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@article{DBLP:journals/corr/abs-2402-13225,
author = {Qiao Jin and
Zhizheng Wang and
Yifan Yang and
Qingqing Zhu and
Donald Wright and
Thomas Huang and
W. John Wilbur and
Zhe He and
Andrew Taylor and
Qingyu Chen and
Zhiyong Lu},
title = {AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale
Clinical Tool Learning},
journal = {CoRR},
volume = {abs/2402.13225},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.13225},
doi = {10.48550/ARXIV.2402.13225},
eprinttype = {arXiv},
eprint = {2402.13225},
timestamp = {Wed, 10 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-13225.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinKCCYWL23,
author = {Qiao Jin and
Won Kim and
Qingyu Chen and
Donald C. Comeau and
Lana Yeganova and
W. John Wilbur and
Zhiyong Lu},
title = {MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed
search logs for zero-shot biomedical information retrieval},
journal = {Bioinform.},
volume = {39},
number = {10},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad651},
doi = {10.1093/BIOINFORMATICS/BTAD651},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JinKCCYWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/LeamanIACWL23,
author = {Robert Leaman and
Rezarta Islamaj and
Alexis Allot and
Qingyu Chen and
W. John Wilbur and
Zhiyong Lu},
title = {Comprehensively identifying Long Covid articles with human-in-the-loop
machine learning},
journal = {Patterns},
volume = {4},
number = {1},
pages = {100659},
year = {2023},
url = {https://doi.org/10.1016/j.patter.2022.100659},
doi = {10.1016/J.PATTER.2022.100659},
timestamp = {Tue, 28 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/LeamanIACWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-00589,
author = {Qiao Jin and
Won Kim and
Qingyu Chen and
Donald C. Comeau and
Lana Yeganova and
W. John Wilbur and
Zhiyong Lu},
title = {BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed
Search Logs for Zero-shot Biomedical Information Retrieval},
journal = {CoRR},
volume = {abs/2307.00589},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.00589},
doi = {10.48550/ARXIV.2307.00589},
eprinttype = {arXiv},
eprint = {2307.00589},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-00589.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KimYCWL22,
author = {Won Kim and
Lana Yeganova and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
title = {Towards a unified search: Improving PubMed retrieval with full text},
journal = {J. Biomed. Informatics},
volume = {134},
pages = {104211},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2022.104211},
doi = {10.1016/J.JBI.2022.104211},
timestamp = {Sun, 22 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/KimYCWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-08124,
author = {Robert Leaman and
Rezarta Islamaj Dogan and
Alexis Allot and
Qingyu Chen and
W. John Wilbur and
Zhiyong Lu},
title = {Comprehensive identification of Long Covid articles with human-in-the-loop
machine learning},
journal = {CoRR},
volume = {abs/2209.08124},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.08124},
doi = {10.48550/ARXIV.2209.08124},
eprinttype = {arXiv},
eprint = {2209.08124},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-08124.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Yeganova0CWL21,
author = {Lana Yeganova and
Won Kim and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
title = {Improving PubMed Retrieval by Integrating Abstract and Full Text Search},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3577495-1.4626034/3577262-1.4626031},
timestamp = {Wed, 17 Apr 2024 11:46:53 +0200},
biburl = {https://dblp.org/rec/conf/amia/Yeganova0CWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YeganovaKCWL21,
author = {Lana Yeganova and
Won Kim and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Measuring the relative importance of full text sections for information
retrieval from scientific literature},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {247--256},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.27},
doi = {10.18653/V1/2021.BIONLP-1.27},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YeganovaKCWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/YeganovaKCBWL20,
author = {Lana Yeganova and
Sun Kim and
Qingyu Chen and
Grigory Balasanov and
W. John Wilbur and
Zhiyong Lu},
title = {Better synonyms for enriching biomedical search},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {12},
pages = {1894--1902},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa151},
doi = {10.1093/JAMIA/OCAA151},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/YeganovaKCBWL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ChenDKWL20,
author = {Qingyu Chen and
Jingcheng Du and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
title = {Deep learning with sentence embeddings pre-trained on biomedical corpora
improves the performance of finding similar sentences in electronic
medical records},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {20-S},
number = {1},
pages = {73},
year = {2020},
url = {https://doi.org/10.1186/s12911-020-1044-0},
doi = {10.1186/S12911-020-1044-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ChenDKWL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-03397,
author = {Lana Yeganova and
Rezarta Islamaj Dogan and
Qingyu Chen and
Robert Leaman and
Alexis Allot and
Chih{-}Hsuan Wei and
Donald C. Comeau and
Won Kim and
Yifan Peng and
W. John Wilbur and
Zhiyong Lu},
title = {Navigating the landscape of {COVID-19} research through literature
analysis: {A} bird's eye view},
journal = {CoRR},
volume = {abs/2008.03397},
year = {2020},
url = {https://arxiv.org/abs/2008.03397},
eprinttype = {arXiv},
eprint = {2008.03397},
timestamp = {Fri, 14 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-03397.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DoganWXGTYZML19,
author = {Rezarta Islamaj Dogan and
W. John Wilbur and
Natalie Xie and
Noreen R. Gonzales and
Narmada Thanki and
Roxanne A. Yamashita and
Chanjuan Zheng and
Aron Marchler{-}Bauer and
Zhiyong Lu},
title = {PubMed Text Similarity Model and its application to curation efforts
in the Conserved Domain Database},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz064},
year = {2019},
url = {https://doi.org/10.1093/database/baz064},
doi = {10.1093/DATABASE/BAZ064},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/DoganWXGTYZML19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Allot0KACWL19,
author = {Alexis Allot and
Qingyu Chen and
Sun Kim and
Roberto Vera Alvarez and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
title = {LitSense: making sense of biomedical literature at sentence level},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Webserver-Issue},
pages = {W594--W599},
year = {2019},
url = {https://doi.org/10.1093/nar/gkz289},
doi = {10.1093/NAR/GKZ289},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Allot0KACWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChenDKWL19,
author = {Qingyu Chen and
Jingcheng Du and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Evaluation of Five Sentence Similarity Models on Electronic Medical
Records},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {533},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3343239},
doi = {10.1145/3307339.3343239},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChenDKWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-03044,
author = {Qingyu Chen and
Jingcheng Du and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
title = {Deep learning with sentence embeddings pre-trained on biomedical corpora
improves the performance of finding similar sentences in electronic
medical records},
journal = {CoRR},
volume = {abs/1909.03044},
year = {2019},
url = {http://arxiv.org/abs/1909.03044},
eprinttype = {arXiv},
eprint = {1909.03044},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-03044.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-02077,
author = {Rezarta Islamaj Dogan and
Lana Yeganova and
Won Kim and
Natalie Xie and
W. John Wilbur},
title = {{PDC} - a probabilistic distributional clustering algorithm: a case
study on suicide articles in PubMed},
journal = {CoRR},
volume = {abs/1912.02077},
year = {2019},
url = {http://arxiv.org/abs/1912.02077},
eprinttype = {arXiv},
eprint = {1912.02077},
timestamp = {Thu, 02 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1912-02077.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/YeganovaKCWL18,
author = {Lana Yeganova and
Won Kim and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
title = {A Field Sensor: computing the composition and intent of PubMed queries},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay052},
year = {2018},
url = {https://doi.org/10.1093/database/bay052},
doi = {10.1093/DATABASE/BAY052},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/YeganovaKCWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YeganovaKBW18,
author = {Lana Yeganova and
Sun Kim and
Grigory Balasanov and
W. John Wilbur},
title = {Discovering themes in biomedical literature using a projection-based
algorithm},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {269:1--269:12},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2240-0},
doi = {10.1186/S12859-018-2240-0},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YeganovaKBW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChenKWL18,
author = {Qingyu Chen and
Sun Kim and
W. John Wilbur and
Zhiyong Lu},
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {Sentence Similarity Measures Revisited: Ranking Sentences in PubMed
Documents},
booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
pages = {531--532},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547.3233640},
doi = {10.1145/3233547.3233640},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChenKWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YeganovaCKWL18,
author = {Lana Yeganova and
Donald C. Comeau and
Won Kim and
W. John Wilbur and
