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ORCIDBibTeX records: Marco Vanoni
@inproceedings{DBLP:conf/pdp/GaluzziIGCVADP23,
author = {Bruno G. Galuzzi and
Stefano Izzo and
Fabio Giampaolo and
Salvatore Cuomo and
Marco Vanoni and
Lilia Alberghina and
Chiara Damiani and
Francesco Piccialli},
editor = {Raffaele Montella and
Javier Garc{\'{\i}}a Blas and
Daniele D'Agostino},
title = {Coupling constrained-based flux sampling and clustering to tackle
cancer metabolic heterogeneity},
booktitle = {31st Euromicro International Conference on Parallel, Distributed and
Network-Based Processing, {PDP} 2023, Naples, Italy, March 1-3, 2023},
pages = {185--192},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/PDP59025.2023.00037},
doi = {10.1109/PDP59025.2023.00037},
timestamp = {Thu, 15 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pdp/GaluzziIGCVADP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaluzziVD22,
author = {Bruno G. Galuzzi and
Marco Vanoni and
Chiara Damiani},
title = {Combining denoising of RNA-seq data and flux balance analysis for
cluster analysis of single cells},
journal = {{BMC} Bioinform.},
volume = {23-S},
number = {6},
pages = {445},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-04967-6},
doi = {10.1186/S12859-022-04967-6},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaluzziVD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FilippoPGBGMCAV22,
author = {Marzia Di Filippo and
Dario Pescini and
Bruno Giovanni Galuzzi and
Marcella Bonanomi and
Daniela Gaglio and
Eleonora Mangano and
Clarissa Consolandi and
Lilia Alberghina and
Marco Vanoni and
Chiara Damiani},
title = {{INTEGRATE:} Model-based multi-omics data integration to characterize
multi-level metabolic regulation},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {2},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1009337},
doi = {10.1371/JOURNAL.PCBI.1009337},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FilippoPGBGMCAV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/DAngeloPBV22,
author = {Massimiliano D'Angelo and
Pasquale Palumbo and
Stefano Busti and
Marco Vanoni},
title = {A coarse-grain model for cellular growth accounting for ribosome synthesis},
booktitle = {61st {IEEE} Conference on Decision and Control, {CDC} 2022, Cancun,
Mexico, December 6-9, 2022},
pages = {3859--3864},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/CDC51059.2022.9993154},
doi = {10.1109/CDC51059.2022.9993154},
timestamp = {Wed, 18 Jan 2023 15:37:37 +0100},
biburl = {https://dblp.org/rec/conf/cdc/DAngeloPBV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/TsopraFLALVDSCT21,
author = {Rosy Tsopra and
Xos{\'{e}} M. Fern{\'{a}}ndez and
Claudio Luchinat and
Lilia Alberghina and
Hans Lehrach and
Marco Vanoni and
Felix Dreher and
Osman Ugur Sezerman and
Marc Cuggia and
Marie de Tayrac and
Edvins Miklasevics and
Lucian Mihai Itu and
Marius Geanta and
Lesley Ogilvie and
Florence Godey and
Cristian Nicolae Boldisor and
Boris Campillo{-}Gimenez and
Cosmina Cioroboiu and
Costin Florian Ciusdel and
Simona Coman and
Oliver Hijano Cubelos and
Alina Itu and
Bodo Lange and
Matthieu Le Gallo and
Alexandra Lespagnol and
Giancarlo Mauri and
H. Okan Soykam and
Bastien Rance and
Paola Turano and
Leonardo Tenori and
Alessia Vignoli and
Christoph Wierling and
Nora Benhabiles and
Anita Burgun},
title = {A framework for validating {AI} in precision medicine: considerations
from the European ITFoC consortium},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {21},
number = {1},
pages = {274},
year = {2021},
url = {https://doi.org/10.1186/s12911-021-01634-3},
doi = {10.1186/S12911-021-01634-3},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/TsopraFLALVDSCT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/MasperoDAGFVCCR20,
author = {Davide Maspero and
Chiara Damiani and
Marco Antoniotti and
Alex Graudenzi and
Marzia Di Filippo and
Marco Vanoni and
Giulio Caravagna and
Riccardo Colombo and
Daniele Ramazzotti and
Dario Pescini},
title = {The Influence of Nutrients Diffusion on a Metabolism-driven Model
of a Multi-cellular System},
journal = {Fundam. Informaticae},
volume = {171},
number = {1-4},
pages = {279--295},
year = {2020},
url = {https://doi.org/10.3233/FI-2020-1883},
doi = {10.3233/FI-2020-1883},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fuin/MasperoDAGFVCCR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DamianiMFCPGWAV19,
