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ORCIDBibTeX records: Ie-Ming Shih
@article{DBLP:journals/cbm/YoussefCSWY16,
author = {Ibrahim Youssef and
Robert Clarke and
Ie{-}Ming Shih and
Yue Joseph Wang and
Guoqiang Yu},
title = {Biologically inspired survival analysis based on integrating gene
expression as mediator with genomic variants},
journal = {Comput. Biol. Medicine},
volume = {77},
pages = {231--239},
year = {2016},
url = {https://doi.org/10.1016/j.compbiomed.2016.08.020},
doi = {10.1016/J.COMPBIOMED.2016.08.020},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/YoussefCSWY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangGCCSZLXW15,
author = {Niya Wang and
Ting Gong and
Robert Clarke and
Lulu Chen and
Ie{-}Ming Shih and
Zhen Zhang and
Douglas A. Levine and
Jianhua Xuan and
Yue Joseph Wang},
title = {{UNDO:} a Bioconductor {R} package for unsupervised deconvolution
of mixed gene expressions in tumor samples},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {137--139},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu607},
doi = {10.1093/BIOINFORMATICS/BTU607},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangGCCSZLXW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TianZHCZSXHW15,
author = {Ye Tian and
Bai Zhang and
Eric P. Hoffman and
Robert Clarke and
Zhen Zhang and
Ie{-}Ming Shih and
Jianhua Xuan and
David M. Herrington and
Yue Joseph Wang},
title = {{KDDN:} an open-source Cytoscape app for constructing differential
dependency networks with significant rewiring},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {287--289},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu632},
doi = {10.1093/BIOINFORMATICS/BTU632},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TianZHCZSXHW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangHYSZCWFMWY14,
author = {Bai Zhang and
Xuchu Hou and
Xiguo Yuan and
Ie{-}Ming Shih and
Zhen Zhang and
Robert Clarke and
Roger R. Wang and
Yi Fu and
Subha Madhavan and
Yue Joseph Wang and
Guoqiang Yu},
title = {{AISAIC:} a software suite for accurate identification of significant
aberrations in cancers},
journal = {Bioinform.},
volume = {30},
number = {3},
pages = {431--433},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt693},
doi = {10.1093/BIOINFORMATICS/BTT693},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangHYSZCWFMWY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianZHCZSXHW14,
author = {Ye Tian and
Bai Zhang and
Eric P. Hoffman and
Robert Clarke and
Zhen Zhang and
Ie{-}Ming Shih and
Jianhua Xuan and
David M. Herrington and
Yue Joseph Wang},
title = {Knowledge-fused differential dependency network models for detecting
significant rewiring in biological networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {87},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0087-1},
doi = {10.1186/S12918-014-0087-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TianZHCZSXHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TianWZRPSCAYYCWZWA14,
author = {Ye Tian and
Sean S. Wang and
Zhen Zhang and
Olga C. Rodriguez and
Emanuel Petricoin III and
Ie{-}Ming Shih and
Daniel Chan and
Maria Avantaggiati and
Guoqiang Yu and
Shaozhen Ye and
Robert Clarke and
Chao Wang and
Bai Zhang and
Yue Joseph Wang and
Chris Albanese},
title = {Integration of Network Biology and Imaging to Study Cancer Phenotypes
and Responses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {11},
number = {6},
pages = {1009--1019},
year = {2014},
url = {https://doi.org/10.1109/TCBB.2014.2338304},
doi = {10.1109/TCBB.2014.2338304},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TianWZRPSCAYYCWZWA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/WangXSCW12,
author = {Chen Wang and
Jianhua Xuan and
Ie{-}Ming Shih and
Robert Clarke and
Yue Joseph Wang},
title = {Regulatory component analysis: {A} semi-blind extraction approach
to infer gene regulatory networks with imperfect biological knowledge},
journal = {Signal Process.},
volume = {92},
number = {8},
pages = {1902--1915},
year = {2012},
url = {https://doi.org/10.1016/j.sigpro.2011.11.028},
doi = {10.1016/J.SIGPRO.2011.11.028},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/WangXSCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/GuXWCWS12,
author = {Jinghua Gu and
Jianhua Xuan and
Chen Wang and
Li Chen and
Tian{-}Li Wang and
Ie{-}Ming Shih},