Zhiyong Lu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {SingleCite: Towards an improved Single Citation Search in PubMed},
booktitle = {Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July
19, 2018},
pages = {151--155},
publisher = {Association for Computational Linguistics},
year = {2018},
url = {https://doi.org/10.18653/v1/w18-2318},
doi = {10.18653/V1/W18-2318},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YeganovaCKWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KimYCWL18,
author = {Won Kim and
Lana Yeganova and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {MeSH-based dataset for measuring the relevance of text retrieval},
booktitle = {Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July
19, 2018},
pages = {161--165},
publisher = {Association for Computational Linguistics},
year = {2018},
url = {https://doi.org/10.18653/v1/w18-2320},
doi = {10.18653/V1/W18-2320},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KimYCWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DoganKCCO17,
author = {Rezarta Islamaj Dogan and
Sun Kim and
Andrew Chatr{-}aryamontri and
Christie S. Chang and
Rose Oughtred and
Jennifer M. Rust and
W. John Wilbur and
Donald C. Comeau and
Kara Dolinski and
Mike Tyers},
title = {The BioC-BioGRID corpus: full text articles annotated for curation
of protein-protein and genetic interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw147},
year = {2017},
url = {https://doi.org/10.1093/database/baw147},
doi = {10.1093/DATABASE/BAW147},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DoganKCCO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KimFWL17,
author = {Sun Kim and
Nicolas Fiorini and
W. John Wilbur and
Zhiyong Lu},
title = {Bridging the gap: Incorporating a semantic similarity measure for
effectively mapping PubMed queries to documents},
journal = {J. Biomed. Informatics},
volume = {75},
pages = {122--127},
year = {2017},
url = {https://doi.org/10.1016/j.jbi.2017.09.014},
doi = {10.1016/J.JBI.2017.09.014},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KimFWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KimDCCORBCAMSCO16,
author = {Sun Kim and
Rezarta Islamaj Dogan and
Andrew Chatr{-}aryamontri and
Christie S. Chang and
Rose Oughtred and
Jennifer M. Rust and
Riza Batista{-}Navarro and
Jacob Carter and
Sophia Ananiadou and
S{\'{e}}rgio Matos and
Andr{\'{e}} Santos and
David Campos and
Jos{\'{e}} Lu{\'{\i}}s Oliveira and
Onkar Singh and
Jitendra Jonnagaddala and
Hong{-}Jie Dai and
Emily Chia{-}Yu Su and
Yung{-}Chun Chang and
Yu{-}Chen Su and
Chun{-}Han Chu and
Chien Chin Chen and
Wen{-}Lian Hsu and
Yifan Peng and
Cecilia N. Arighi and
Cathy H. Wu and
K. Vijay{-}Shanker and
Ferhat Aydin and
Zehra Melce H{\"{u}}s{\"{u}}nbeyi and
Arzucan {\"{O}}zg{\"{u}}r and
Soo{-}Yong Shin and
Dongseop Kwon and
Kara Dolinski and
Mike Tyers and
W. John Wilbur and
Donald C. Comeau},
title = {BioCreative {V} BioC track overview: collaborative biocurator assistant
task for BioGRID},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw121},
doi = {10.1093/DATABASE/BAW121},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KimDCCORBCAMSCO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ShinKWK16,
author = {Soo{-}Yong Shin and
Sun Kim and
W. John Wilbur and
Dongseop Kwon},
title = {BioC viewer: a web-based tool for displaying and merging annotations
in BioC},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw106},
doi = {10.1093/DATABASE/BAW106},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ShinKWK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimYW16,
author = {Sun Kim and
Lana Yeganova and
W. John Wilbur},
title = {\emph{Meshable}: searching PubMed abstracts by utilizing MeSH and
MeSH-derived topical terms},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3044--3046},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw331},
doi = {10.1093/BIOINFORMATICS/BTW331},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimYW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YeganovaKKDLCLW16,
author = {Lana Yeganova and
Won Kim and
Sun Kim and
Rezarta Islamaj Dogan and
Wanli Liu and
Donald C. Comeau and
Zhiyong Lu and
W. John Wilbur},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {PubTermVariants: biomedical term variants and their use for PubMed
search},
booktitle = {Proceedings of the 15th Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2016, Berlin, Germany, August 12, 2016},
pages = {141--145},
publisher = {Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/W16-2919},
doi = {10.18653/V1/W16-2919},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YeganovaKKDLCLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ComeauDKWWL16,
author = {Donald C. Comeau and
Rezarta Islamaj Dogan and
Sun Kim and
Chih{-}Hsuan Wei and
W. John Wilbur and
Zhiyong Lu},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {BioCconvert: {A} Conversion Tool Between BioC and PubAnnotation},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/BT304\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ComeauDKWWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KimWL16,
author = {Sun Kim and
W. John Wilbur and
Zhiyong Lu},
title = {Bridging the Gap: a Semantic Similarity Measure between Queries and
Documents},
journal = {CoRR},
volume = {abs/1608.01972},
year = {2016},
url = {http://arxiv.org/abs/1608.01972},
eprinttype = {arXiv},
eprint = {1608.01972},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/KimWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimLW15,
author = {Sun Kim and
Zhiyong Lu and
W. John Wilbur},
title = {Identifying named entities from PubMed{\textregistered}; for enriching
semantic categories},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {57:1--57:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0487-2},
doi = {10.1186/S12859-015-0487-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuVCMW15,
author = {Haibin Liu and
Karin Verspoor and
Donald C. Comeau and
Andrew D. MacKinlay and
W. John Wilbur},
title = {Optimizing graph-based patterns to extract biomedical events from
the literature},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S16}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s16-s2},
doi = {10.1186/1471-2105-16-S16-S2},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuVCMW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KimLYW15,
author = {Sun Kim and
Haibin Liu and
Lana Yeganova and
W. John Wilbur},
title = {Extracting drug-drug interactions from literature using a rich feature-based
linear kernel approach},
journal = {J. Biomed. Informatics},
volume = {55},
pages = {23--30},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.03.002},
doi = {10.1016/J.JBI.2015.03.002},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KimLYW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/KimYW15,
author = {Sun Kim and
Lana Yeganova and
W. John Wilbur},
editor = {Llu{\'{\i}}s M{\`{a}}rquez and
Chris Callison{-}Burch and
Jian Su and
Daniele Pighin and
Yuval Marton},
title = {Summarizing Topical Contents from PubMed Documents Using a Thematic
Analysis},
booktitle = {Proceedings of the 2015 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2015, Lisbon, Portugal, September 17-21,
2015},
pages = {805--810},
publisher = {The Association for Computational Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/d15-1094},
doi = {10.18653/V1/D15-1094},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/KimYW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ArighiWCHKVLWW14,
author = {Cecilia N. Arighi and
Cathy H. Wu and
Kevin Bretonnel Cohen and
Lynette Hirschman and
Martin Krallinger and
Alfonso Valencia and
Zhiyong Lu and
W. John Wilbur and
Thomas C. Wiegers},
title = {BioCreative-IV virtual issue},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau039},
doi = {10.1093/DATABASE/BAU039},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ArighiWCHKVLWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ComeauBDDJKLMMNPRRTVWWW14,
author = {Donald C. Comeau and
Riza Theresa Batista{-}Navarro and
Hong{-}Jie Dai and
Rezarta Islamaj Dogan and
Antonio Jimeno{-}Yepes and
Ritu Khare and
Zhiyong Lu and
Hernani Marques and
Carolyn J. Mattingly and
Mariana L. Neves and
Yifan Peng and
Rafal Rak and
Fabio Rinaldi and
Richard Tzong{-}Han Tsai and
Karin Verspoor and
Thomas C. Wiegers and
Cathy H. Wu and
W. John Wilbur},
title = {BioC interoperability track overview},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau053},
doi = {10.1093/DATABASE/BAU053},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ComeauBDDJKLMMNPRRTVWWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ComeauLDW14,
author = {Donald C. Comeau and
Haibin Liu and
Rezarta Islamaj Dogan and
W. John Wilbur},
title = {Natural language processing pipelines to annotate BioC collections
with an application to the {NCBI} disease corpus},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau056},
doi = {10.1093/DATABASE/BAU056},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ComeauLDW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DoganCYW14,
author = {Rezarta Islamaj Dogan and
Donald C. Comeau and
Lana Yeganova and
W. John Wilbur},
title = {Finding abbreviations in biomedical literature: three BioC-compatible
modules and four BioC-formatted corpora},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau044},
doi = {10.1093/DATABASE/BAU044},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/DoganCYW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KwonKSCW14,
author = {Dongseop Kwon and
Sun Kim and
Soo{-}Yong Shin and
Andrew Chatr{-}aryamontri and
W. John Wilbur},
title = {Assisting manual literature curation for protein-protein interactions
using BioQRator},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau067},
doi = {10.1093/DATABASE/BAU067},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KwonKSCW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiuDKMRWC14,
author = {Wanli Liu and
Rezarta Islamaj Dogan and
Dongseop Kwon and
Hernani Marques and
Fabio Rinaldi and
