BibTeX records: Yonggang Shi

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@article{DBLP:journals/neuroimage/SarabiMJRWS24,
  author       = {Mona Sharifi Sarabi and
                  Samantha J. Ma and
                  Kay Jann and
                  John M. Ringman and
                  Danny J. J. Wang and
                  Yonggang Shi},
  title        = {Vessel density mapping of small cerebral vessels on 3D high resolution
                  black blood {MRI}},
  journal      = {NeuroImage},
  volume       = {286},
  pages        = {120504},
  year         = {2024},
  url          = {https://doi.org/10.1016/j.neuroimage.2023.120504},
  doi          = {10.1016/J.NEUROIMAGE.2023.120504},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/SarabiMJRWS24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/NieROGRS24,
  author       = {Xinyu Nie and
                  Jialiang Ruan and
                  Mar{\'{\i}}a Concepci{\'{o}}n Garc{\'{\i}}a Otaduy and
                  Lea Tenenholz Grinberg and
                  John M. Ringman and
                  Yonggang Shi},
  title        = {Surface-Based Probabilistic Fiber Tracking in Superficial White Matter},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {43},
  number       = {3},
  pages        = {1113--1124},
  year         = {2024},
  url          = {https://doi.org/10.1109/TMI.2023.3329451},
  doi          = {10.1109/TMI.2023.3329451},
  timestamp    = {Mon, 15 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/NieROGRS24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2405-13199,
  author       = {Lujia Zhong and
                  Shuo Huang and
                  Jiaxin Yue and
                  Jianwei Zhang and
                  Zhiwei Deng and
                  Wenhao Chi and
                  Yonggang Shi},
  title        = {TauAD: MRI-free Tau Anomaly Detection in {PET} Imaging via Conditioned
                  Diffusion Models},
  journal      = {CoRR},
  volume       = {abs/2405.13199},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2405.13199},
  doi          = {10.48550/ARXIV.2405.13199},
  eprinttype    = {arXiv},
  eprint       = {2405.13199},
  timestamp    = {Mon, 24 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2405-13199.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-13209,
  author       = {Shuo Huang and
                  Lujia Zhong and
                  Yonggang Shi},
  title        = {Diffusion Model-based {FOD} Restoration from High Distortion in dMRI},
  journal      = {CoRR},
  volume       = {abs/2406.13209},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2406.13209},
  doi          = {10.48550/ARXIV.2406.13209},
  eprinttype    = {arXiv},
  eprint       = {2406.13209},
  timestamp    = {Wed, 24 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2406-13209.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/XiaS23,
  author       = {Mingyang Xia and
                  Yonggang Shi},
  editor       = {Jonghye Woo and
                  Alessa Hering and
                  Wilson Silva and
                  Xiang Li and
                  Huazhu Fu and
                  Xiaofeng Liu and
                  Fangxu Xing and
                  Sanjay Purushotham and
                  Tejas Sudharshan Mathai and
                  Pritam Mukherjee and
                  Max De Grauw and
                  Regina Beets{-}Tan and
                  Valentina Corbetta and
                  Elmar Kotter and
                  Mauricio Reyes and
                  Christian F. Baumgartner and
                  Quanzheng Li and
                  Richard M. Leahy and
                  Bin Dong and
                  Hao Chen and
                  Yuankai Huo and
                  Jinglei Lv and
                  Xinxing Xu and
                  Xiaomeng Li and
                  Dwarikanath Mahapatra and
                  Li Cheng and
                  Caroline Petitjean and
                  Beno{\^{\i}}t Presles},
  title        = {A Groupwise Method for the Reconstruction of Hypergraph Representation
                  of Resting-State Functional Networks},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 Workshops - {MTSAIL} 2023, {LEAF} 2023, AI4Treat 2023, {MMMI}
                  2023, {REMIA} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver,
                  BC, Canada, October 8-12, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14394},
  pages        = {14--23},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-47425-5\_2},
  doi          = {10.1007/978-3-031-47425-5\_2},
  timestamp    = {Tue, 20 Aug 2024 07:54:43 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/XiaS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/NieS23,
  author       = {Xinyu Nie and
                  Yonggang Shi},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu E. Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {Flow-Based Geometric Interpolation of Fiber Orientation Distribution
                  Functions},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {VIII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14227},
  pages        = {46--55},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43993-3\_5},
  doi          = {10.1007/978-3-031-43993-3\_5},
  timestamp    = {Tue, 13 Aug 2024 14:18:07 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/NieS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangS23,
  author       = {Jianwei Zhang and
                  Yonggang Shi},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu E. Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {Personalized Patch-Based Normality Assessment of Brain Atrophy in
                  Alzheimer's Disease},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {V}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14224},
  pages        = {55--62},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43904-9\_6},
  doi          = {10.1007/978-3-031-43904-9\_6},
  timestamp    = {Tue, 13 Aug 2024 14:18:07 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HuangZS23,
  author       = {Shuo Huang and
                  Lujia Zhong and
                  Yonggang Shi},
  editor       = {Muge Karaman and
                  Remika Mito and
                  Elizabeth Powell and
                  Francois Rheault and
                  Stefan Winzeck},
  title        = {Automated Mapping of Residual Distortion Severity in Diffusion {MRI}},
  booktitle    = {Computational Diffusion {MRI} - 14th International Workshop, {CDMRI}
                  2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada,
