
booktitle = {Intelligent Computing Theories and Methodologies - 11th International
Conference, {ICIC} 2015, Fuzhou, China, August 20-23, 2015, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9226},
pages = {467--472},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-22186-1\_46},
doi = {10.1007/978-3-319-22186-1\_46},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/ZhangWZLZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/YueCX15,
author = {Zhenyu Yue and
Yan Chen and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Abir Jaafar Hussain},
title = {Prediction of Clinical Drug Response Based on Differential Gene Expression
Levels},
booktitle = {Intelligent Computing Theories and Methodologies - 11th International
Conference, {ICIC} 2015, Fuzhou, China, August 20-23, 2015, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9226},
pages = {480--488},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-22186-1\_48},
doi = {10.1007/978-3-319-22186-1\_48},
timestamp = {Tue, 23 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/YueCX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/YangXZZ15,
author = {Wu Yang and
Junfeng Xia and
Yan Zhang and
Chun{-}Hou Zheng},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Abir Jaafar Hussain},
title = {Multi-objective Optimization Method for Identifying Mutated Driver
Pathways in Cancer},
booktitle = {Intelligent Computing Theories and Methodologies - 11th International
Conference, {ICIC} 2015, Fuzhou, China, August 20-23, 2015, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9226},
pages = {570--576},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-22186-1\_57},
doi = {10.1007/978-3-319-22186-1\_57},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/YangXZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/WeiLWZX15,
author = {Ran Wei and
Haitao Li and
Yanjun Wang and
Chun{-}Hou Zheng and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kyungsook Han},
title = {Identification of Colorectal Cancer Candidate Genes Based on Subnetwork
Extraction Algorithm},
booktitle = {Advanced Intelligent Computing Theories and Applications - 11th International
Conference, {ICIC} 2015, Fuzhou, China, August 20-23, 2015. Proceedings,
Part {III}},
series = {Lecture Notes in Computer Science},
volume = {9227},
pages = {706--712},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-22053-6\_74},
doi = {10.1007/978-3-319-22053-6\_74},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/WeiLWZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/YeXCZZ14,
author = {Fen Ye and
Junfeng Xia and
Yanwen Chong and
Yan Zhang and
Chun{-}Hou Zheng},
editor = {De{-}Shuang Huang and
Kyungsook Han and
M. Michael Gromiha},
title = {Tumor Clustering Using Independent Component Analysis and Adaptive
Affinity Propagation},
booktitle = {Intelligent Computing in Bioinformatics - 10th International Conference,
{ICIC} 2014, Taiyuan, China, August 3-6, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8590},
pages = {34--40},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-09330-7\_5},
doi = {10.1007/978-3-319-09330-7\_5},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/YeXCZZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/ZhangX14,
author = {Di Zhang and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kyungsook Han and
M. Michael Gromiha},
title = {Potential Driver Genes Regulated by OncomiRNA Are Associated with
Druggability in Pan-Negative Melanoma},
booktitle = {Intelligent Computing in Bioinformatics - 10th International Conference,
{ICIC} 2014, Taiyuan, China, August 3-6, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8590},
pages = {315--321},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-09330-7\_38},
doi = {10.1007/978-3-319-09330-7\_38},
timestamp = {Tue, 04 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/ZhangX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/DiWWYX14,
author = {Yun{-}Qiang Di and
Changchang Wang and
Huan Wu and
Xinxin Yu and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kyungsook Han and
M. Michael Gromiha},
title = {Comparative Assessment of Data Sets of Protein Interaction Hot Spots
Used in the Computational Method},
booktitle = {Intelligent Computing in Bioinformatics - 10th International Conference,
{ICIC} 2014, Taiyuan, China, August 3-6, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8590},
pages = {478--486},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-09330-7\_55},
doi = {10.1007/978-3-319-09330-7\_55},
timestamp = {Tue, 23 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/DiWWYX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangXJPZ13,
author = {Qingguo Wang and
Junfeng Xia and
Peilin Jia and
William Pao and
Zhongming Zhao},
title = {Application of next generation sequencing to human gene fusion detection:
computational tools, features and perspectives},
journal = {Briefings Bioinform.},
volume = {14},
number = {4},
pages = {506--519},
year = {2013},
url = {https://doi.org/10.1093/bib/bbs044},
doi = {10.1093/BIB/BBS044},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangXJPZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HarrellXZ13,
author = {Morgan Harrell and
Junfeng Xia and
Zhongming Zhao},
title = {Network analysis of gene fusions in human cancer},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-17}},
pages = {A13},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S17-A13},
doi = {10.1186/1471-2105-14-S17-A13},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HarrellXZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YouLZXW13,
author = {Zhu{-}Hong You and
Ying{-}Ke Lei and
Lin Zhu and
Junfeng Xia and
Bing Wang},
title = {Prediction of protein-protein interactions from amino acid sequences
with ensemble extreme learning machines and principal component analysis},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-8}},
pages = {S10},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S8-S10},
doi = {10.1186/1471-2105-14-S8-S10},