W. John Wilbur and
Donald C. Comeau},
title = {BioC implementations in Go, Perl, Python and Ruby},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau059},
doi = {10.1093/DATABASE/BAU059},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/LiuDKMRWC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeganovaKKW14,
author = {Lana Yeganova and
Won Kim and
Sun Kim and
W. John Wilbur},
title = {Retro: concept-based clustering of biomedical topical sets},
journal = {Bioinform.},
volume = {30},
number = {22},
pages = {3240--3248},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu514},
doi = {10.1093/BIOINFORMATICS/BTU514},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeganovaKKW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/LiuDKCKYLW14,
author = {Wanli Liu and
Rezarta Islamaj Dogan and
Sun Kim and
Donald C. Comeau and
Won Kim and
Lana Yeganova and
Zhiyong Lu and
W. John Wilbur},
title = {Author name disambiguation for PubMed},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {65},
number = {4},
pages = {765--781},
year = {2014},
url = {https://doi.org/10.1002/asi.23063},
doi = {10.1002/ASI.23063},
timestamp = {Fri, 13 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/LiuDKCKYLW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KimLYW14,
author = {Sun Kim and
Haibin Liu and
Lana Yeganova and
W. John Wilbur},
title = {Extracting drug-drug interactions from literature using a rich feature-based
linear kernel approach},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-001-1.1545410/f-001-1.1545411/a-034-1.1545577/a-035-1.1545574},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/KimLYW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WilburK14,
author = {W. John Wilbur and
Won Kim},
title = {Stochastic Gradient Descent and the Prediction of MeSH for PubMed
Records},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-222-1.1545007/a-223-1.1545004},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WilburK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ArighiCCKWFDCSDMLHGJRMBDBLCSPHALCMCBWLWTRSNCDW13,
author = {Cecilia N. Arighi and
Ben Carterette and
K. Bretonnel Cohen and
Martin Krallinger and
W. John Wilbur and
Petra Fey and
Robert J. Dodson and
Laurel Cooper and
Ceri E. Van Slyke and
Wasila M. Dahdul and
Paula M. Mabee and
Donghui Li and
Bethany R. Harris and
Marc Gillespie and
Silvia Jimenez and
Phoebe M. Roberts and
Lisa Matthews and
Kevin G. Becker and
Harold J. Drabkin and
Susan M. Bello and
Luana Licata and
Andrew Chatr{-}aryamontri and
Mary L. Schaeffer and
Julie Park and
Melissa A. Haendel and
Kimberly Van Auken and
Yuling Li and
Juancarlos Chan and
Hans{-}Michael M{\"{u}}ller and
Hong Cui and
James P. Balhoff and
Chi{-}Yang Wu and
Zhiyong Lu and
Chih{-}Hsuan Wei and
Catalina O. Tudor and
Kalpana Raja and
Suresh Subramani and
Jeyakumar Natarajan and
Juan Miguel Cejuela and
Pratibha Dubey and
Cathy H. Wu},
title = {An overview of the BioCreative 2012 Workshop Track {III:} interactive
text mining task},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bas056},
doi = {10.1093/DATABASE/BAS056},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ArighiCCKWFDCSDMLHGJRMBDBLCSPHALCMCBWLWTRSNCDW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ComeauDCCKLLPRTVVWWW13,
author = {Donald C. Comeau and
Rezarta Islamaj Dogan and
Paolo Ciccarese and
Kevin Bretonnel Cohen and
Martin Krallinger and
Florian Leitner and
Zhiyong Lu and
Yifan Peng and
Fabio Rinaldi and
Manabu Torii and
Alfonso Valencia and
Karin Verspoor and
Thomas C. Wiegers and
Cathy H. Wu and
W. John Wilbur},
title = {BioC: a minimalist approach to interoperability for biomedical text
processing},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat064},
doi = {10.1093/DATABASE/BAT064},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ComeauDCCKLLPRTVVWWW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ComeauDW13,
author = {Donald C. Comeau and
Rezarta Islamaj Dogan and
W. John Wilbur},
title = {BioC: {A} Minimalist Approach to Interoperability for Biomedical Text
Processing},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-084-1.583703/a-088-1.583697},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/ComeauDW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MacKinlayMJLWV13,
author = {Andrew MacKinlay and
David Mart{\'{\i}}nez and
Antonio Jimeno{-}Yepes and
Haibin Liu and
W. John Wilbur and
Karin Verspoor},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {Extracting Biomedical Events and Modifications Using Subgraph Matching
with Noisy Training Data},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {35--44},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2005/},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/MacKinlayMJLWV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiuVCMW13,
author = {Haibin Liu and
Karin Verspoor and
Donald C. Comeau and
Andrew MacKinlay and
W. John Wilbur},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {Generalizing an Approximate Subgraph Matching-based System to Extract
Events in Molecular Biology and Cancer Genetics},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {76--85},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2010/},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/LiuVCMW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/StenetorpGHCDLW13,
author = {Pontus Stenetorp and
Wiktoria Golik and
Thierry Hamon and
Donald C. Comeau and
Rezarta Islamaj Dogan and
Haibin Liu and
W. John Wilbur},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {BioNLP Shared Task 2013: Supporting Resources},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {99--103},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2013/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/StenetorpGHCDLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KimKWLW12,
author = {Sun Kim and
Won Kim and
Chih{-}Hsuan Wei and
Zhiyong Lu and
W. John Wilbur},
title = {Prioritizing PubMed articles for the Comparative Toxicogenomic Database
utilizing semantic information},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas042},
doi = {10.1093/DATABASE/BAS042},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/KimKWLW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NeveolWL12,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
W. John Wilbur and
Zhiyong Lu},
title = {Improving links between literature and biological data with text mining:
a case study with GEO, {PDB} and {MEDLINE}},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas026},
doi = {10.1093/DATABASE/BAS026},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NeveolWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WuACHKLMVWW12,
author = {Cathy H. Wu and
Cecilia N. Arighi and
Kevin Bretonnel Cohen and
Lynette Hirschman and
Martin Krallinger and
Zhiyong Lu and
Carolyn J. Mattingly and
Alfonso Valencia and
Thomas C. Wiegers and
W. John Wilbur},
title = {BioCreative-2012 Virtual Issue},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas049},
doi = {10.1093/DATABASE/BAS049},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WuACHKLMVWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKSW12,
author = {Sun Kim and
Dongseop Kwon and
Soo{-}Yong Shin and
W. John Wilbur},
title = {{PIE} \emph{the search}: searching PubMed literature for protein interaction
information},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {597--598},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr702},
doi = {10.1093/BIOINFORMATICS/BTR702},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/YeganovaKCW12,
author = {Lana Yeganova and
Won Kim and
Donald C. Comeau and
W. John Wilbur},
title = {Finding biomedical categories in Medline\({}^{\mbox{{\textregistered}}}\)},
journal = {J. Biomed. Semant.},
volume = {3},
number = {{S-3}},
pages = {S3},
year = {2012},
url = {http://www.jbiomedsem.com/content/3/S3/S3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/YeganovaKCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KimW12,
author = {Sun Kim and
W. John Wilbur},
title = {Thematic clustering of text documents using an EM-based approach},
journal = {J. Biomed. Semant.},
volume = {3},
number = {{S-3}},
pages = {S6},
year = {2012},
url = {http://www.jbiomedsem.com/content/3/S3/S6},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KimW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KimYCW12,
author = {Won Kim and
Lana Yeganova and
Donald C. Comeau and
W. John Wilbur},
title = {Identifying well-formed biomedical phrases in MEDLINE{\textregistered}
text},
journal = {J. Biomed. Informatics},
volume = {45},
number = {6},
pages = {1035--1041},
year = {2012},
url = {https://doi.org/10.1016/j.jbi.2012.05.005},
doi = {10.1016/J.JBI.2012.05.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KimYCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SayersBBBBCCCDFFFGHKKLLLMMMMMKOPPPSSSSSSSSTWWWYY12,
author = {Eric W. Sayers and
Tanya Barrett and
Dennis A. Benson and
Evan Bolton and
Stephen H. Bryant and
Kathi Canese and
Vyacheslav Chetvernin and
Deanna M. Church and
Michael DiCuccio and
Scott Federhen and
Michael Feolo and
Ian M. Fingerman and
Lewis Y. Geer and
Wolfgang Helmberg and
Yuri Kapustin and
Sergey Krasnov and
David Landsman and
David J. Lipman and
Zhiyong Lu and
Thomas L. Madden and
Tom Madej and
Donna R. Maglott and
Aron Marchler{-}Bauer and
Vadim Miller and
Ilene Karsch{-}Mizrachi and
James Ostell and
Anna R. Panchenko and
Lon Phan and
Kim D. Pruitt and
Gregory D. Schuler and
Edwin Sequeira and
Stephen T. Sherry and
Martin Shumway and
Karl Sirotkin and
Douglas J. Slotta and
Alexandre Souvorov and
Grigory Starchenko and
Tatiana A. Tatusova and
Lukas Wagner and
Yanli Wang and
W. John Wilbur and
Eugene Yaschenko and
Jian Ye},
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {13--25},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1184},
doi = {10.1093/NAR/GKR1184},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SayersBBBBCCCDFFFGHKKLLLMMMMMKOPPPSSSSSSSSTWWWYY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/SmithKW12,