                  October 8, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14328},
  pages        = {58--69},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-47292-3\_6},
  doi          = {10.1007/978-3-031-47292-3\_6},
  timestamp    = {Thu, 22 Feb 2024 20:44:55 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/HuangZS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiNFS23,
  author       = {Yuan Li and
                  Xinyu Nie and
                  Yao Fu and
                  Yonggang Shi},
  editor       = {Muge Karaman and
                  Remika Mito and
                  Elizabeth Powell and
                  Francois Rheault and
                  Stefan Winzeck},
  title        = {FASSt: Filtering via Symmetric Autoencoder for Spherical Superficial
                  White Matter Tractography},
  booktitle    = {Computational Diffusion {MRI} - 14th International Workshop, {CDMRI}
                  2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada,
                  October 8, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14328},
  pages        = {129--139},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-47292-3\_12},
  doi          = {10.1007/978-3-031-47292-3\_12},
  timestamp    = {Thu, 22 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/LiNFS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/YueS23,
  author       = {Jiaxin Yue and
                  Yonggang Shi},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu E. Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {Uncovering Heterogeneity in Alzheimer's Disease from Graphical Modeling
                  of the Tau Spatiotemporal Topography},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {V}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14224},
  pages        = {262--271},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43904-9\_26},
  doi          = {10.1007/978-3-031-43904-9\_26},
  timestamp    = {Thu, 05 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/YueS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DengXZZWYS23,
  author       = {Zhiwei Deng and
                  Songnan Xu and
                  Jianwei Zhang and
                  Jiong Zhang and
                  Danny J. J. Wang and
                  Lirong Yan and
                  Yonggang Shi},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu E. Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {Shape-Aware 3D Small Vessel Segmentation with Local Contrast Guided
                  Attention},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {IV}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14223},
  pages        = {354--363},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43901-8\_34},
  doi          = {10.1007/978-3-031-43901-8\_34},
  timestamp    = {Tue, 13 Aug 2024 14:18:07 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DengXZZWYS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/PoratSYSDWDBLKM22,
  author       = {Shai Porat and
                  Francesca Sibilia and
                  Josephine Yoon and
                  Yonggang Shi and
                  Martin J. Dahl and
                  Markus Werkle{-}Bergner and
                  Sandra D{\"{u}}zel and
                  Nils Christian Bodammer and
                  Ulman Lindenberger and
                  Simone K{\"{u}}hn and
                  Mara Mather},
  title        = {Age differences in diffusivity in the locus coeruleus and its ascending
                  noradrenergic tract},
  journal      = {NeuroImage},
  volume       = {251},
  pages        = {119022},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.neuroimage.2022.119022},
  doi          = {10.1016/J.NEUROIMAGE.2022.119022},
  timestamp    = {Fri, 01 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/PoratSYSDWDBLKM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/TaskinQSCHSMSA22,
  author       = {Huseyin O. Taskin and
                  Yuchuan Qiao and
                  Valerie J. Sydnor and
                  Matthew Cieslak and
                  Edda B. Haggerty and
                  Theodore D. Satterthwaite and
                  Jessica I. W. Morgan and
                  Yonggang Shi and
                  Geoffrey Karl Aguirre},
  title        = {Retinal ganglion cell endowment is correlated with optic tract fiber
                  cross section, not density},
  journal      = {NeuroImage},
  volume       = {260},
  pages        = {119495},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.neuroimage.2022.119495},
  doi          = {10.1016/J.NEUROIMAGE.2022.119495},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/TaskinQSCHSMSA22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/QiaoS22,
  author       = {Yuchuan Qiao and
                  Yonggang Shi},
  title        = {Unsupervised Deep Learning for FOD-Based Susceptibility Distortion
                  Correction in Diffusion {MRI}},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {41},
  number       = {5},
  pages        = {1165--1175},
  year         = {2022},
  url          = {https://doi.org/10.1109/TMI.2021.3134496},
  doi          = {10.1109/TMI.2021.3134496},
  timestamp    = {Wed, 18 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/QiaoS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/XiaS22,
  author       = {Yihao Xia and
                  Yonggang Shi},
  editor       = {Linwei Wang and
                  Qi Dou and
                  P. Thomas Fletcher and
                  Stefanie Speidel and
                  Shuo Li},
  title        = {Personalized dMRI Harmonization on Cortical Surface},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2022 - 25th International Conference, Singapore, September 18-22,
                  2022, Proceedings, Part {VI}},
  series       = {Lecture Notes in Computer Science},
  volume       = {13436},
  pages        = {717--725},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-16446-0\_68},
  doi          = {10.1007/978-3-031-16446-0\_68},
  timestamp    = {Tue, 13 Dec 2022 14:39:06 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/XiaS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/DuffyZSMWSTK21,
  author       = {Ben A. Duffy and
                  Lu Zhao and
                  Farshid Sepehrband and
                  Joyce Min and
                  Danny J. J. Wang and
                  Yonggang Shi and
                  Arthur W. Toga and
                  Hosung Kim},
  title        = {Retrospective motion artifact correction of structural {MRI} images
