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ORCIDBibTeX records: David L. Wild
@article{DBLP:journals/adac/CunninghamGW20,
author = {Nathan Cunningham and
Jim E. Griffin and
David L. Wild},
title = {ParticleMDI: particle Monte Carlo methods for the cluster analysis
of multiple datasets with applications to cancer subtype identification},
journal = {Adv. Data Anal. Classif.},
volume = {14},
number = {2},
pages = {463--484},
year = {2020},
url = {https://doi.org/10.1007/s11634-020-00401-y},
doi = {10.1007/S11634-020-00401-Y},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/adac/CunninghamGW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PolanskiGMBODW18,
author = {Krzysztof Polanski and
Bo Gao and
Sam A. Mason and
Paul Brown and
Sascha Ott and
Katherine J. Denby and
David L. Wild},
title = {Bringing numerous methods for expression and promoter analysis to
a public cloud computing service},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {884--886},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx692},
doi = {10.1093/BIOINFORMATICS/BTX692},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PolanskiGMBODW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cphysics/BurkoffBVWC16,
author = {Nikolas S. Burkoff and
Robert J. N. Baldock and
Csilla V{\'{a}}rnai and
David L. Wild and
G{\'{a}}bor Cs{\'{a}}nyi},
title = {Exploiting molecular dynamics in Nested Sampling simulations of small
peptides},
journal = {Comput. Phys. Commun.},
volume = {201},
pages = {8--18},
year = {2016},
url = {https://doi.org/10.1016/j.cpc.2015.12.005},
doi = {10.1016/J.CPC.2015.12.005},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cphysics/BurkoffBVWC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PenfoldMW15,
author = {Christopher A. Penfold and
Jonathan B. A. Millar and
David L. Wild},
title = {Inferring orthologous gene regulatory networks using interspecies
data fusion},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {97--105},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv267},
doi = {10.1093/BIOINFORMATICS/BTV267},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PenfoldMW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurkoffVW13,
author = {Nikolas S. Burkoff and
Csilla V{\'{a}}rnai and
David L. Wild},
title = {Predicting protein {\(\beta\)}-sheet contacts using a maximum entropy-based
correlated mutation measure},
journal = {Bioinform.},
volume = {29},
number = {5},
pages = {580--587},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt005},
doi = {10.1093/BIOINFORMATICS/BTT005},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BurkoffVW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PenfoldBDW12,
author = {Christopher A. Penfold and
Vicky Buchanan{-}Wollaston and
Katherine J. Denby and
David L. Wild},
title = {Nonparametric Bayesian inference for perturbed and orthologous gene
regulatory networks},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {233--241},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts222},
doi = {10.1093/BIOINFORMATICS/BTS222},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PenfoldBDW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirkGSGW12,
author = {Paul D. W. Kirk and
Jim E. Griffin and
Richard S. Savage and
Zoubin Ghahramani and
David L. Wild},
title = {Bayesian correlated clustering to integrate multiple datasets},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3290--3297},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts595},
doi = {10.1093/BIOINFORMATICS/BTS595},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirkGSGW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CookeSKDW11,
author = {Emma J. Cooke and
Richard S. Savage and
Paul D. W. Kirk and
Robert Darkins and
David L. Wild},
title = {Bayesian hierarchical clustering for microarray time series data with
replicates and outlier measurements},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {399},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-399},
doi = {10.1186/1471-2105-12-399},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CookeSKDW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavageGGCW10,
author = {Richard S. Savage and
Zoubin Ghahramani and
Jim E. Griffin and
Bernard J. de la Cruz and
David L. Wild},
title = {Discovering transcriptional modules by Bayesian data integration},
journal = {Bioinform.},
volume = {26},
number = {12},
pages = {158--167},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq210},
doi = {10.1093/BIOINFORMATICS/BTQ210},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SavageGGCW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/StegleDCWGB10,
author = {Oliver Stegle and
Katherine J. Denby and
Emma J. Cooke and
David L. Wild and
Zoubin Ghahramani and
Karsten M. Borgwardt},
title = {A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential
Gene Expression in Microarray Time Series},
journal = {J. Comput. Biol.},
volume = {17},
number = {3},
pages = {355--367},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0175},
