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ORCIDBibTeX records: Nicola Soranzo
@article{DBLP:journals/ploscb/HiltemannRGHLBJWBGGRBMSCDSBPGDFF23,
author = {Saskia D. Hiltemann and
Helena Rasche and
Simon L. Gladman and
Hans{-}Rudolf Hotz and
Delphine Larivi{\`{e}}re and
Daniel J. Blankenberg and
Pratik D. Jagtap and
Thomas Wollmann and
Anthony Bretaudeau and
Nadia Gou{\'{e}} and
Timothy J. Griffin and
Coline Royaux and
Yvan Le Bras and
Subina P. Mehta and
Anna Syme and
Frederik Coppens and
Bert Droesbeke and
Nicola Soranzo and
Wendi A. Bacon and
Fotis E. Psomopoulos and
Crist{\'{o}}bal Gallardo{-}Alba and
John Davis and
Melanie Christine F{\"{o}}ll and
Matthias Fahrner and
Maria A. Doyle and
Beatriz Serrano{-}Solano and
Anne Fouilloux and
Peter van Heusden and
Wolfgang Maier and
Dave Clements and
Florian Heyl and
The Galaxy Team and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
B{\'{e}}r{\'{e}}nice Batut},
title = {Galaxy Training: {A} powerful framework for teaching!},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {1},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010752},
doi = {10.1371/JOURNAL.PCBI.1010752},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/HiltemannRGHLBJWBGGRBMSCDSBPGDFF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AfganNGBGSOMLSF22,
author = {Enis Afgan and
Anton Nekrutenko and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Daniel J. Blankenberg and
Jeremy Goecks and
Michael C. Schatz and
Alexander E. Ostrovsky and
Alexandru Mahmoud and
Andrew J. Lonie and
Anna Syme and
Anne Fouilloux and
Anthony Bretaudeau and
Anup Kumar and
Arthur C. Eschenlauer and
Assunta D. Desanto and
Aysam Guerler and
Beatriz Serrano{-}Solano and
B{\'{e}}r{\'{e}}nice Batut and
Bradley W. Langhorst and
Bridget Carr and
Bryan A. Raubenolt and
Cameron J. Hyde and
Catherine J. Bromhead and
Christopher B. Barnett and
Coline Royaux and
Crist{\'{o}}bal Gallardo and
Daniel J. Fornika and
Dannon Baker and
Dave Bouvier and
Dave Clements and
David A. de Lima Morais and
David Lopez Tabernero and
Delphine Larivi{\`{e}}re and
Engy Nasr and
Federico Zambelli and
Florian Heyl and
Fotis E. Psomopoulos and
Frederik Coppens and
Gareth R. Price and
Gianmauro Cuccuru and
Gildas Le Corguill{\'{e}} and
Gregory Von Kuster and
Gulsum Gudukbay and
Helena Rasche and
Hans{-}Rudolf Hotz and
Ignacio Eguinoa and
Igor V. Makunin and
Isuru Ranawaka and
James Taylor and
Jayadev Joshi and
Jennifer Hillman{-}Jackson and
John Chilton and
Kaivan Kamali and
Keith Suderman and
Krzysztof Poterlowicz and
Yvan Le Bras and
Lucille Lopez{-}Delisle and
Luke Sargent and
Madeline E. Bassetti and
Marco Antonio Tangaro and
Marius van den Beek and
Martin Cech and
Matthias Bernt and
Matthias Fahrner and
Mehmet Tekman and
Melanie Christine F{\"{o}}ll and
Michael R. Crusoe and
Miguel Roncoroni and
Natalie Kucher and
Nate Coraor and
Nicholas Stoler and
Nick Rhodes and
Nicola Soranzo and
Niko Pinter and
Nuwan Goonasekera and
Pablo A. Moreno and
Pavankumar Videm and
Petera Melanie and
Pietro Mandreoli and
Pratik D. Jagtap and
Qiang Gu and
Ralf J. M. Weber and
Ross Lazarus and
Ruben H. P. Vorderman and
Saskia D. Hiltemann and
Sergey Golitsynskiy and
Shilpa Garg and
Simon A. Bray and
Simon L. Gladman and
Simone Leo and
Subina P. Mehta and
Timothy J. Griffin and
Vahid Jalili and
Yves Vandenbrouck and
Victor Wen and
Vijay K. Nagampalli and
Wendi A. Bacon and
Willem L. De Koning and
Wolfgang Maier and
Peter J. Briggs},
title = {The Galaxy platform for accessible, reproducible and collaborative
biomedical analyses: 2022 update},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{W1}},
pages = {345--351},
year = {2022},
url = {https://doi.org/10.1093/nar/gkac247},
doi = {10.1093/NAR/GKAC247},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AfganNGBGSOMLSF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AfganBBBBCCCCGG18,
author = {Enis Afgan and
Dannon Baker and
B{\'{e}}r{\'{e}}nice Batut and
Marius van den Beek and
Dave Bouvier and
Martin Cech and
John Chilton and
Dave Clements and
Nate Coraor and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Aysam Guerler and
Jennifer Hillman{-}Jackson and
Saskia D. Hiltemann and
Vahid Jalili and
Helena Rasche and
Nicola Soranzo and
Jeremy Goecks and
James Taylor and
Anton Nekrutenko and
Daniel J. Blankenberg},
title = {The Galaxy platform for accessible, reproducible and collaborative
biomedical analyses: 2018 update},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Webserver-Issue},
pages = {W537--W544},
year = {2018},
url = {https://doi.org/10.1093/nar/gky379},
doi = {10.1093/NAR/GKY379},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AfganBBBBCCCCGG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AfganBBBBCCCCEG16,
author = {Enis Afgan and
Dannon Baker and
Marius van den Beek and
Daniel J. Blankenberg and
Dave Bouvier and
Martin Cech and
John Chilton and
Dave Clements and
Nate Coraor and
Carl Eberhard and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Aysam Guerler and
Jennifer Hillman{-}Jackson and
Gregory Von Kuster and
Eric Rasche and
Nicola Soranzo and
Nitesh Turaga and
James Taylor and
Anton Nekrutenko and
Jeremy Goecks},
title = {The Galaxy platform for accessible, reproducible and collaborative
biomedical analyses: 2016 update},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W3--W10},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw343},
doi = {10.1093/NAR/GKW343},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AfganBBBBCCCCEG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuccuruOPSSTUZF14,
author = {Gianmauro Cuccuru and