                  using deep learning improves the quality of cortical surface reconstructions},
  journal      = {NeuroImage},
  volume       = {230},
  pages        = {117756},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.neuroimage.2021.117756},
  doi          = {10.1016/J.NEUROIMAGE.2021.117756},
  timestamp    = {Sun, 16 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/DuffyZSMWSTK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SchillingRPHNYG21,
  author       = {Kurt G. Schilling and
                  Fran{\c{c}}ois Rheault and
                  Laurent Petit and
                  Colin B. Hansen and
                  Vishwesh Nath and
                  Fang{-}Cheng Yeh and
                  Gabriel Girard and
                  Muhamed Barakovic and
                  Jonathan Rafael{-}Patino and
                  Thomas Yu and
                  Elda Fischi Gomez and
                  Marco Pizzolato and
                  Mario Ocampo{-}Pineda and
                  Simona Schiavi and
                  Erick Jorge Canales{-}Rodr{\'{\i}}guez and
                  Alessandro Daducci and
                  Cristina Granziera and
                  Giorgio M. Innocenti and
                  Jean{-}Philippe Thiran and
                  Laura Mancini and
                  Stephen J. Wastling and
                  Sirio Cocozza and
                  Maria Petracca and
                  Giuseppe Pontillo and
                  Matteo Mancini and
                  Sjoerd B. Vos and
                  Vejay N. Vakharia and
                  John S. Duncan and
                  Helena Melero and
                  Lidia Manzanedo and
                  Emilio Sanz{-}Morales and
                  {\'{A}}ngel Pe{\~{n}}a{-}Meli{\'{a}}n and
                  Fernando Calamante and
                  Arnaud Attye and
                  Ryan P. Cabeen and
                  Laura Korobova and
                  Arthur W. Toga and
                  Anupa Ambili Vijayakumari and
                  Drew Parker and
                  Ragini Verma and
                  Ahmed M. Radwan and
                  Stefan Sunaert and
                  Louise Emsell and
                  Alberto De Luca and
                  Alexander Leemans and
                  Claude J. Bajada and
                  Hamied A. Haroon and
                  Hojjatollah Azadbakht and
                  Maxime Chamberland and
                  Sila Genc and
                  Chantal M. W. Tax and
                  Ping Hong Yeh and
                  Rujirutana Srikanchana and
                  Colin D. Mcknight and
                  Joseph Yuan{-}Mou Yang and
                  Jian Chen and
                  Claire E. Kelly and
                  Chun{-}Hung Yeh and
                  J{\'{e}}r{\^{o}}me Cochereau and
                  Jerome J. Maller and
                  Thomas Welton and
                  Fabien Almairac and
                  Kiran K. Seunarine and
                  Chris A. Clark and
                  Fan Zhang and
                  Nikos Makris and
                  Alexandra J. Golby and
                  Yogesh Rathi and
                  Lauren J. O'Donnell and
                  Yihao Xia and
                  Dogu Baran Aydogan and
                  Yonggang Shi and
                  Francisco Guerreiro Fernandes and
                  Mathijs Raemaekers and
                  Shaun Warrington and
                  Stijn Michielse and
                  Alonso Ramirez{-}Manzanares and
                  Luis Concha and
                  Ram{\'{o}}n Aranda and
                  Mariano Rivera Meraz and
                  Garikoitz Lerma{-}Usabiaga and
                  Lucas Roitman and
                  Lucius S. Fekonja and
                  Navona Calarco and
                  Michael Joseph and
                  Hajer Nakua and
                  Aristotle N. Voineskos and
                  Philippe Karan and
                  Gabrielle Grenier and
                  Jon Haitz Legarreta and
                  Nagesh Adluru and
                  Veena A. Nair and
                  Vivek Prabhakaran and
                  Andrew L. Alexander and
                  Koji Kamagata and
                  Yuya Saito and
                  Wataru Uchida and
                  Christina Andica and
                  Masahiro Abe and
                  Roza G. Bayrak and
                  Claudia A. M. Gandini Wheeler{-}Kingshott and
                  Egidio D'Angelo and
                  Fulvia Palesi and
                  Giovanni Savini and
                  Nicol{\`{o}} Rolandi and
                  Pamela Guevara and
                  Josselin Houenou and
                  Narciso L{\'{o}}pez{-}L{\'{o}}pez and
                  Jean{-}Fran{\c{c}}ois Mangin and
                  Cyril Poupon and
                  Claudio Rom{\'{a}}n and
                  Andrea V{\'{a}}zquez and
                  Chiara Maffei and
                  Mavilde Arantes and
                  Jos{\'{e}} Paulo Andrade and
                  Susana Maria Silva and
                  Vince D. Calhoun and
                  Eduardo Caverzasi and
                  Simone Sacco and
                  Michael Lauricella and
                  Franco Pestilli and
                  Daniel Bullock and
                  Yang Zhan and
                  Edith Brignoni{-}P{\'{e}}rez and
                  Catherine Lebel and
                  Jess E Reynolds and
                  Igor Nestrasil and
                  Ren{\'{e}} Labounek and
                  Christophe Lenglet and
                  Amy Paulson and
                  Stefania Aulicka and
                  Sarah R. Heilbronner and
                  Katja Heuer and
                  Bramsh Qamar Chandio and
                  Javier Guaje and
                  Wei Tang and
                  Eleftherios Garyfallidis and
                  Rajikha Raja and
                  Adam W. Anderson and
                  Bennett A. Landman and
                  Maxime Descoteaux},
  title        = {Tractography dissection variability: What happens when 42 groups dissect
                  14 white matter bundles on the same dataset?},
  journal      = {NeuroImage},
  volume       = {243},
  pages        = {118502},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.neuroimage.2021.118502},
  doi          = {10.1016/J.NEUROIMAGE.2021.118502},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/SchillingRPHNYG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/AydoganS21,