author = {Larry H. Smith and
Won Kim and
W. John Wilbur},
title = {{PROBE:} Periodic Random Orbiter Algorithm for Machine Learning},
booktitle = {Information Retrieval and Knowledge Discovery in Biomedical Text,
Papers from the 2012 {AAAI} Fall Symposium, Arlington, Virginia, USA,
November 2-4, 2012},
series = {{AAAI} Technical Report},
volume = {{FS-12-05}},
publisher = {{AAAI}},
year = {2012},
url = {http://www.aaai.org/ocs/index.php/FSS/FSS12/paper/view/5634},
timestamp = {Tue, 08 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aaaifs/SmithKW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/YeganovaGKW12,
author = {Lana Yeganova and
Vahan Grigoryan and
Won Kim and
W. John Wilbur},
title = {Automatic Identification of Key Concepts in Large PubMed Retrievals},
booktitle = {Information Retrieval and Knowledge Discovery in Biomedical Text,
Papers from the 2012 {AAAI} Fall Symposium, Arlington, Virginia, USA,
November 2-4, 2012},
series = {{AAAI} Technical Report},
volume = {{FS-12-05}},
publisher = {{AAAI}},
year = {2012},
url = {http://www.aaai.org/ocs/index.php/FSS/FSS12/paper/view/5608},
timestamp = {Tue, 08 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aaaifs/YeganovaGKW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KimKCW12,
author = {Sun Kim and
Won Kim and
Donald C. Comeau and
W. John Wilbur},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Bonnie L. Webber and
Jun'ichi Tsujii and
John Pestian},
title = {Classifying Gene Sentences in Biomedical Literature by Combining High-Precision
Gene Identifiers},
booktitle = {Proceedings of the 2012 Workshop on Biomedical Natural Language Processing,
BioNLP@HLT-NAACL Montr{\`{e}}al, Canada, June 8, 2012},
pages = {185--192},
publisher = {Association for Computational Linguistics},
year = {2012},
url = {https://aclanthology.org/W12-2423/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KimKCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeveolWL11,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
W. John Wilbur and
Zhiyong Lu},
title = {Extraction of data deposition statements from the literature: a method
for automatically tracking research results},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3306--3312},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr573},
doi = {10.1093/BIOINFORMATICS/BTR573},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeveolWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilburK11,
author = {W. John Wilbur and
Won Kim},
title = {Improving a gold standard: treating human relevance judgments of {MEDLINE}
document pairs},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S5},
doi = {10.1186/1471-2105-12-S3-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WilburK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YeganovaCW11,
author = {Lana Yeganova and
Donald C. Comeau and
W. John Wilbur},
title = {Machine learning with naturally labeled data for identifying abbreviation
definitions},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S6},
doi = {10.1186/1471-2105-12-S3-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YeganovaCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArighiLKCWVHW11,
author = {Cecilia N. Arighi and
Zhiyong Lu and
Martin Krallinger and
Kevin Bretonnel Cohen and
W. John Wilbur and
Alfonso Valencia and
Lynette Hirschman and
Cathy H. Wu},
title = {Overview of the BioCreative {III} Workshop},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S1},
doi = {10.1186/1471-2105-12-S8-S1},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArighiLKCWVHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11,
author = {Zhiyong Lu and
Hung{-}Yu Kao and
Chih{-}Hsuan Wei and
Minlie Huang and
Jingchen Liu and
Cheng{-}Ju Kuo and
Chun{-}Nan Hsu and
Richard Tzong{-}Han Tsai and
Hong{-}Jie Dai and
Naoaki Okazaki and
Han{-}Cheol Cho and
Martin Gerner and
Ill{\'{e}}s Solt and
Shashank Agarwal and
Feifan Liu and
Dina Vishnyakova and
Patrick Ruch and
Martin Romacker and
Fabio Rinaldi and
Sanmitra Bhattacharya and
Padmini Srinivasan and
Hongfang Liu and
Manabu Torii and
S{\'{e}}rgio Matos and
David Campos and
Karin Verspoor and
Kevin M. Livingston and
W. John Wilbur},
title = {The gene normalization task in BioCreative {III}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S2},
doi = {10.1186/1471-2105-12-S8-S2},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrallingerVLSCWPBLICCTSRLGMKWRSTALWRNEL11,
author = {Martin Krallinger and
Miguel Vazquez and
Florian Leitner and
David Salgado and
Andrew Chatr{-}aryamontri and
Andrew G. Winter and
Livia Perfetto and
Leonardo Briganti and
Luana Licata and
Marta Iannuccelli and
Luisa Castagnoli and
Gianni Cesareni and
Mike Tyers and
Gerold Schneider and
Fabio Rinaldi and
Robert Leaman and
Graciela Gonzalez and
S{\'{e}}rgio Matos and
Sun Kim and
W. John Wilbur and
Luis M. Rocha and
Hagit Shatkay and
Ashish V. Tendulkar and
Shashank Agarwal and
Feifan Liu and
Xinglong Wang and
Rafal Rak and
Keith Noto and
Charles Elkan and
Zhiyong Lu},
title = {The Protein-Protein Interaction tasks of BioCreative {III:} classification/ranking
of articles and linking bio-ontology concepts to full text},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S3},
doi = {10.1186/1471-2105-12-S8-S3},
timestamp = {Thu, 07 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KrallingerVLSCWPBLICCTSRLGMKWRSTALWRNEL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimW11,
author = {Sun Kim and
W. John Wilbur},
title = {Classifying protein-protein interaction articles using word and syntactic
features},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S9},
doi = {10.1186/1471-2105-12-S8-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SayersBBBBCCCDFFFGHKLLLMMMMMMOPPPSSSSSSSSTWWWYY11,
author = {Eric W. Sayers and
Tanya Barrett and
Dennis A. Benson and
Evan Bolton and
Stephen H. Bryant and
Kathi Canese and
Vyacheslav Chetvernin and
Deanna M. Church and
Michael DiCuccio and
Scott Federhen and
Michael Feolo and
Ian M. Fingerman and
Lewis Y. Geer and
Wolfgang Helmberg and
Yuri Kapustin and
David Landsman and
David J. Lipman and
Zhiyong Lu and
Thomas L. Madden and
Tom Madej and
Donna R. Maglott and
Aron Marchler{-}Bauer and
Vadim Miller and
Ilene Mizrachi and
James Ostell and
Anna R. Panchenko and
Lon Phan and
Kim D. Pruitt and
Gregory D. Schuler and
Edwin Sequeira and
Stephen T. Sherry and
Martin Shumway and
Karl Sirotkin and
Douglas J. Slotta and
Alexandre Souvorov and
Grigory Starchenko and
Tatiana A. Tatusova and
Lukas Wagner and
Yanli Wang and
W. John Wilbur and
Eugene Yaschenko and
Jian Ye},
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {38--51},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1172},
doi = {10.1093/NAR/GKQ1172},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SayersBBBBCCCDFFFGHKLLLMMMMMMOPPPSSSSSSSSTWWWYY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/NeveolWL11,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
W. John Wilbur and
Zhiyong Lu},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Automatic extraction of data deposition statements: where do the research
results go?},
booktitle = {Proceedings of the 2011 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011},
pages = {103--104},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-0213/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/NeveolWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YeganovaCKW11,
author = {Lana Yeganova and
Donald C. Comeau and
Won Kim and
W. John Wilbur},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Text Mining Techniques for Leveraging Positively Labeled Data},
booktitle = {Proceedings of the 2011 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011},
pages = {155--163},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-0220/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YeganovaCKW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/KimW11,
author = {Sun Kim and
W. John Wilbur},
editor = {Xue{-}wen Chen and
Tharam S. Dillon and
Hisao Ishibuchi and
Jian Pei and
Haixun Wang and
M. Arif Wani},
title = {An {EM} Clustering Algorithm which Produces a Dual Representation},
booktitle = {10th International Conference on Machine Learning and Applications
and Workshops, {ICMLA} 2011, Honolulu, Hawaii, USA, December 18-21,
2011. Volume 2: Special Sessions and Workshop},
pages = {90--95},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICMLA.2011.29},
doi = {10.1109/ICMLA.2011.29},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/KimW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/YeganovaKCW11,
author = {Lana Yeganova and
Won Kim and
Donald C. Comeau and
W. John Wilbur},
editor = {Xue{-}wen Chen and
Tharam S. Dillon and
Hisao Ishibuchi and
Jian Pei and
Haixun Wang and
M. Arif Wani},
title = {Comparison of Two Methods for Finding Biomedical Categories in Medline},
booktitle = {10th International Conference on Machine Learning and Applications
and Workshops, {ICMLA} 2011, Honolulu, Hawaii, USA, December 18-21,
2011. Volume 2: Special Sessions and Workshop},
pages = {96--99},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICMLA.2011.50},
doi = {10.1109/ICMLA.2011.50},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/YeganovaKCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ir/SmithW10,
author = {Larry H. Smith and
W. John Wilbur},
title = {Finding related sentence pairs in {MEDLINE}},
journal = {Inf. Retr.},
volume = {13},
number = {6},
pages = {601--617},
year = {2010},
url = {https://doi.org/10.1007/s10791-010-9126-8},
doi = {10.1007/S10791-010-9126-8},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ir/SmithW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SayersBBBBCCCDFFGHKLLLMMMMMMOPPSSSSSSSSTWWWYY10,
author = {Eric W. Sayers and
Tanya Barrett and
Dennis A. Benson and
Evan Bolton and
Stephen H. Bryant and
Kathi Canese and
Vyacheslav Chetvernin and
Deanna M. Church and
Michael DiCuccio and
Scott Federhen and
Michael Feolo and
Lewis Y. Geer and
Wolfgang Helmberg and
Yuri Kapustin and
David Landsman and
David J. Lipman and