title = {Detecting aberrant signal transduction pathways from high-throughput
data using {GIST} algorithm},
booktitle = {2012 {IEEE} Symposium on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2012, San Diego, CA, USA, May 9-12,
2012},
pages = {267--274},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/CIBCB.2012.6217240},
doi = {10.1109/CIBCB.2012.6217240},
timestamp = {Wed, 16 Oct 2019 14:14:48 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/GuXWCWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gensips/HouYYZSZCM12,
author = {Xuchu Hou and
Guoqiang Yu and
Xiguo Yuan and
Bai Zhang and
Ie{-}Ming Shih and
Zhen Zhang and
Robert Clarke and
Subha Madhavan},
title = {Accurate identification of significant aberrations in contaminated
cancer genome},
booktitle = {Proceedings 2012 {IEEE} International Workshop on Genomic Signal Processing
and Statistics, GENSiPS 2012, Washington, DC, USA, December 2-4, 2012},
pages = {74--77},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/GENSIPS.2012.6507730},
doi = {10.1109/GENSIPS.2012.6507730},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gensips/HouYYZSZCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ChenXGWCZWS12,
author = {Li Chen and
Jianhua Xuan and
Jinghua Gu and
Yue Wang and
Zhen Zhang and
Tian{-}Li Wang and
Ie{-}Ming Shih},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Integrative Network Analysis to Identify Aberrant Pathway Networks
in Ovarian Cancer},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {31--42},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/chen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ChenXGWCZWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuLHSCHMXW11,
author = {Guoqiang Yu and
Huai Li and
Sook S. Ha and
Ie{-}Ming Shih and
Robert Clarke and
Eric P. Hoffman and
Subha Madhavan and
Jianhua Xuan and
Yue Joseph Wang},
title = {{PUGSVM:} a caBIG\({}^{\mbox{TM}}\) analytical tool for multiclass
gene selection and predictive classification},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {736--738},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq721},
doi = {10.1093/BIOINFORMATICS/BTQ721},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuLHSCHMXW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangTJLSMCHXHW11,
author = {Bai Zhang and
Ye Tian and
Lu Jin and
Huai Li and
Ie{-}Ming Shih and
Subha Madhavan and
Robert Clarke and
Eric P. Hoffman and
Jianhua Xuan and
Leena Hilakivi{-}Clarke and
Yue Joseph Wang},
title = {{DDN:} a caBIG\({}^{\mbox{{\textregistered}}}\) analytical tool for
differential network analysis},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1036--1038},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr052},
doi = {10.1093/BIOINFORMATICS/BTR052},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangTJLSMCHXHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuZBXSW11,
author = {Guoqiang Yu and
Bai Zhang and
G. Steven Bova and
Jianfeng Xu and
Ie{-}Ming Shih and
Yue Joseph Wang},
title = {{BACOM:} \emph{in silico} detection of genomic deletion types and
correction of normal cell contamination in copy number data},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1473--1480},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr183},
doi = {10.1093/BIOINFORMATICS/BTR183},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuZBXSW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TianZSW11,
author = {Ye Tian and
Bai Zhang and
Ie{-}Ming Shih and
Yue Joseph Wang},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Knowledge-guided differential dependency network learning for detecting
structural changes in biological networks},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {254--263},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147833},
doi = {10.1145/2147805.2147833},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/TianZSW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/GuWSWWCX11,
author = {Jinghua Gu and
Chen Wang and
Ie{-}Ming Shih and
Tian{-}Li Wang and
Yue Wang and
Robert Clarke and
Jianhua Xuan},
title = {{GIST:} {A} Gibbs sampler to identify intracellular signal transduction
pathways},
booktitle = {33rd Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2011, Boston, MA, USA, August
30 - Sept. 3, 2011},
pages = {2434--2437},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/IEMBS.2011.6090677},