  author       = {Dogu Baran Aydogan and
                  Yonggang Shi},
  title        = {Parallel Transport Tractography},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {40},
  number       = {2},
  pages        = {635--647},
  year         = {2021},
  url          = {https://doi.org/10.1109/TMI.2020.3034038},
  doi          = {10.1109/TMI.2020.3034038},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/AydoganS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csia/Shi21b,
  author       = {Yonggang Shi},
  editor       = {Zheng Xu and
                  Reza M. Parizi and
                  Octavio Loyola{-}Gonz{\'{a}}lez and
                  Xiaolu Zhang},
  title        = {Application of Random Simulation Algorithm in Physical Education Teaching
                  Evaluation},
  booktitle    = {Cyber Security Intelligence and Analytics - 2021 International Conference
                  on Cyber Security Intelligence and Analytics {(CSIA} 2021), Shenyang,
                  China, 19-20 March, 2021, Volume 2},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {1343},
  pages        = {696--703},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-69999-4\_95},
  doi          = {10.1007/978-3-030-69999-4\_95},
  timestamp    = {Fri, 19 Mar 2021 15:42:57 +0100},
  biburl       = {https://dblp.org/rec/conf/csia/Shi21b.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DengZS21,
  author       = {Zhiwei Deng and
                  Jiong Zhang and
                  Yonggang Shi},
  editor       = {Ahmed Abdulkadir and
                  Seyed Mostafa Kia and
                  Mohamad Habes and
                  Vinod Kumar and
                  Jane Maryam Rondina and
                  Chantal M. W. Tax and
                  Thomas Wolfers},
  title        = {Dynamic Sub-graph Learning for Patch-Based Cortical Folding Classification},
  booktitle    = {Machine Learning in Clinical Neuroimaging - 4th International Workshop,
                  {MLCN} 2021, Held in Conjunction with {MICCAI} 2021, Strasbourg, France,
                  September 27, 2021, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13001},
  pages        = {53--62},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87586-2\_6},
  doi          = {10.1007/978-3-030-87586-2\_6},
  timestamp    = {Tue, 10 Oct 2023 14:59:33 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DengZS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangS21,
  author       = {Jiong Zhang and
                  Yonggang Shi},
  editor       = {Marleen de Bruijne and
                  Philippe C. Cattin and
                  St{\'{e}}phane Cotin and
                  Nicolas Padoy and
                  Stefanie Speidel and
                  Yefeng Zheng and
                  Caroline Essert},
  title        = {Personalized Matching and Analysis of Cortical Folding Patterns via
                  Patch-Based Intrinsic Brain Mapping},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2021 - 24th International Conference, Strasbourg, France, September
                  27 - October 1, 2021, Proceedings, Part {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12907},
  pages        = {710--720},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87234-2\_67},
  doi          = {10.1007/978-3-030-87234-2\_67},
  timestamp    = {Tue, 21 Dec 2021 17:19:23 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/XuGSZTLTZGLTL20,
  author       = {Feifei Xu and
                  Xinting Ge and
                  Yonggang Shi and
                  Zhonghe Zhang and
                  Yuchun Tang and
                  Xiangtao Lin and
                  Gaojun Teng and
                  Fengchao Zang and
                  Nuonan Gao and
                  Haihong Liu and
                  Arthur W. Toga and
                  Shuwei Liu},
  title        = {Morphometric development of the human fetal cerebellum during the
                  early second trimester},
  journal      = {NeuroImage},
  volume       = {207},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.neuroimage.2019.116372},
  doi          = {10.1016/J.NEUROIMAGE.2019.116372},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/XuGSZTLTZGLTL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/XiaS20,
  author       = {Yihao Xia and
                  Yonggang Shi},
  title        = {Groupwise track filtering via iterative message passing and pruning},
  journal      = {NeuroImage},
  volume       = {221},
  pages        = {117147},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.neuroimage.2020.117147},
  doi          = {10.1016/J.NEUROIMAGE.2020.117147},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/XiaS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SunTQGMRS20,
  author       = {Wei Sun and
                  Yuchun Tang and
                  Yuchuan Qiao and
                  Xinting Ge and
                  Mara Mather and
                  John M. Ringman and
                  Yonggang Shi},
  title        = {A probabilistic atlas of locus coeruleus pathways to transentorhinal
                  cortex for connectome imaging in Alzheimer's disease},
  journal      = {NeuroImage},
  volume       = {223},
  pages        = {117301},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.neuroimage.2020.117301},
  doi          = {10.1016/J.NEUROIMAGE.2020.117301},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/SunTQGMRS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/SarabiKZKGQKS20,
  author       = {Mona Sharifi Sarabi and
                  Maziyar M. Khansari and
                  Jiong Zhang and
                  Sam Kushner{-}Lenhoff and
                  Jin{-}Kyu Gahm and
                  Yuchuan Qiao and
                  Amir H. Kashani and
                  Yonggang Shi},
  title        = {3D Retinal Vessel Density Mapping With OCT-Angiography},
  journal      = {{IEEE} J. Biomed. Health Informatics},
  volume       = {24},
  number       = {12},
  pages        = {3466--3479},
  year         = {2020},
  url          = {https://doi.org/10.1109/JBHI.2020.3023308},
  doi          = {10.1109/JBHI.2020.3023308},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/titb/SarabiKZKGQKS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/KhansariZQGSKS20,
  author       = {Maziyar M. Khansari and
                  Jiong Zhang and
                  Yuchuan Qiao and
                  Jin{-}Kyu Gahm and
                  Mona Sharifi Sarabi and
                  Amir H. Kashani and
                  Yonggang Shi},