author = {Chiara Damiani and
Davide Maspero and
Marzia Di Filippo and
Riccardo Colombo and
Dario Pescini and
Alex Graudenzi and
Hans V. Westerhoff and
Lilia Alberghina and
Marco Vanoni and
Giancarlo Mauri},
title = {Integration of single-cell RNA-seq data into population models to
characterize cancer metabolism},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {2},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1006733},
doi = {10.1371/JOURNAL.PCBI.1006733},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/DamianiMFCPGWAV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/MasperoFAPMVGD19,
author = {Davide Maspero and
Marzia Di Filippo and
Fabrizio Angaroni and
Dario Pescini and
Giancarlo Mauri and
Marco Vanoni and
Alex Graudenzi and
Chiara Damiani},
editor = {Paolo Cazzaniga and
Daniela Besozzi and
Ivan Merelli and
Luca Manzoni},
title = {Integration of Single-Cell RNA-Sequencing Data into Flux Balance Cellular
Automata},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 16th International Meeting, {CIBB} 2019, Bergamo, Italy, September
4-6, 2019, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12313},
pages = {207--215},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-63061-4\_19},
doi = {10.1007/978-3-030-63061-4\_19},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibb/MasperoFAPMVGD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/csysl/ManesPCVA18,
author = {Costanzo Manes and
Pasquale Palumbo and
Valerio Cusimano and
Marco Vanoni and
Lilia Alberghina},
title = {Modeling Biological Timing and Synchronization Mechanisms by Means
of Interconnections of Stochastic Switches},
journal = {{IEEE} Control. Syst. Lett.},
volume = {2},
number = {1},
pages = {19--24},
year = {2018},
url = {https://doi.org/10.1109/LCSYS.2017.2720958},
doi = {10.1109/LCSYS.2017.2720958},
timestamp = {Tue, 24 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/csysl/ManesPCVA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/PalumboVPBA18,
author = {Pasquale Palumbo and
Marco Vanoni and
Federico Papa and
Stefano Busti and
Lilia Alberghina},
title = {Whole yeast model: what and why},
journal = {PeerJ Prepr.},
volume = {6},
pages = {e27327},
year = {2018},
url = {https://doi.org/10.7287/peerj.preprints.27327v1},
doi = {10.7287/PEERJ.PREPRINTS.27327V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/PalumboVPBA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DamianiCGMPWMVA17,
author = {Chiara Damiani and
Riccardo Colombo and
Daniela Gaglio and
Fabrizia Mastroianni and
Dario Pescini and
Hans V. Westerhoff and
Giancarlo Mauri and
Marco Vanoni and
Lilia Alberghina},
title = {A metabolic core model elucidates how enhanced utilization of glucose
and glutamine, with enhanced glutamine-dependent lactate production,
promotes cancer cell growth: The WarburQ effect},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {9},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005758},
doi = {10.1371/JOURNAL.PCBI.1005758},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/DamianiCGMPWMVA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wivace/PalumboVPBWTA17,
author = {Pasquale Palumbo and
Marco Vanoni and
Federico Papa and
Stefano Busti and
Meike T. Wortel and
Bas Teusink and
Lilia Alberghina},
editor = {Marcello Pelillo and
Irene Poli and
Andrea Roli and
Roberto Serra and
Debora Slanzi and
Marco Villani},
title = {An Integrated Model Quantitatively Describing Metabolism, Growth and
Cell Cycle in Budding Yeast},
booktitle = {Artificial Life and Evolutionary Computation - 12th Italian Workshop,
{WIVACE} 2017, Venice, Italy, September 19-21, 2017, Revised Selected
Papers},
series = {Communications in Computer and Information Science},
volume = {830},
pages = {165--180},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-78658-2\_13},
doi = {10.1007/978-3-319-78658-2\_13},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wivace/PalumboVPBWTA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/FilippoCDPGVAM16,
author = {Marzia Di Filippo and
Riccardo Colombo and
Chiara Damiani and
Dario Pescini and
Daniela Gaglio and
Marco Vanoni and
Lilia Alberghina and
Giancarlo Mauri},
title = {Zooming-in on cancer metabolic rewiring with tissue specific constraint-based
models},
journal = {Comput. Biol. Chem.},
volume = {62},
pages = {60--69},
year = {2016},