doi = {10.1089/CMB.2009.0175},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/StegleDCWGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/mit/10/AngusBLRW10,
author = {John Angus and
Matthew J. Beal and
Juan Li and
Claudia Rangel and
David L. Wild},
editor = {Neil D. Lawrence and
Mark A. Girolami and
Magnus Rattray and
Guido Sanguinetti},
title = {Inferring Transcriptional Networks Using Prior Biological Knowledge
and Constrained State-Space Models},
booktitle = {Learning and Inference in Computational Systems Biology},
series = {Computational molecular biology},
pages = {117--152},
publisher = {{MIT} Press},
year = {2010},
timestamp = {Fri, 15 May 2020 12:36:51 +0200},
biburl = {https://dblp.org/rec/books/mit/10/AngusBLRW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SavageHXGTGDW09,
author = {Richard S. Savage and
Katherine A. Heller and
Yang Xu and
Zoubin Ghahramani and
William M. Truman and
Murray Grant and
Katherine J. Denby and
David L. Wild},
title = {{R/BHC:} fast Bayesian hierarchical clustering for microarray data},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-242},
doi = {10.1186/1471-2105-10-242},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SavageHXGTGDW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SaqiDKHW09,
author = {Mansoor A. S. Saqi and
Richard J. B. Dobson and
Preben Kraben and
David A. Hodgson and
David L. Wild},
title = {An approach to pathway reconstruction using whole genome metabolic
models and sensitive sequence searching},
journal = {J. Integr. Bioinform.},
volume = {6},
number = {1},
year = {2009},
url = {https://doi.org/10.2390/biecoll-jib-2009-107},
doi = {10.2390/BIECOLL-JIB-2009-107},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SaqiDKHW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RasmussenCGW09,
author = {Carl Edward Rasmussen and
Bernard J. de la Cruz and
Zoubin Ghahramani and
David L. Wild},
title = {Modeling and Visualizing Uncertainty in Gene Expression Clusters Using
Dirichlet Process Mixtures},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {6},
number = {4},
pages = {615--628},
year = {2009},
url = {https://doi.org/10.1109/TCBB.2007.70269},
doi = {10.1109/TCBB.2007.70269},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RasmussenCGW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/StegleDWMMGB09,
author = {Oliver Stegle and
Katherine J. Denby and
David L. Wild and
Stuart McHattie and
Andrew Meade and
Zoubin Ghahramani and
Karsten M. Borgwardt},
editor = {Ivo Grosse and
Steffen Neumann and
Stefan Posch and
Falk Schreiber and
Peter F. Stadler},
title = {Discovering Temporal Patterns of Differential Gene Expression in Microarray
Time Series},
booktitle = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
Martin Luther University Halle-Wittenberg, Germany},
series = {{LNI}},
volume = {{P-157}},
pages = {133--142},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/20297},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/StegleDWMMGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/StegleDWGB09,
author = {Oliver Stegle and
Katherine J. Denby and
David L. Wild and
Zoubin Ghahramani and
Karsten M. Borgwardt},
editor = {Serafim Batzoglou},
title = {A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential
Gene Expression in Microarray Time Series},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {201--216},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_14},
doi = {10.1007/978-3-642-02008-7\_14},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/StegleDWGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scfbm/PodtelezhnikovW08,
author = {Alexei A. Podtelezhnikov and
David L. Wild},
title = {{CRANKITE:} {A} fast polypeptide backbone conformation sampler},
journal = {Source Code Biol. Medicine},
volume = {3},
year = {2008},
url = {https://doi.org/10.1186/1751-0473-3-12},
doi = {10.1186/1751-0473-3-12},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/scfbm/PodtelezhnikovW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChuGPW06,
author = {Wei Chu and
Zoubin Ghahramani and
Alexei A. Podtelezhnikov and
David L. Wild},
title = {Bayesian Segmental Models with Multiple Sequence Alignment Profiles
for Protein Secondary Structure and Contact Map Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {3},
number = {2},
pages = {98--113},
year = {2006},
url = {https://doi.org/10.1109/TCBB.2006.17},
doi = {10.1109/TCBB.2006.17},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChuGPW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ChuGKW06,
author = {Wei Chu and
Zoubin Ghahramani and
Roland Krause and
David L. Wild},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Identifying Protein Complexes in High-Throughput Protein Interaction
Screens Using an Infinite Latent Feature Model},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {231--242},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/chu.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ChuGKW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BealFGRW05,