  title        = {Automated Deformation-Based Analysis of 3D Optical Coherence Tomography
                  in Diabetic Retinopathy},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {39},
  number       = {1},
  pages        = {236--245},
  year         = {2020},
  url          = {https://doi.org/10.1109/TMI.2019.2924452},
  doi          = {10.1109/TMI.2019.2924452},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/KhansariZQGSKS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ZhangQSKGKS20,
  author       = {Jiong Zhang and
                  Yuchuan Qiao and
                  Mona Sharifi Sarabi and
                  Maziyar M. Khansari and
                  Jin{-}Kyu Gahm and
                  Amir H. Kashani and
                  Yonggang Shi},
  title        = {3D Shape Modeling and Analysis of Retinal Microvasculature in OCT-Angiography
                  Images},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {39},
  number       = {5},
  pages        = {1335--1346},
  year         = {2020},
  url          = {https://doi.org/10.1109/TMI.2019.2948867},
  doi          = {10.1109/TMI.2019.2948867},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ZhangQSKGKS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ZhaoZPZSXZSQLL20,
  author       = {Yitian Zhao and
                  Jiong Zhang and
                  Ella Pereira and
                  Yalin Zheng and
                  Pan Su and
                  Jianyang Xie and
                  Yifan Zhao and
                  Yonggang Shi and
                  Hong Qi and
                  Jiang Liu and
                  Yonghuai Liu},
  title        = {Automated Tortuosity Analysis of Nerve Fibers in Corneal Confocal
                  Microscopy},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {39},
  number       = {9},
  pages        = {2725--2737},
  year         = {2020},
  url          = {https://doi.org/10.1109/TMI.2020.2974499},
  doi          = {10.1109/TMI.2020.2974499},
  timestamp    = {Wed, 11 Sep 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ZhaoZPZSXZSQLL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ZhaoZPZSXZSQLL20a,
  author       = {Yitian Zhao and
                  Jiong Zhang and
                  Ella Pereira and
                  Yalin Zheng and
                  Pan Su and
                  Jianyang Xie and
                  Yifan Zhao and
                  Yonggang Shi and
                  Hong Qi and
                  Jiang Liu and
                  Yonghuai Liu},
  title        = {Corrections to "Automated Tortuosity Analysis of Nerve Fibers
                  in Corneal Confocal Microscopy"},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {39},
  number       = {11},
  pages        = {3758},
  year         = {2020},
  url          = {https://doi.org/10.1109/TMI.2020.3023201},
  doi          = {10.1109/TMI.2020.3023201},
  timestamp    = {Wed, 11 Sep 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ZhaoZPZSXZSQLL20a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/QiaoS20,
  author       = {Yuchuan Qiao and
                  Yonggang Shi},
  editor       = {Anne L. Martel and
                  Purang Abolmaesumi and
                  Danail Stoyanov and
                  Diana Mateus and
                  Maria A. Zuluaga and
                  S. Kevin Zhou and
                  Daniel Racoceanu and
                  Leo Joskowicz},
  title        = {Unsupervised Deep Learning for Susceptibility Distortion Correction
                  in Connectome Imaging},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
                  Proceedings, Part {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12267},
  pages        = {302--310},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59728-3\_30},
  doi          = {10.1007/978-3-030-59728-3\_30},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/QiaoS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SchillingNHPBGN19,
  author       = {Kurt G. Schilling and
                  Vishwesh Nath and
                  Colin B. Hansen and
                  Prasanna Parvathaneni and
                  Justin A. Blaber and
                  Yurui Gao and
                  Peter Neher and
                  Dogu Baran Aydogan and
                  Yonggang Shi and
                  Mario Ocampo{-}Pineda and
                  Simona Schiavi and
                  Alessandro Daducci and
                  Gabriel Girard and
                  Muhamed Barakovic and
                  Jonathan Rafael{-}Patino and
                  David Romascano and
                  Ga{\"{e}}tan Rensonnet and
                  Marco Pizzolato and
                  Bennett A. Landman},
  title        = {Limits to anatomical accuracy of diffusion tractography using modern
                  approaches},
  journal      = {NeuroImage},
  volume       = {185},
  pages        = {1--11},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.10.029},
  doi          = {10.1016/J.NEUROIMAGE.2018.10.029},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/SchillingNHPBGN19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/MaSYSCYJTSW19,
  author       = {Samantha J. Ma and
                  Mona Sharifi Sarabi and
                  Lirong Yan and
                  Xingfeng Shao and
                  Yue Chen and
                  Qi Yang and
                  Kay Jann and
                  Arthur W. Toga and
                  Yonggang Shi and
                  Danny J. J. Wang},
  title        = {Characterization of lenticulostriate arteries with high resolution
                  black-blood T1-weighted turbo spin echo with variable flip angles
                  at 3 and 7{\unicode{8239}}Tesla},
  journal      = {NeuroImage},
  volume       = {199},
  pages        = {184--193},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.neuroimage.2019.05.065},
  doi          = {10.1016/J.NEUROIMAGE.2019.05.065},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/MaSYSCYJTSW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/QiaoSS19,
  author       = {Yuchuan Qiao and
                  Wei Sun and
                  Yonggang Shi},
  title        = {FOD-based registration for susceptibility distortion correction in
                  brainstem connectome imaging},
  journal      = {NeuroImage},
  volume       = {202},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.neuroimage.2019.116164},
  doi          = {10.1016/J.NEUROIMAGE.2019.116164},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/QiaoSS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/WangS19,