url = {https://doi.org/10.1016/j.compbiolchem.2016.03.002},
doi = {10.1016/J.COMPBIOLCHEM.2016.03.002},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/FilippoCDPGVAM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/DamianiPCMAVM14,
author = {Chiara Damiani and
Dario Pescini and
Riccardo Colombo and
Sara Molinari and
Lilia Alberghina and
Marco Vanoni and
Giancarlo Mauri},
title = {An ensemble evolutionary constraint-based approach to understand the
emergence of metabolic phenotypes},
journal = {Nat. Comput.},
volume = {13},
number = {3},
pages = {321--331},
year = {2014},
url = {https://doi.org/10.1007/s11047-014-9439-4},
doi = {10.1007/S11047-014-9439-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nc/DamianiPCMAVM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/DamianiCMPGVAM13,
author = {Chiara Damiani and
Riccardo Colombo and
Sara Molinari and
Dario Pescini and
Daniela Gaglio and
Marco Vanoni and
Lilia Alberghina and
Giancarlo Mauri},
editor = {Alex Graudenzi and
Giulio Caravagna and
Giancarlo Mauri and
Marco Antoniotti},
title = {An ensemble approach to the study of the emergence of metabolic and
proliferative disorders via Flux Balance Analysis},
booktitle = {Proceedings Wivace 2013 - Italian Workshop on Artificial Life and
Evolutionary Computation, Milan, Italy, July 1-2, 2013},
series = {{EPTCS}},
volume = {130},
pages = {92--97},
year = {2013},
url = {https://doi.org/10.4204/EPTCS.130.15},
doi = {10.4204/EPTCS.130.15},
timestamp = {Tue, 11 May 2021 13:27:13 +0200},
biburl = {https://dblp.org/rec/journals/corr/DamianiCMPGVAM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PapaleoRTVCFAVGC11,
author = {Elena Papaleo and
Valeria Ranzani and
Farida Tripodi and
Alessandro Vitriolo and
Claudia Cirulli and
Piercarlo Fantucci and
Lilia Alberghina and
Marco Vanoni and
Luca De Gioia and
Paola Coccetti},
title = {An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular
Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {5},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002056},
doi = {10.1371/JOURNAL.PCBI.1002056},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PapaleoRTVCFAVGC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/BustiCAV10,
author = {Stefano Busti and
Paola Coccetti and
Lilia Alberghina and
Marco Vanoni},
title = {Glucose Signaling-Mediated Coordination of Cell Growth and Cell Cycle
in \emph{Saccharomyces Cerevisiae}},
journal = {Sensors},
volume = {10},
number = {6},
pages = {6195--6240},
year = {2010},
url = {https://doi.org/10.3390/s100606195},
doi = {10.3390/S100606195},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sensors/BustiCAV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BalestrieriAVC09,
author = {Chiara Balestrieri and
Lilia Alberghina and
Marco Vanoni and
Ferdinando Chiaradonna},
title = {Data recovery and integration from public databases uncovers transformation-specific
transcriptional downregulation of cAMP-PKA pathway-encoding genes},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-12}},
pages = {1},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S12-S1},
doi = {10.1186/1471-2105-10-S12-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BalestrieriAVC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlfieriBCGMVKA09,
author = {Roberta Alfieri and
Matteo Barberis and
Ferdinando Chiaradonna and
Daniela Gaglio and
Luciano Milanesi and
Marco Vanoni and
Edda Klipp and
Lilia Alberghina},
title = {Towards a systems biology approach to mammalian cell cycle: modeling
the entrance into {S} phase of quiescent fibroblasts after serum stimulation},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-12}},
pages = {16},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S12-S16},
doi = {10.1186/1471-2105-10-S12-S16},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlfieriBCGMVKA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BarberisKVA07,
author = {Matteo Barberis and
Edda Klipp and
Marco Vanoni and
Lilia Alberghina},
title = {Cell Size at {S} Phase Initiation: An Emergent Property of the G\({}_{\mbox{1}}\)/S
Network},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {4},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030064},
doi = {10.1371/JOURNAL.PCBI.0030064},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BarberisKVA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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