timestamp = {Mon, 30 Mar 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YouLZXW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/YuanSZZX13,
author = {Lin Yuan and
Wen Sha and
Jun Zhang and
Chun{-}Hou Zheng and
Junfeng Xia},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Differential coexpression analysis in gene modules level and its application
to type 2 diabetes},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {193--196},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732487},
doi = {10.1109/BIBM.2013.6732487},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/YuanSZZX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/WuDZX13,
author = {Huan Wu and
Yun{-}Qiang Di and
Chun{-}Hou Zheng and
Junfeng Xia},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Prediction of cytochrome {P450} inhibition using ensemble of extreme
learning machine},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {342--344},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732515},
doi = {10.1109/BIBM.2013.6732515},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/WuDZX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/XiaSJZ11,
author = {Junfeng Xia and
Jingchun Sun and
Peilin Jia and
Zhongming Zhao},
title = {Do cancer proteins really interact strongly in the human protein-protein
interaction network?},
journal = {Comput. Biol. Chem.},
volume = {35},
number = {3},
pages = {121--125},
year = {2011},
url = {https://doi.org/10.1016/j.compbiolchem.2011.04.005},
doi = {10.1016/J.COMPBIOLCHEM.2011.04.005},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/XiaSJZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/ZhaoXTSKCK11,
author = {Zhongming Zhao and
Junfeng Xia and
{\"{O}}znur Tastan and
Irtisha Singh and
Meghana Kshirsagar and
Jaime G. Carbonell and
Judith Klein{-}Seetharaman},
title = {Virus interactions with human signal transduction pathways},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {4},
number = {1},
pages = {83--105},
year = {2011},
url = {https://doi.org/10.1504/IJCBDD.2011.038658},
doi = {10.1504/IJCBDD.2011.038658},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/ZhaoXTSKCK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/SuXZ11,
author = {Zhixi Su and
Junfeng Xia and
Zhongming Zhao},
editor = {De{-}Shuang Huang and
Yong Gan and
Prashan Premaratne and
Kyungsook Han},
title = {Do MicroRNAs Preferentially Target the Genes with Low {DNA} Methylation
Level at the Promoter Region?},
booktitle = {Bio-Inspired Computing and Applications - 7th International Conference
on Intelligent Computing, {ICIC} 2011, Zhengzhou,China, August 11-14.
2011, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6840},
pages = {253--258},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-24553-4\_35},
doi = {10.1007/978-3-642-24553-4\_35},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/icic/SuXZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaZSH10,
author = {Junfeng Xia and
Xing{-}Ming Zhao and
Jiangning Song and
De{-}Shuang Huang},
title = {{APIS:} accurate prediction of hot spots in protein interfaces by
combining protrusion index with solvent accessibility},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {174},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-174},
doi = {10.1186/1471-2105-11-174},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaZSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcsc/WangLXZ10,
author = {Shulin Wang and
Xueling Li and
Junfeng Xia and
Xiao{-}Ping Zhang},
title = {Weighted Neighborhood Classifier for the Classification of Imbalanced
Tumor Dataset},
journal = {J. Circuits Syst. Comput.},
volume = {19},
number = {1},
pages = {259--273},
year = {2010},
url = {https://doi.org/10.1142/S0218126610006232},
doi = {10.1142/S0218126610006232},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcsc/WangLXZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/RenX10,
author = {Xiao{-}Ming Ren and
Jun{-}Feng Xia},
editor = {De{-}Shuang Huang and
Xiang Zhang and
Carlos A. Reyes Garc{\'{\i}}a and
Lei Zhang},
title = {Prediction of Protein-Protein Interaction Sites by Using Autocorrelation
Descriptor and Support Vector Machine},
booktitle = {Advanced Intelligent Computing Theories and Applications. With Aspects
of Artificial Intelligence, 6th International Conference on Intelligent
Computing, {ICIC} 2010, Changsha, China, August 18-21, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6216},
pages = {76--82},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-14932-0\_10},
doi = {10.1007/978-3-642-14932-0\_10},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/icic/RenX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/LeiX09,
author = {Ying{-}Ke Lei and
Junfeng Xia},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Hong{-}Hee Lee and
Hee{-}Jun Kang and
Vitoantonio Bevilacqua},
title = {A New Source and Receiver Localization Method with Erroneous Receiver
Positions},
booktitle = {Emerging Intelligent Computing Technology and Applications. With Aspects
of Artificial Intelligence, 5th International Conference on Intelligent
Computing, {ICIC} 2009, Ulsan, South Korea, September 16-19, 2009,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5755},
pages = {55--63},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04020-7\_7},
doi = {10.1007/978-3-642-04020-7\_7},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/icic/LeiX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/XiaWH07,
author = {Junfeng Xia and
Bing Wang and
De{-}Shuang Huang},
title = {Inferring Strengths of Protein-Protein Interaction Using Artificial
Neural Network},
booktitle = {Proceedings of the International Joint Conference on Neural Networks,
{IJCNN} 2007, Celebrating 20 years of neural networks, Orlando, Florida,
USA, August 12-17, 2007},
pages = {2471--2475},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/IJCNN.2007.4371346},
doi = {10.1109/IJCNN.2007.4371346},
timestamp = {Tue, 26 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcnn/XiaWH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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