  author       = {Junyan Wang and
                  Yonggang Shi},
  editor       = {Albert C. S. Chung and
                  James C. Gee and
                  Paul A. Yushkevich and
                  Siqi Bao},
  title        = {A Fast Fiber k-Nearest-Neighbor Algorithm with Application to Group-Wise
                  White Matter Topography Analysis},
  booktitle    = {Information Processing in Medical Imaging - 26th International Conference,
                  {IPMI} 2019, Hong Kong, China, June 2-7, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11492},
  pages        = {332--344},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-20351-1\_25},
  doi          = {10.1007/978-3-030-20351-1\_25},
  timestamp    = {Wed, 22 May 2019 11:15:35 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/WangS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangKS19,
  author       = {Jiong Zhang and
                  Amir H. Kashani and
                  Yonggang Shi},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {3D Surface-Based Geometric and Topological Quantification of Retinal
                  Microvasculature in OCT-Angiography via Reeb Analysis},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11764},
  pages        = {57--65},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32239-7\_7},
  doi          = {10.1007/978-3-030-32239-7\_7},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangKS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GahmS19,
  author       = {Jin{-}Kyu Gahm and
                  Yonggang Shi},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Surface-Based Tracking of U-Fibers in the Superficial White Matter},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11766},
  pages        = {538--546},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32248-9\_60},
  doi          = {10.1007/978-3-030-32248-9\_60},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/GahmS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/NieS19,
  author       = {Xinyu Nie and
                  Yonggang Shi},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Topographic Filtering of Tractograms as Vector Field Flows},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11766},
  pages        = {564--572},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32248-9\_63},
  doi          = {10.1007/978-3-030-32248-9\_63},
  timestamp    = {Thu, 10 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/NieS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PangLSL18,
  author       = {Fengqian Pang and
                  Heng Li and
                  Yonggang Shi and
                  Zhiwen Liu},
  title        = {Computational Analysis of Cell Dynamics in Videos with Hierarchical-Pooled
                  Deep-Convolutional Features},
  journal      = {J. Comput. Biol.},
  volume       = {25},
  number       = {8},
  pages        = {934--953},
  year         = {2018},
  url          = {https://doi.org/10.1089/cmb.2018.0023},
  doi          = {10.1089/CMB.2018.0023},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/PangLSL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/GahmS18,
  author       = {Jin{-}Kyu Gahm and
                  Yonggang Shi},
  title        = {Riemannian metric optimization on surfaces {(RMOS)} for intrinsic
                  brain mapping in the Laplace-Beltrami embedding space},
  journal      = {Medical Image Anal.},
  volume       = {46},
  pages        = {189--201},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.media.2018.03.004},
  doi          = {10.1016/J.MEDIA.2018.03.004},
  timestamp    = {Mon, 24 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/GahmS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/LiGST18,
  author       = {Junning Li and
                  Jin{-}Kyu Gahm and
                  Yonggang Shi and
                  Arthur W. Toga},
  title        = {Topological false discovery rates for brain mapping based on signal
                  height},
  journal      = {NeuroImage},
  volume       = {167},
  pages        = {478--487},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2016.09.045},
  doi          = {10.1016/J.NEUROIMAGE.2016.09.045},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/LiGST18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/TangSTRS18,
  author       = {Yuchun Tang and
                  Wei Sun and
                  Arthur W. Toga and
                  John M. Ringman and
                  Yonggang Shi},
  title        = {A probabilistic atlas of human brainstem pathways based on connectome
                  imaging data},
  journal      = {NeuroImage},
  volume       = {169},
  pages        = {227--239},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2017.12.042},
  doi          = {10.1016/J.NEUROIMAGE.2017.12.042},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/TangSTRS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/AydoganS18,
  author       = {Dogu Baran Aydogan and
                  Yonggang Shi},
  title        = {Tracking and validation techniques for topographically organized tractography},
  journal      = {NeuroImage},
  volume       = {181},
  pages        = {64--84},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.06.071},
  doi          = {10.1016/J.NEUROIMAGE.2018.06.071},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/AydoganS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/WangAVTS18,
  author       = {Junyan Wang and
                  Dogu Baran Aydogan and
                  Rohit Varma and
                  Arthur W. Toga and
                  Yonggang Shi},
  title        = {Modeling topographic regularity in structural brain connectivity with
                  application to tractogram filtering},
  journal      = {NeuroImage},
  volume       = {183},
  pages        = {87--98},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.07.068},
  doi          = {10.1016/J.NEUROIMAGE.2018.07.068},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/WangAVTS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/ZhangBCBSPSDR18,
  author       = {Jiong Zhang and
                  Erik J. Bekkers and
                  Da Chen and
                  Tos T. J. M. Berendschot and
                  Jan Schouten and
                  Josien P. W. Pluim and
                  Yonggang Shi and
                  Behdad Dashtbozorg and
                  Bart M. ter Haar Romeny},
  title        = {Reconnection of Interrupted Curvilinear Structures via Cortically
                  Inspired Completion for Ophthalmologic Images},