Zhiyong Lu and
Thomas L. Madden and
Tom Madej and
Donna R. Maglott and
Aron Marchler{-}Bauer and
Vadim Miller and
Ilene Mizrachi and
James Ostell and
Anna R. Panchenko and
Kim D. Pruitt and
Gregory D. Schuler and
Edwin Sequeira and
Stephen T. Sherry and
Martin Shumway and
Karl Sirotkin and
Douglas J. Slotta and
Alexandre Souvorov and
Grigory Starchenko and
Tatiana A. Tatusova and
Lukas Wagner and
Yanli Wang and
W. John Wilbur and
Eugene Yaschenko and
Jian Ye},
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {5--16},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp967},
doi = {10.1093/NAR/GKP967},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SayersBBBBCCCDFFGHKLLLMMMMMMOPPSSSSSSSSTWWWYY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/KimW10,
author = {Won Kim and
W. John Wilbur},
editor = {Sorin Draghici and
Taghi M. Khoshgoftaar and
Vasile Palade and
Witold Pedrycz and
M. Arif Wani and
Xingquan Zhu},
title = {Improving a Gold Standard: Treating Human Relevance Judgments of {MEDLINE}
Document Pairs},
booktitle = {The Ninth International Conference on Machine Learning and Applications,
{ICMLA} 2010, Washington, DC, USA, 12-14 December 2010},
pages = {491--498},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/ICMLA.2010.79},
doi = {10.1109/ICMLA.2010.79},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/KimW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/YeganovaCW10,
author = {Lana Yeganova and
Donald C. Comeau and
W. John Wilbur},
editor = {Sorin Draghici and
Taghi M. Khoshgoftaar and
Vasile Palade and
Witold Pedrycz and
M. Arif Wani and
Xingquan Zhu},
title = {Identifying Abbreviation Definitions Machine Learning with Naturally
Labeled Data},
booktitle = {The Ninth International Conference on Machine Learning and Applications,
{ICMLA} 2010, Washington, DC, USA, 12-14 December 2010},
pages = {499--505},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/ICMLA.2010.166},
doi = {10.1109/ICMLA.2010.166},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/YeganovaCW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuXW09,
author = {Zhiyong Lu and
Natalie Xie and
W. John Wilbur},
title = {Identifying related journals through log analysis},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3038--3039},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp529},
doi = {10.1093/BIOINFORMATICS/BTP529},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuXW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ir/LuKW09,
author = {Zhiyong Lu and
Won Kim and
W. John Wilbur},
title = {Evaluation of query expansion using MeSH in PubMed},
journal = {Inf. Retr.},
volume = {12},
number = {1},
pages = {69--80},
year = {2009},
url = {https://doi.org/10.1007/s10791-008-9074-8},
doi = {10.1007/S10791-008-9074-8},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ir/LuKW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ir/LinW09,
author = {Jimmy Lin and
W. John Wilbur},
title = {Modeling actions of PubMed users with \emph{n}-gram language models},
journal = {Inf. Retr.},
volume = {12},
number = {4},
pages = {487--503},
year = {2009},
url = {https://doi.org/10.1007/s10791-008-9067-7},
doi = {10.1007/S10791-008-9067-7},
timestamp = {Fri, 27 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ir/LinW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ir/WilburK09,
author = {W. John Wilbur and
Won Kim},
title = {The ineffectiveness of within-document term frequency in text classification},
journal = {Inf. Retr.},
volume = {12},
number = {5},
pages = {509--525},
year = {2009},
url = {https://doi.org/10.1007/s10791-008-9069-5},
doi = {10.1007/S10791-008-9069-5},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ir/WilburK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LuKW09,
author = {Zhiyong Lu and
Won Kim and
W. John Wilbur},
title = {Viewpoint Paper: Evaluating Relevance Ranking Strategies for {MEDLINE}
Retrieval},
journal = {J. Am. Medical Informatics Assoc.},
volume = {16},
number = {1},
pages = {32--36},
year = {2009},
url = {https://doi.org/10.1197/jamia.M2935},
doi = {10.1197/JAMIA.M2935},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LuKW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/YeganovaCKW09,
author = {Lana Yeganova and
Donald C. Comeau and
Won Kim and
W. John Wilbur},
title = {How to interpret PubMed queries and why it matters},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {60},
number = {2},
pages = {264--274},
year = {2009},
url = {https://doi.org/10.1002/asi.20979},
doi = {10.1002/ASI.20979},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasis/YeganovaCKW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LuW09,
author = {Zhiyong Lu and
W. John Wilbur},
title = {Improving accuracy for identifying related PubMed queries by an integrated
approach},
journal = {J. Biomed. Informatics},
volume = {42},
number = {5},
pages = {831--838},
year = {2009},
url = {https://doi.org/10.1016/j.jbi.2008.12.006},
doi = {10.1016/J.JBI.2008.12.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LuW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SmithW09,
author = {Lawrence H. Smith and
W. John Wilbur},
title = {The value of parsing as feature generation for gene mention recognition},
journal = {J. Biomed. Informatics},
volume = {42},
number = {5},
pages = {895--904},
year = {2009},
url = {https://doi.org/10.1016/j.jbi.2009.03.011},
doi = {10.1016/J.JBI.2009.03.011},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SmithW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RzhetskySW09,
author = {Andrey Rzhetsky and
Hagit Shatkay and
W. John Wilbur},
title = {How to Get the Most out of Your Curation Effort},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {5},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000391},
doi = {10.1371/JOURNAL.PCBI.1000391},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RzhetskySW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LuWMIS09,
author = {Zhiyong Lu and
W. John Wilbur and
Johanna R. McEntyre and
Alexey Iskhakov and
Lee Szilagyi},
title = {Finding Query Suggestions for PubMed},
booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2009},
publisher = {{AMIA}},
year = {2009},
url = {https://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-077-1.627521/a-078-1.627518},
timestamp = {Wed, 17 Apr 2024 11:48:10 +0200},
biburl = {https://dblp.org/rec/conf/amia/LuWMIS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/NeveolKWL09,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Won Kim and
W. John Wilbur and
Zhiyong Lu},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Exploring Two Biomedical Text Genres for Disease Recognition},
booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder,
Colorado, USA, June 4-5, 2009},
pages = {144--152},
publisher = {Association for Computational Linguistics},
year = {2009},
url = {https://aclanthology.org/W09-1319/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/NeveolKWL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jcdl/MurrayLWL09,
author = {G. Craig Murray and
Jimmy Lin and
W. John Wilbur and
Zhiyong Lu},
editor = {Fred Heath and
Mary Lynn Rice{-}Lively and
Richard Furuta},
title = {Users' adjustments to unsuccessful queries in biomedical search},
booktitle = {Proceedings of the 2009 Joint International Conference on Digital
Libraries, {JCDL} 2009, Austin, TX, USA, June 15-19, 2009},
pages = {433--434},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1555400.1555499},
doi = {10.1145/1555400.1555499},
timestamp = {Fri, 27 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/jcdl/MurrayLWL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShatkayPRW08,
author = {Hagit Shatkay and
Fengxia Pan and
Andrey Rzhetsky and
W. John Wilbur},
title = {Multi-dimensional classification of biomedical text: Toward automated,
practical provision of high-utility text to diverse users},
journal = {Bioinform.},
volume = {24},
number = {18},
pages = {2086--2093},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn381},
doi = {10.1093/BIOINFORMATICS/BTN381},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShatkayPRW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohnCKW08,
author = {Sunghwan Sohn and
Donald C. Comeau and
Won Kim and
W. John Wilbur},
title = {Abbreviation definition identification based on automatic precision
estimates},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-402},
doi = {10.1186/1471-2105-9-402},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohnCKW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipm/LinDGW08,
author = {Jimmy Lin and
Michael DiCuccio and
Vahan Grigoryan and
W. John Wilbur},
title = {Navigating information spaces: {A} case study of related article search
in PubMed},
journal = {Inf. Process. Manag.},
volume = {44},
number = {5},
pages = {1771--1783},
year = {2008},
url = {https://doi.org/10.1016/j.ipm.2008.04.002},
doi = {10.1016/J.IPM.2008.04.002},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipm/LinDGW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnKCW08,
author = {Sunghwan Sohn and
Won Kim and
Donald C. Comeau and
W. John Wilbur},
title = {Research Paper: Optimal Training Sets for Bayesian Prediction of MeSH\({}^{\mbox{{\textregistered}}}\)
Assignment},
journal = {J. Am. Medical Informatics Assoc.},
volume = {15},
number = {4},
pages = {546--553},
year = {2008},
url = {https://doi.org/10.1197/jamia.M2431},
doi = {10.1197/JAMIA.M2431},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SohnKCW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LuKW08,
author = {Zhiyong Lu and
Won Kim and
W. John Wilbur},
title = {Evaluating Relevance Ranking Strategies for {MEDLINE} Retrieval},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-090-1.626294/a-091-1.626291},
timestamp = {Wed, 17 Apr 2024 11:48:12 +0200},
biburl = {https://dblp.org/rec/conf/amia/LuKW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DoganGWM07,
author = {Rezarta Islamaj Dogan and
Lise Getoor and
W. John Wilbur and
Stephen M. Mount},
title = {Features generated for computational splice-site prediction correspond