Massimiliano Orsini and
Andrea Pinna and
Andrea Sbardellati and
Nicola Soranzo and
Antonella Travaglione and
Paolo Uva and
Gianluigi Zanetti and
Giorgio Fotia},
title = {Orione, a web-based framework for {NGS} analysis in microbiology},
journal = {Bioinform.},
volume = {30},
number = {13},
pages = {1928--1929},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu135},
doi = {10.1093/BIOINFORMATICS/BTU135},
timestamp = {Mon, 08 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuccuruOPSSTUZF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeoPCLSAZ14,
author = {Simone Leo and
Luca Pireddu and
Gianmauro Cuccuru and
Luca Lianas and
Nicola Soranzo and
Enis Afgan and
Gianluigi Zanetti},
title = {BioBlend.objects: metacomputing with Galaxy},
journal = {Bioinform.},
volume = {30},
number = {19},
pages = {2816--2817},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu386},
doi = {10.1093/BIOINFORMATICS/BTU386},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeoPCLSAZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PiredduLSZ14,
author = {Luca Pireddu and
Simone Leo and
Nicola Soranzo and
Gianluigi Zanetti},
editor = {Pierre Baldi and
Wei Wang},
title = {A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive
bioinformatics in Galaxy},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {184--191},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649429},
doi = {10.1145/2649387.2649429},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/PiredduLSZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoranzoRIA12,
author = {Nicola Soranzo and
Fahimeh Ramezani and
Giovanni Iacono and
Claudio Altafini},
title = {Decompositions of large-scale biological systems based on dynamical
properties},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {76--83},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr620},
doi = {10.1093/BIOINFORMATICS/BTR620},
timestamp = {Thu, 31 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoranzoRIA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PinnaSHF11,
author = {Andrea Pinna and
Nicola Soranzo and
Ina Hoeschele and
Alberto de la Fuente},
title = {Simulating systems genetics data with SysGenSIM},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2459--2462},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr407},
doi = {10.1093/BIOINFORMATICS/BTR407},
timestamp = {Mon, 08 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PinnaSHF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoranzoA09,
author = {Nicola Soranzo and
Claudio Altafini},
title = {{ERNEST:} a toolbox for chemical reaction network theory},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2853--2854},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp513},
doi = {10.1093/BIOINFORMATICS/BTP513},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoranzoA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SoranzoZFA09,
author = {Nicola Soranzo and
Mattia Zampieri and
Lorenzo Farina and
Claudio Altafini},
title = {mRNA stability and the unfolding of gene expression in the long-period
yeast metabolic cycle},
journal = {{BMC} Syst. Biol.},
volume = {3},
pages = {18},
year = {2009},
url = {https://doi.org/10.1186/1752-0509-3-18},
doi = {10.1186/1752-0509-3-18},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SoranzoZFA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eucc/RamezaniISA09,
author = {Fahimeh Ramezani and
Giovanni Iacono and
Nicola Soranzo and
Claudio Altafini},
title = {On the distance to monotonicity of a biological network: {A} graph-theoretical
approach},
booktitle = {10th European Control Conference, {ECC} 2009, Budapest, Hungary, 23-26
August 2009},
pages = {1866--1871},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.23919/ECC.2009.7074675},
doi = {10.23919/ECC.2009.7074675},
timestamp = {Thu, 31 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eucc/RamezaniISA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZampieriSA08,
author = {Mattia Zampieri and
Nicola Soranzo and
Claudio Altafini},
title = {Discerning static and causal interactions in genome-wide reverse engineering
problems},
journal = {Bioinform.},
volume = {24},
number = {13},
pages = {1510--1515},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn220},
doi = {10.1093/BIOINFORMATICS/BTN220},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZampieriSA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/ZampieriSA08,
author = {Mattia Zampieri and
Nicola Soranzo and
Claudio Altafini},
title = {Modeling the genome-wide transient response to stimuli in yeast: Adaptation
through integral feedback},
booktitle = {Proceedings of the 47th {IEEE} Conference on Decision and Control,
{CDC} 2008, December 9-11, 2008, Canc{\'{u}}n, Mexico},
pages = {167--172},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/CDC.2008.4739180},
doi = {10.1109/CDC.2008.4739180},
timestamp = {Fri, 04 Mar 2022 13:27:23 +0100},
biburl = {https://dblp.org/rec/conf/cdc/ZampieriSA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoranzoBA07,
author = {Nicola Soranzo and
Ginestra Bianconi and
Claudio Altafini},
title = {Comparing association network algorithms for reverse engineering of
large-scale gene regulatory networks: synthetic versus real data},
journal = {Bioinform.},
volume = {23},
number = {13},
pages = {1640--1647},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm163},
doi = {10.1093/BIOINFORMATICS/BTM163},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoranzoBA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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