  journal      = {{IEEE} Trans. Biomed. Eng.},
  volume       = {65},
  number       = {5},
  pages        = {1151--1165},
  year         = {2018},
  url          = {https://doi.org/10.1109/TBME.2017.2787025},
  doi          = {10.1109/TBME.2017.2787025},
  timestamp    = {Wed, 02 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tbe/ZhangBCBSPSDR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/QiaoSS18,
  author       = {Yuchuan Qiao and
                  Wei Sun and
                  Yonggang Shi},
  editor       = {Guorong Wu and
                  Islem Rekik and
                  Markus D. Schirmer and
                  Ai Wern Chung and
                  Brent C. Munsell},
  title        = {FOD-Based Registration for Susceptibility Distortion Correction in
                  Connectome Imaging},
  booktitle    = {Connectomics in NeuroImaging - Second International Workshop, {CNI}
                  2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September
                  20, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11083},
  pages        = {11--19},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00755-3\_2},
  doi          = {10.1007/978-3-030-00755-3\_2},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/QiaoSS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/WangS18,
  author       = {Junyan Wang and
                  Yonggang Shi},
  editor       = {Guorong Wu and
                  Islem Rekik and
                  Markus D. Schirmer and
                  Ai Wern Chung and
                  Brent C. Munsell},
  title        = {{GIFE:} Efficient and Robust Group-Wise Isometric Fiber Embedding},
  booktitle    = {Connectomics in NeuroImaging - Second International Workshop, {CNI}
                  2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September
                  20, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11083},
  pages        = {20--28},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00755-3\_3},
  doi          = {10.1007/978-3-030-00755-3\_3},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/WangS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GahmTS18,
  author       = {Jin{-}Kyu Gahm and
                  Yuchun Tang and
                  Yonggang Shi},
  editor       = {Alejandro F. Frangi and
                  Julia A. Schnabel and
                  Christos Davatzikos and
                  Carlos Alberola{-}L{\'{o}}pez and
                  Gabor Fichtinger},
  title        = {Patch-Based Mapping of Transentorhinal Cortex with a Distributed Atlas},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2018 - 21st International Conference, Granada, Spain, September 16-20,
                  2018, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11072},
  pages        = {689--697},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00931-1\_79},
  doi          = {10.1007/978-3-030-00931-1\_79},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GahmTS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/ChenLTLSZ17,
  author       = {Xinjian Chen and
                  Shuo Li and
                  Emanuele Trucco and
                  Jimmy Jiang Liu and
                  Yonggang Shi and
                  Beiji Zou},
  title        = {Preface},
  journal      = {Comput. Medical Imaging Graph.},
  volume       = {55},
  pages        = {1},
  year         = {2017},
  url          = {https://doi.org/10.1016/j.compmedimag.2016.12.001},
  doi          = {10.1016/J.COMPMEDIMAG.2016.12.001},
  timestamp    = {Tue, 28 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmig/ChenLTLSZ17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/LiLPS17,
  author       = {Heng Li and
                  Zhiwen Liu and
                  Fengqian Pang and
                  Yonggang Shi},
  title        = {Characterization of single cell dynamic morphology by local deformation
                  pattern modeling},
  booktitle    = {2017 39th Annual International Conference of the {IEEE} Engineering
                  in Medicine and Biology Society (EMBC), Jeju Island, South Korea,
                  July 11-15, 2017},
  pages        = {329--332},
  publisher    = {{IEEE}},
  year         = {2017},
  url          = {https://doi.org/10.1109/EMBC.2017.8036829},
  doi          = {10.1109/EMBC.2017.8036829},
  timestamp    = {Wed, 16 Oct 2019 14:14:50 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/LiLPS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/LiLPS17a,
  author       = {Heng Li and
                  Zhiwen Liu and
                  Fengqian Pang and
                  Yonggang Shi},
  title        = {Cell dynamic morphology analysis by deep convolutional features},
  booktitle    = {2017 39th Annual International Conference of the {IEEE} Engineering
                  in Medicine and Biology Society (EMBC), Jeju Island, South Korea,
                  July 11-15, 2017},
  pages        = {2700--2703},
  publisher    = {{IEEE}},
  year         = {2017},
  url          = {https://doi.org/10.1109/EMBC.2017.8037414},
  doi          = {10.1109/EMBC.2017.8037414},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/embc/LiLPS17a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/WangAVTS17,
  author       = {Junyan Wang and
                  Dogu Baran Aydogan and
                  Rohit Varma and
                  Arthur W. Toga and
                  Yonggang Shi},
  editor       = {Marc Niethammer and
                  Martin Styner and
                  Stephen R. Aylward and
                  Hongtu Zhu and
                  Ipek Oguz and
                  Pew{-}Thian Yap and
                  Dinggang Shen},
  title        = {Topographic Regularity for Tract Filtering in Brain Connectivity},
  booktitle    = {Information Processing in Medical Imaging - 25th International Conference,
                  {IPMI} 2017, Boone, NC, USA, June 25-30, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10265},
  pages        = {263--274},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59050-9\_21},
  doi          = {10.1007/978-3-319-59050-9\_21},
  timestamp    = {Tue, 14 May 2019 10:00:52 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/WangAVTS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GahmS17,
  author       = {Jin{-}Kyu Gahm and
                  Yonggang Shi},
  editor       = {Maxime Descoteaux and
                  Lena Maier{-}Hein and
                  Alfred M. Franz and
                  Pierre Jannin and
                  D. Louis Collins and