to functional elements},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-410},
doi = {10.1186/1471-2105-8-410},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DoganGWM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinW07,
author = {Jimmy Lin and
W. John Wilbur},
title = {PubMed related articles: a probabilistic topic-based model for content
similarity},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-423},
doi = {10.1186/1471-2105-8-423},
timestamp = {Fri, 27 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LinW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ir/LinW07,
author = {Jimmy Lin and
W. John Wilbur},
title = {Syntactic sentence compression in the biomedical domain: facilitating
access to related articles},
journal = {Inf. Retr.},
volume = {10},
number = {4-5},
pages = {393--414},
year = {2007},
url = {https://doi.org/10.1007/s10791-007-9029-5},
doi = {10.1007/S10791-007-9029-5},
timestamp = {Fri, 27 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ir/LinW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/YuKHW07,
author = {Hong Yu and
Won Kim and
Vasileios Hatzivassiloglou and
W. John Wilbur},
title = {Using {MEDLINE} as a knowledge source for disambiguating abbreviations
and acronyms in full-text biomedical journal articles},
journal = {J. Biomed. Informatics},
volume = {40},
number = {2},
pages = {150--159},
year = {2007},
url = {https://doi.org/10.1016/j.jbi.2006.06.001},
doi = {10.1016/J.JBI.2006.06.001},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/YuKHW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DoganGWM07,
author = {Rezarta Islamaj Dogan and
Lise Getoor and
W. John Wilbur and
Stephen M. Mount},
title = {SplicePort - An interactive splice-site analysis tool},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Web-Server-Issue},
pages = {285--291},
year = {2007},
url = {https://doi.org/10.1093/nar/gkm407},
doi = {10.1093/NAR/GKM407},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DoganGWM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/Wilbur07,
author = {W. John Wilbur},
editor = {K. Bretonnel Cohen and
Dina Demner{-}Fushman and
Carol Friedman and
Lynette Hirschman and
John Pestian},
title = {Unsupervised Learning of the Morpho-Semantic Relationship in {MEDLINE}},
booktitle = {Biological, translational, and clinical language processing, BioNLP@ACL
2007, Prague, Czech Republic, June 29, 2007},
pages = {201--208},
publisher = {Association for Computational Linguistics},
year = {2007},
url = {https://aclanthology.org/W07-1032/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/Wilbur07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/DoganGW07,
author = {Rezarta Islamaj Dogan and
Lise Getoor and
W. John Wilbur},
title = {Characterizing {RNA} Secondary-Structure Features and Their Effects
on Splice-Site Prediction},
booktitle = {Workshops Proceedings of the 7th {IEEE} International Conference on
Data Mining {(ICDM} 2007), October 28-31, 2007, Omaha, Nebraska, {USA}},
pages = {89--94},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICDMW.2007.119},
doi = {10.1109/ICDMW.2007.119},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/DoganGW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/Demner-FushmanHILMRRSWA07,
author = {Dina Demner{-}Fushman and
Susanne M. Humphrey and
Nicholas C. Ide and
Russell F. Loane and
James G. Mork and
Patrick Ruch and
Miguel E. Ruiz and
Lawrence H. Smith and
W. John Wilbur and
Alan R. Aronson},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Combining Resources to Find Answers to Biomedical Questions},
booktitle = {Proceedings of The Sixteenth Text REtrieval Conference, {TREC} 2007,
Gaithersburg, Maryland, USA, November 5-9, 2007},
series = {{NIST} Special Publication},
volume = {500-274},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2007},
url = {http://trec.nist.gov/pubs/trec16/papers/nlm.geo.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/Demner-FushmanHILMRRSWA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilburRS06,
author = {W. John Wilbur and
Andrey Rzhetsky and
Hagit Shatkay},
title = {New directions in biomedical text annotation: definitions, guidelines
and corpus construction},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {356},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-356},
doi = {10.1186/1471-2105-7-356},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WilburRS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ir/WilburKX06,
author = {W. John Wilbur and
Won Kim and
Natalie Xie},
title = {Spelling correction in the PubMed search engine},
journal = {Inf. Retr.},
volume = {9},
number = {5},
pages = {543--564},
year = {2006},
url = {https://doi.org/10.1007/s10791-006-9002-8},
doi = {10.1007/S10791-006-9002-8},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ir/WilburKX06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nle/SmithRW06,
author = {Lawrence H. Smith and
Thomas C. Rindflesch and
W. John Wilbur},
title = {The importance of the lexicon in tagging biological text},
journal = {Nat. Lang. Eng.},
volume = {12},
number = {4},
pages = {335--351},
year = {2006},
url = {https://doi.org/10.1017/S1351324905003967},
doi = {10.1017/S1351324905003967},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nle/SmithRW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tois/YuKHW06,
author = {Hong Yu and
Won Kim and
Vasileios Hatzivassiloglou and
W. John Wilbur},
title = {A large scale, corpus-based approach for automatically disambiguating
biomedical abbreviations},
journal = {{ACM} Trans. Inf. Syst.},
volume = {24},
number = {3},
pages = {380--404},
year = {2006},
url = {https://doi.org/10.1145/1165774.1165778},
doi = {10.1145/1165774.1165778},
timestamp = {Sun, 22 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tois/YuKHW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/TanabeTMCW06,
author = {Lorraine K. Tanabe and
Lynne H. Thom and
Wayne Matten and
Donald C. Comeau and
W. John Wilbur},
title = {SemCat: Semantically Categorized Entities for Genomics},
booktitle = {{AMIA} 2006, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 11-15, 2006},
publisher = {{AMIA}},
year = {2006},
url = {https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-001-1.623243/f-001-1.623244/a-151-1.623294/a-152-1.623291},
timestamp = {Wed, 17 Apr 2024 11:48:16 +0200},
biburl = {https://dblp.org/rec/conf/amia/TanabeTMCW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/TanabeW06,
author = {Lorraine K. Tanabe and
W. John Wilbur},
editor = {Karin Verspoor and
Kevin Bretonnel Cohen and
Ben Goertzel and
Inderjeet Mani},
title = {A Priority Model for Named Entities},
booktitle = {Proceedings of the Workshop on Linking Natural Language and Biology,
BioNLP@NAACL-HLT 2006, New York, NY, USA, June 8, 2006},
pages = {33--40},
publisher = {Association for Computational Linguistics},
year = {2006},
url = {https://aclanthology.org/W06-3305/},
timestamp = {Thu, 17 Feb 2022 16:43:16 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/TanabeW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/IslamajGW06,
author = {Rezarta Islamaj Dogan and
Lise Getoor and
W. John Wilbur},
editor = {Johannes F{\"{u}}rnkranz and
Tobias Scheffer and
Myra Spiliopoulou},
title = {A Feature Generation Algorithm for Sequences with Application to Splice-Site
Prediction},
booktitle = {Knowledge Discovery in Databases: {PKDD} 2006, 10th European Conference
on Principles and Practice of Knowledge Discovery in Databases, Berlin,
Germany, September 18-22, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4213},
pages = {553--560},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11871637\_55},
doi = {10.1007/11871637\_55},
timestamp = {Tue, 14 May 2019 10:00:47 +0200},
biburl = {https://dblp.org/rec/conf/pkdd/IslamajGW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/Demner-FushmanHILSTWADRR06,
author = {Dina Demner{-}Fushman and
Susanne M. Humphrey and
Nicholas C. Ide and
Russell F. Loane and
Patrick Ruch and
Miguel E. Ruiz and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Alan R. Aronson},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Finding Relevant Passages in Scientific Articles: Fusion of Automatic
Approaches vs. an Interactive Team Effort},
booktitle = {Proceedings of the Fifteenth Text REtrieval Conference, {TREC} 2006,
Gaithersburg, Maryland, USA, November 14-17, 2006},
series = {{NIST} Special Publication},
volume = {500-272},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2006},
url = {http://trec.nist.gov/pubs/trec15/papers/nlm.geo.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/Demner-FushmanHILSTWADRR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanabeXTMW05,
author = {Lorraine K. Tanabe and
Natalie Xie and
Lynne H. Thom and
Wayne Matten and
W. John Wilbur},
title = {{GENETAG:} a tagged corpus for gene/protein named entity recognition},
journal = {{BMC} Bioinform.},
volume = {6},
number = {{S-1}},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-S1-S3},
doi = {10.1186/1471-2105-6-S1-S3},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TanabeXTMW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/WilburYK05,
author = {W. John Wilbur and
Lana Yeganova and
Won Kim},
title = {The Synergy Between {PAV} and AdaBoost},
journal = {Mach. Learn.},
volume = {61},
number = {1-3},
pages = {71--103},
year = {2005},
url = {https://doi.org/10.1007/s10994-005-1123-6},
doi = {10.1007/S10994-005-1123-6},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/WilburYK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KimW05,
author = {Won Kim and
W. John Wilbur},
title = {A Strategy for Assigning New Concepts in the {MEDLINE} Database},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-001-1.616182/f-001-1.616183/a-079-1.616452/a-080-1.616449},
timestamp = {Wed, 17 Apr 2024 11:48:22 +0200},
biburl = {https://dblp.org/rec/conf/amia/KimW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SmithTRW05,
author = {Lawrence H. Smith and
Lorraine K. Tanabe and
Thomas C. Rindflesch and