author = {Matthew J. Beal and
Francesco Falciani and
Zoubin Ghahramani and
Claudia Rangel and
David L. Wild},
title = {A Bayesian approach to reconstructing genetic regulatory networks
with hidden factors},
journal = {Bioinform.},
volume = {21},
number = {3},
pages = {349--356},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti014},
doi = {10.1093/BIOINFORMATICS/BTI014},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BealFGRW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuGFW05,
author = {Wei Chu and
Zoubin Ghahramani and
Francesco Falciani and
David L. Wild},
title = {Biomarker discovery in microarray gene expression data with Gaussian
processes},
journal = {Bioinform.},
volume = {21},
number = {16},
pages = {3385--3393},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti526},
doi = {10.1093/BIOINFORMATICS/BTI526},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuGFW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RangelAGLSGWF04,
author = {Claudia Rangel and
John Angus and
Zoubin Ghahramani and
Maria Lioumi and
Elizabeth Sotheran and
Alessia Gaiba and
David L. Wild and
Francesco Falciani},
title = {Modeling T-cell activation using gene expression profiling and state-space
models},
journal = {Bioinform.},
volume = {20},
number = {9},
pages = {1361--1372},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth093},
doi = {10.1093/BIOINFORMATICS/BTH093},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RangelAGLSGWF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esann/ChuGW04,
author = {Wei Chu and
Zoubin Ghahramani and
David L. Wild},
title = {Protein secondary structure prediction using sigmoid belief networks
to parameterize segmental semi-Markov models},
booktitle = {12th European Symposium on Artificial Neural Networks, {ESANN} 2004,
Bruges, Belgium, April 28-30, 2004, Proceedings},
pages = {81--86},
year = {2004},
url = {https://www.esann.org/sites/default/files/proceedings/legacy/es2004-105.pdf},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/esann/ChuGW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/ChuGW04,
author = {Wei Chu and
Zoubin Ghahramani and
David L. Wild},
editor = {Carla E. Brodley},
title = {A graphical model for protein secondary structure prediction},
booktitle = {Machine Learning, Proceedings of the Twenty-first International Conference
{(ICML} 2004), Banff, Alberta, Canada, July 4-8, 2004},
series = {{ACM} International Conference Proceeding Series},
volume = {69},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/1015330.1015354},
doi = {10.1145/1015330.1015354},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/ChuGW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BourneAKLSGFLWHGCW04,
author = {Philip E. Bourne and
C. K. J. Allerston and
Werner G. Krebs and
Wilfred W. Li and
Ilya N. Shindyalov and
Adam Godzik and
Iddo Friedberg and
Tong Liu and
David L. Wild and
Seungwoo Hwang and
Zoubin Ghahramani and
Li Chen and
John D. Westbrook},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {The Status of Structural Genomics Defined Through the Analysis of
Current Targets and Structures},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {375--386},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/bourne.pdf},
timestamp = {Mon, 11 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/BourneAKLSGFLWHGCW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/DubeyHRRGW04,
author = {Ananya Dubey and
Seungwoo Hwang and
Claudia Rangel and
Carl Edward Rasmussen and
Zoubin Ghahramani and
David L. Wild},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Clustering Protein Sequence and Structure Space with Infinite Gaussian
Mixture Models},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {399--410},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/dubey.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/DubeyHRRGW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RavalGW02,
author = {Alpan Raval and
Zoubin Ghahramani and
David L. Wild},
title = {A Bayesian network model for protein fold and remote homologue recognition},
journal = {Bioinform.},
volume = {18},
number = {6},
pages = {788--801},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.6.788},
doi = {10.1093/BIOINFORMATICS/18.6.788},
timestamp = {Wed, 27 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RavalGW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaqiWH99,
author = {Mansoor A. S. Saqi and
David L. Wild and
M. J. Hartshorn},
title = {Protein analyst - a distributed object environment for protein sequence
and structure analysis},
journal = {Bioinform.},
volume = {15},
number = {6},
pages = {521--522},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.6.521},
doi = {10.1093/BIOINFORMATICS/15.6.521},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaqiWH99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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