doi = {10.1109/IEMBS.2011.6090677},
timestamp = {Wed, 01 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/embc/GuWSWWCX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfipm/FengYWSW10,
author = {Yuanjian Feng and
Guoqiang Yu and
Tian{-}Li Wang and
Ie{-}Ming Shih and
Yue Joseph Wang},
title = {Analysing {DNA} copy number changes using Fused Margin Regression},
journal = {Int. J. Funct. Informatics Pers. Medicine},
volume = {3},
number = {1},
pages = {3--15},
year = {2010},
url = {https://doi.org/10.1504/IJFIPM.2010.033242},
doi = {10.1504/IJFIPM.2010.033242},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijfipm/FengYWSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/YuFMXHCDSW10,
author = {Guoqiang Yu and
Yuanjian Feng and
David J. Miller and
Jianhua Xuan and
Eric P. Hoffman and
Robert Clarke and
Ben Davidson and
Ie{-}Ming Shih and
Yue Joseph Wang},
title = {Matched Gene Selection and Committee Classifier for Molecular Classification
of Heterogeneous Diseases},
journal = {J. Mach. Learn. Res.},
volume = {11},
pages = {2141--2167},
year = {2010},
url = {https://dl.acm.org/doi/10.5555/1756006.1859924},
doi = {10.5555/1756006.1859924},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/YuFMXHCDSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/ChenXWWSWZCH09,
author = {Li Chen and
Jianhua Xuan and
Chen Wang and
Yue Joseph Wang and
Ie{-}Ming Shih and
Tian{-}Li Wang and
Zhen Zhang and
Robert Clarke and
Eric P. Hoffman},
title = {Biomarker identification by knowledge-driven multilevel {ICA} and
motif analysis},
journal = {Int. J. Data Min. Bioinform.},
volume = {3},
number = {4},
pages = {365--381},
year = {2009},
url = {https://doi.org/10.1504/IJDMB.2009.029201},
doi = {10.1504/IJDMB.2009.029201},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijdmb/ChenXWWSWZCH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/YuZXSW09,
author = {Guoqiang Yu and
Bai Zhang and
Jianfeng Xu and
Ie{-}Ming Shih and
Yue Joseph Wang},
title = {Accurate Estimation of Genomic Deletions and Normal Cell Contamination
by Bayesian Analysis of Mixtures},
booktitle = {2009 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2009, Washington, DC, USA, November 1-4, 2009, Proceedings},
pages = {332--337},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/BIBM.2009.54},
doi = {10.1109/BIBM.2009.54},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/YuZXSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/FengYWSW09,
author = {Yuanjian Feng and
Guoqiang Yu and
Tian{-}Li Wang and
Ie{-}Ming Shih and
Yue Joseph Wang},
title = {Analyzing {DNA} Copy Number Changes Using Fused Margin Regression},
booktitle = {2009 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2009, Washington, DC, USA, November 1-4, 2009, Proceedings},
pages = {388--391},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/BIBM.2009.57},
doi = {10.1109/BIBM.2009.57},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/FengYWSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenXWSWZHC08,
author = {Li Chen and
Jianhua Xuan and
Chen Wang and
Ie{-}Ming Shih and
Yue Joseph Wang and
Zhen Zhang and
Eric P. Hoffman and
Robert Clarke},
title = {Knowledge-guided multi-scale independent component analysis for biomarker
identification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-416},
doi = {10.1186/1471-2105-9-416},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenXWSWZHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/ChenWSWZWCHX07,
author = {Li Chen and
Chen Wang and
Ie{-}Ming Shih and
Tian{-}Li Wang and
Zhen Zhang and
Yue Joseph Wang and
Robert Clarke and
Eric P. Hoffman and
Jianhua Xuan},
editor = {M. Arif Wani and
Mehmed M. Kantardzic and
Tao Li and
Ying Liu and
Lukasz A. Kurgan and
Jieping Ye and
Mitsunori Ogihara and
Seref Sagiroglu and
Xue{-}wen Chen and
Leif E. Peterson and
Khalid Hafeez},
title = {Biomarker Identification by Knowledge-Driven Multi-Level {ICA} and
Motif Analysis},
booktitle = {The Sixth International Conference on Machine Learning and Applications,
{ICMLA} 2007, Cincinnati, Ohio, USA, 13-15 December 2007},
pages = {560--566},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICMLA.2007.58},
doi = {10.1109/ICMLA.2007.58},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/ChenWSWZWCHX07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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