W. John Wilbur},
editor = {K. Bretonnel Cohen and
Lynette Hirschman and
Hagit Shatkay and
Christian Blaschke},
title = {MedTag: {A} Collection of Biomedical Annotations},
booktitle = {Proceedings of the {ACL-ISMB} Workshop on Linking Biological Literature,
Ontologies and Databases: Mining Biological Semantics@ISMB 2005, Detroit,
MI, {USA} June 24, 2005},
pages = {32--37},
publisher = {Association for Computational Linguistics},
year = {2005},
url = {https://aclanthology.org/W05-1305/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/SmithTRW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonDHLRRSTWL05,
author = {Alan R. Aronson and
Dina Demner{-}Fushman and
Susanne M. Humphrey and
Jimmy Lin and
Patrick Ruch and
Miguel E. Ruiz and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving
and Annotating Textual Genomics Documents},
booktitle = {Proceedings of the Fourteenth Text REtrieval Conference, {TREC} 2005,
Gaithersburg, Maryland, USA, November 15-18, 2005},
series = {{NIST} Special Publication},
volume = {500-266},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2005},
url = {http://trec.nist.gov/pubs/trec14/papers/nlm-umd.geo.pdf},
timestamp = {Fri, 27 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/trec/AronsonDHLRRSTWL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithRW04,
author = {Lawrence H. Smith and
Thomas C. Rindflesch and
W. John Wilbur},
title = {MedPost: a part-of-speech tagger for bioMedical text},
journal = {Bioinform.},
volume = {20},
number = {14},
pages = {2320--2321},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth227},
doi = {10.1093/BIOINFORMATICS/BTH227},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithRW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/YeganovaSW04,
author = {Lana Yeganova and
Lawrence H. Smith and
W. John Wilbur},
title = {Identification of related gene/protein names based on an {HMM} of
name variations},
journal = {Comput. Biol. Chem.},
volume = {28},
number = {2},
pages = {97--107},
year = {2004},
url = {https://doi.org/10.1016/j.compbiolchem.2003.12.003},
doi = {10.1016/J.COMPBIOLCHEM.2003.12.003},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/YeganovaSW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/SmithW04,
author = {Lawrence H. Smith and
W. John Wilbur},
title = {Retrieving definitional content for ontology development},
journal = {Comput. Biol. Chem.},
volume = {28},
number = {5-6},
pages = {387--391},
year = {2004},
url = {https://doi.org/10.1016/j.compbiolchem.2004.09.007},
doi = {10.1016/J.COMPBIOLCHEM.2004.09.007},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/SmithW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/ComeauW04,
author = {Donald C. Comeau and
W. John Wilbur},
title = {Non-word identification or spell checking without a dictionary},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {55},
number = {2},
pages = {169--177},
year = {2004},
url = {https://doi.org/10.1002/asi.10354},
doi = {10.1002/ASI.10354},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasis/ComeauW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/TanabeW04,
author = {Lorraine K. Tanabe and
W. John Wilbur},
title = {Generation of a Large Gene/protein Lexicon by Morphological Pattern
Analysis},
journal = {J. Bioinform. Comput. Biol.},
volume = {1},
number = {4},
pages = {611--626},
year = {2004},
url = {https://doi.org/10.1142/S0219720004000399},
doi = {10.1142/S0219720004000399},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/TanabeW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RzhetskyIKKKMYDWW04,
author = {Andrey Rzhetsky and
Ivan Iossifov and
Tomohiro Koike and
Michael Krauthammer and
Pauline Kra and
Mitzi Morris and
Hong Yu and
Pablo Ariel Dubou{\'{e}} and
Wubin Weng and
W. John Wilbur},
title = {GeneWays: a system for extracting, analyzing, visualizing, and integrating
molecular pathway data},
journal = {J. Biomed. Informatics},
volume = {37},
number = {1},
pages = {43--53},
year = {2004},
url = {https://doi.org/10.1016/j.jbi.2003.10.001},
doi = {10.1016/J.JBI.2003.10.001},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/RzhetskyIKKKMYDWW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/YuKHW04,
author = {Hong Yu and
Won Kim and
Vasileios Hatzivassiloglou and
W. John Wilbur},
title = {Using {MEDLINE} as a Knowledge Source for Disambiguating Abbreviations
in Full-Text Biomedical Journal Articles},
booktitle = {17th {IEEE} Symposium on Computer-Based Medical Systems {(CBMS} 2004),
24-25 June 2004, Bethesda, MD, {USA}},
pages = {27},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CBMS.2004.1311686},
doi = {10.1109/CBMS.2004.1311686},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/YuKHW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonHIKLMSTWXDL04,
author = {Alan R. Aronson and
Susanne M. Humphrey and
Nicholas C. Ide and
Won Kim and
Russell F. Loane and
James G. Mork and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Natalie Xie and
Dina Demner{-}Fushman and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Knowledge-Intensive and Statistical Approaches to the Retrieval and
Annotation of Genomics {MEDLINE} Citations},
booktitle = {Proceedings of the Thirteenth Text REtrieval Conference, {TREC} 2004,
Gaithersburg, Maryland, USA, November 16-19, 2004},
series = {{NIST} Special Publication},
volume = {500-261},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2004},
url = {http://trec.nist.gov/pubs/trec13/papers/nlm-umd-ul.geo.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/AronsonHIKLMSTWXDL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/SmithYW03,
author = {Lawrence H. Smith and
Lana Yeganova and
W. John Wilbur},
title = {Hidden Markov models and optimized sequence alignments},
journal = {Comput. Biol. Chem.},
volume = {27},
number = {1},
pages = {77--84},
year = {2003},
url = {https://doi.org/10.1016/S1476-9271(02)00096-8},
doi = {10.1016/S1476-9271(02)00096-8},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/SmithYW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WilburK03,
author = {W. John Wilbur and
Won Kim},
title = {The Dimensions of Indexing},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-001-1.619623/f-001-1.619624/a-144-1.619662/a-145-1.619659},
timestamp = {Wed, 17 Apr 2024 11:48:28 +0200},
biburl = {https://dblp.org/rec/conf/amia/WilburK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanabeW02,
author = {Lorraine K. Tanabe and
W. John Wilbur},
title = {Tagging gene and protein names in biomedical text},
journal = {Bioinform.},
volume = {18},
number = {8},
pages = {1124--1132},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.8.1124},
doi = {10.1093/BIOINFORMATICS/18.8.1124},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanabeW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/YuHRW02,
author = {Hong Yu and
Vasileios Hatzivassiloglou and
Andrey Rzhetsky and
W. John Wilbur},
title = {Automatically identifying gene/protein terms in {MEDLINE} abstracts},
journal = {J. Biomed. Informatics},
volume = {35},
number = {5-6},
pages = {322--330},
year = {2002},
url = {https://doi.org/10.1016/S1532-0464(03)00032-7},
doi = {10.1016/S1532-0464(03)00032-7},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/YuHRW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/TanabeW02,
author = {Lorraine K. Tanabe and
W. John Wilbur},
editor = {Stephen Johnson},
title = {Tagging gene and protein names in full text articles},
booktitle = {Proceedings of the {ACL} 2002 Workshop on Natural Language Processing
in the Biomedical Domain, July 11, 2002, University of Pennsylvania,
Philadelphia, PA, {USA}},
pages = {9--13},
publisher = {{ACL}},
year = {2002},
url = {https://doi.org/10.3115/1118149.1118151},
doi = {10.3115/1118149.1118151},
timestamp = {Fri, 06 Aug 2021 00:40:50 +0200},
biburl = {https://dblp.org/rec/conf/acl/TanabeW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KimW02,
author = {Won Kim and
W. John Wilbur},
title = {{DNA} splice site detection: a comparison of specific and general
methods},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-078-1.613015/a-079-1.613012},
timestamp = {Wed, 17 Apr 2024 11:48:33 +0200},
biburl = {https://dblp.org/rec/conf/amia/KimW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuHFRW02,
author = {Hong Yu and
Vasileios Hatzivassiloglou and
Carol Friedman and
Andrey Rzhetsky and
W. John Wilbur},
title = {Automatic extraction of gene and protein synonyms from {MEDLINE} and
journal articles},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-185-1.612693/a-186-1.612690},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuHFRW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/Wilbur02,
author = {W. John Wilbur},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {A Thematic Analysis of the {AIDS} Literature},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {386--397},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/wilbur.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/Wilbur02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/KimW01,
author = {Won Kim and
W. John Wilbur},
title = {Amino Acid Residue Environments and Predictions of Residue Type},
journal = {Comput. Chem.},
volume = {25},
number = {4},
pages = {411--422},
year = {2001},
url = {https://doi.org/10.1016/S0097-8485(01)00075-4},
doi = {10.1016/S0097-8485(01)00075-4},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/KimW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/KimW01,
author = {Won Kim and
W. John Wilbur},
title = {Corpus-based statistical screening for content-bearing terms},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {52},
number = {3},
pages = {247--259},
year = {2001},
url = {https://doi.org/10.1002/1097-4571(2000)9999:9999\&\#60;::AID-ASI1588\&\#62;3.0.CO;2-7},
doi = {10.1002/1097-4571(2000)9999:9999\&\#60;::AID-ASI1588\&\#62;3.0.CO;2-7},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasis/KimW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jis/Wilbur01,
author = {W. John Wilbur},
title = {Global term weights for document retrieval learned from {TREC} data},
journal = {J. Inf. Sci.},
volume = {27},
number = {5},
pages = {303--310},
year = {2001},
url = {https://doi.org/10.1177/016555150102700501},
doi = {10.1177/016555150102700501},
timestamp = {Thu, 06 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jis/Wilbur01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KimAW01,
author = {Won Kim and
Alan R. Aronson and
W. John Wilbur},
title = {Automatic MeSH term assignment and quality assessment},
booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 3-7, 2001},
publisher = {{AMIA}},
year = {2001},
url = {https://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-064-1.599945/a-065-1.599942},
timestamp = {Wed, 17 Apr 2024 11:48:39 +0200},
biburl = {https://dblp.org/rec/conf/amia/KimAW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/WilburN00,
author = {W. John Wilbur and
Andrew F. Neuwald},
title = {A Theory of Information with Special Application to Search Problems},
journal = {Comput. Chem.},
volume = {24},
number = {1},
pages = {33--42},
year = {2000},
url = {https://doi.org/10.1016/S0097-8485(00)80005-4},
doi = {10.1016/S0097-8485(00)80005-4},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/WilburN00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KimW00,
author = {Won Kim and
W. John Wilbur},
title = {Research Paper: Corpus-based Statistical Screening for Phrase Identification},
journal = {J. Am. Medical Informatics Assoc.},
volume = {7},
number = {5},
pages = {499--511},
year = {2000},
url = {https://doi.org/10.1136/jamia.2000.0070499},
doi = {10.1136/JAMIA.2000.0070499},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KimW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/adl/ShatkayW00,
author = {Hagit Shatkay and
W. John Wilbur},
title = {Finding Themes in Medline Documents: Probabilistic Similarity Search},
booktitle = {Proceedings of {IEEE} Advances in Digital Libraries 2000 {(ADL} 2000),
Washington, DC, USA, May 22-24, 2000},
pages = {183--192},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/ADL.2000.848381},
doi = {10.1109/ADL.2000.848381},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/adl/ShatkayW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AronsonBCHMNRW00,
author = {Alan R. Aronson and
Olivier Bodenreider and
Florence Chang and
Susanne M. Humphrey and
James G. Mork and
Stuart J. Nelson and
Thomas C. Rindflesch and
W. John Wilbur},
title = {The {NLM} Indexing Initiative},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-003-1.609968/a-004-1.609965},
timestamp = {Wed, 17 Apr 2024 11:48:44 +0200},
biburl = {https://dblp.org/rec/conf/amia/AronsonBCHMNRW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Wilbur00,
author = {W. John Wilbur},
title = {Boosting na{\"{\i}}ve Bayesian learning on a large subset of
{MEDLINE}},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-185-1.609422/a-186-1.609419},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Wilbur00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ShatkayEWB00,
author = {Hagit Shatkay and
Stephen Edwards and
W. John Wilbur and
Mark Boguski},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale
Gene Analysis},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {317--328},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-033.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/ShatkayEWB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NelsonADWBCMM99,
author = {Stuart J. Nelson and
Alan R. Aronson and
Tamas E. Doszkocs and
W. John Wilbur and
Olivier Bodenreider and
H. Florence Chang and
James G. Mork and
Alexa T. McCray},
title = {Automated Assignment of Medical Subject Headings},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-002-1.592771/f-001-1.592772/a-322-1.592996/a-323-1.592993},
timestamp = {Wed, 17 Apr 2024 11:48:49 +0200},
biburl = {https://dblp.org/rec/conf/amia/NelsonADWBCMM99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WilburHDMAB99,
author = {W. John Wilbur and
George F. Hazard Jr. and
Guy Divita and
James G. Mork and
Alan R. Aronson and
Allen C. Browne},
title = {Analysis of biomedical text for chemical names: a comparison of three
methods},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-001-1.593353/f-001-1.593354/a-035-1.593862/a-036-1.593859},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WilburHDMAB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/Wilbur98,
author = {W. John Wilbur},
title = {A Comparison of Group and Individual Performance Among Subject Experts
and Untrained Workers at the Document Retrieval Task},
journal = {J. Am. Soc. Inf. Sci.},
volume = {49},
number = {6},
pages = {517--529},
year = {1998},
url = {https://doi.org/10.1002/(SICI)1097-4571(19980501)49:6\&\#60;517::AID-ASI4\&\#62;3.0.CO;2-T},
doi = {10.1002/(SICI)1097-4571(19980501)49:6\&\#60;517::AID-ASI4\&\#62;3.0.CO;2-T},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/Wilbur98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tois/Wilbur98,
author = {W. John Wilbur},
title = {The Knowledge in Multiple Human Relevance Judgments},
journal = {{ACM} Trans. Inf. Syst.},
volume = {16},
number = {2},
pages = {101--126},
year = {1998},
url = {https://doi.org/10.1145/279339.279340},
doi = {10.1145/279339.279340},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tois/Wilbur98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/WilburY96,
author = {W. John Wilbur and
Yiming Yang},
title = {An analysis of statistical term strength and its use in the indexing
and retrieval of molecular biology texts},
journal = {Comput. Biol. Medicine},
volume = {26},
number = {3},
pages = {209--222},
year = {1996},
url = {https://doi.org/10.1016/0010-4825(95)00055-0},
doi = {10.1016/0010-4825(95)00055-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/WilburY96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipm/Wilbur96,
author = {W. John Wilbur},
title = {Human Subjectivity and Performance Limits in Document Retrieval},
journal = {Inf. Process. Manag.},
volume = {32},
number = {5},
pages = {515--527},
year = {1996},
url = {https://doi.org/10.1016/0306-4573(96)00028-3},
doi = {10.1016/0306-4573(96)00028-3},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ipm/Wilbur96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/YangW96,
author = {Yiming Yang and
W. John Wilbur},
title = {Using Corpus Statistics to Remove Redundant Words in Text Categorization},
journal = {J. Am. Soc. Inf. Sci.},
volume = {47},
number = {5},
pages = {357--369},
year = {1996},
url = {https://doi.org/10.1002/(SICI)1097-4571(199605)47:5\&\#60;357::AID-ASI3\&\#62;3.0.CO;2-V},
doi = {10.1002/(SICI)1097-4571(199605)47:5\&\#60;357::AID-ASI3\&\#62;3.0.CO;2-V},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/YangW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipm/WilburC94,
author = {W. John Wilbur and
Leona Coffee},
title = {The Effectiveness of Document Neighboring in Search Enhancement},
journal = {Inf. Process. Manag.},
volume = {30},
number = {2},
pages = {253--266},
year = {1994},
url = {https://doi.org/10.1016/0306-4573(94)90068-X},
doi = {10.1016/0306-4573(94)90068-X},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ipm/WilburC94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jis/Wilbur94,
author = {W. John Wilbur},
title = {Non-parametric significance tests of retrieval performance comparisons},
journal = {J. Inf. Sci.},
volume = {20},
number = {4},
pages = {270--284},
year = {1994},
url = {https://doi.org/10.1177/016555159402000405},
doi = {10.1177/016555159402000405},
timestamp = {Thu, 06 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jis/Wilbur94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/Wilbur93,
author = {W. John Wilbur},
title = {Retrieval Testing with Hypergeometric Document Models},
journal = {J. Am. Soc. Inf. Sci.},
volume = {44},
number = {6},
pages = {340--351},
year = {1993},
url = {https://doi.org/10.1002/(SICI)1097-4571(199307)44:6\&\#60;340::AID-ASI4\&\#62;3.0.CO;2-Z},
doi = {10.1002/(SICI)1097-4571(199307)44:6\&\#60;340::AID-ASI4\&\#62;3.0.CO;2-Z},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/Wilbur93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/is/Wilbur92,
author = {W. John Wilbur},
title = {An information measure of retrieval performance},
journal = {Inf. Syst.},
volume = {17},
number = {4},
pages = {283--298},
year = {1992},
url = {https://doi.org/10.1016/0306-4379(92)90019-J},
doi = {10.1016/0306-4379(92)90019-J},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/is/Wilbur92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/Wilbur92,
author = {W. John Wilbur},
title = {Retrieval Testing by the Comparison of Statistically Independent Retrieval
Methods},
journal = {J. Am. Soc. Inf. Sci.},
volume = {43},
number = {5},
pages = {358--370},
year = {1992},
url = {https://doi.org/10.1002/(SICI)1097-4571(199206)43:5\&\#60;358::AID-ASI4\&\#62;3.0.CO;2-I},
doi = {10.1002/(SICI)1097-4571(199206)43:5\&\#60;358::AID-ASI4\&\#62;3.0.CO;2-I},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/Wilbur92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jis/WilburS92,
author = {W. John Wilbur and
Karl Sirotkin},
title = {The automatic identification of stop words},
journal = {J. Inf. Sci.},
volume = {18},
number = {1},
pages = {45--55},
year = {1992},
url = {https://doi.org/10.1177/016555159201800106},
doi = {10.1177/016555159201800106},
timestamp = {Thu, 06 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jis/WilburS92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LipmanWSW84,
author = {David J. Lipman and
W. John Wilbur and
Temple F. Smith and
Michael S. Waterman},
title = {On the statistical significance of nucleic acid similarities},
journal = {Nucleic Acids Res.},
volume = {12},
number = {1},
pages = {215--226},
year = {1984},
url = {https://doi.org/10.1093/nar/12.1Part1.215},
doi = {10.1093/NAR/12.1PART1.215},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LipmanWSW84.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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