                  Simon Duchesne},
  title        = {Holistic Mapping of Striatum Surfaces in the Laplace-Beltrami Embedding
                  Space},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2017 - 20th International Conference, Quebec City, QC, Canada, September
                  11-13, 2017, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10433},
  pages        = {21--30},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-66182-7\_3},
  doi          = {10.1007/978-3-319-66182-7\_3},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GahmS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SunLS17,
  author       = {Wei Sun and
                  Junling Li and
                  Yonggang Shi},
  editor       = {Guorong Wu and
                  Paul J. Laurienti and
                  Leonardo Bonilha and
                  Brent C. Munsell},
  title        = {A Whole-Brain Reconstruction Approach for {FOD} Modeling from Multi-Shell
                  Diffusion {MRI}},
  booktitle    = {Connectomics in NeuroImaging - First International Workshop, {CNI}
                  2017, Held in Conjunction with {MICCAI} 2017, Quebec City, QC, Canada,
                  September 14, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10511},
  pages        = {152--160},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67159-8\_18},
  doi          = {10.1007/978-3-319-67159-8\_18},
  timestamp    = {Mon, 30 May 2022 12:59:59 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/SunLS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/WangS17,
  author       = {Junyan Wang and
                  Yonggang Shi},
  editor       = {Maxime Descoteaux and
                  Lena Maier{-}Hein and
                  Alfred M. Franz and
                  Pierre Jannin and
                  D. Louis Collins and
                  Simon Duchesne},
  title        = {Kernel-Regularized {ICA} for Computing Functional Topography from
                  Resting-State fMRI},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2017 - 20th International Conference, Quebec City, QC, Canada, September
                  11-13, 2017, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10433},
  pages        = {373--381},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-66182-7\_43},
  doi          = {10.1007/978-3-319-66182-7\_43},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/WangS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SunAS17,
  author       = {Wei Sun and
                  Lilyana Amezcua and
                  Yonggang Shi},
  editor       = {Maxime Descoteaux and
                  Lena Maier{-}Hein and
                  Alfred M. Franz and
                  Pierre Jannin and
                  D. Louis Collins and
                  Simon Duchesne},
  title        = {{FOD} Restoration for Enhanced Mapping of White Matter Lesion Connectivity},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2017 - 20th International Conference, Quebec City, QC, Canada, September
                  11-13, 2017, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10433},
  pages        = {584--592},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-66182-7\_67},
  doi          = {10.1007/978-3-319-66182-7\_67},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/SunAS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jsjkx/ShiTL16,
  author       = {Yonggang Shi and
                  Jishuang Tan and
                  Zhiwen Liu},
  title        = {{\unicode{22522}}{\unicode{20110}}{\unicode{22270}}{\unicode{21106}}{\unicode{21644}}{\unicode{27700}}{\unicode{24179}}{\unicode{38598}}{\unicode{30340}}{\unicode{32958}}{\unicode{33039}}{\unicode{21307}}{\unicode{23398}}{\unicode{22270}}{\unicode{20687}}{\unicode{20998}}{\unicode{21106}}
                  (Renal Cortex Segmentation Using Graph Cuts and Level Sets)},
  journal      = {{\unicode{35745}}{\unicode{31639}}{\unicode{26426}}{\unicode{31185}}{\unicode{23398}}},
  volume       = {43},
  number       = {7},
  pages        = {290--293},
  year         = {2016},
  url          = {https://doi.org/10.11896/j.issn.1002-137X.2016.07.053},
  doi          = {10.11896/J.ISSN.1002-137X.2016.07.053},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jsjkx/ShiTL16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/KammenLTTS16,
  author       = {Alexandra Kammen and
                  Meng Law and
                  Bosco S. Tjan and
                  Arthur W. Toga and
                  Yonggang Shi},
  title        = {Automated retinofugal visual pathway reconstruction with multi-shell
                  {HARDI} and FOD-based analysis},
  journal      = {NeuroImage},
  volume       = {125},
  pages        = {767--779},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.neuroimage.2015.11.005},
  doi          = {10.1016/J.NEUROIMAGE.2015.11.005},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/KammenLTTS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/LiST16,
  author       = {Junning Li and
                  Yonggang Shi and
                  Arthur W. Toga},
  title        = {Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance
                  Imaging: Structural connectivity of the human brain},
  journal      = {{IEEE} Signal Process. Mag.},
  volume       = {33},
  number       = {3},
  pages        = {36--51},
  year         = {2016},
  url          = {https://doi.org/10.1109/MSP.2015.2510024},
  doi          = {10.1109/MSP.2015.2510024},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/spm/LiST16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/LiST16,
  author       = {Junning Li and
                  Yonggang Shi and
                  Arthur W. Toga},
  title        = {Transformation Invariant Control of Voxel-Wise False Discovery Rate},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {35},
  number       = {10},
  pages        = {2243--2257},
  year         = {2016},
  url          = {https://doi.org/10.1109/TMI.2016.2554554},
  doi          = {10.1109/TMI.2016.2554554},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/LiST16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/AydoganS16,
  author       = {Dogu Baran Aydogan and
                  Yonggang Shi},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {Probabilistic Tractography for Topographically Organized Connectomes},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9900},
  pages        = {201--209},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46720-7\_24},
  doi          = {10.1007/978-3-319-46720-7\_24},
  timestamp    = {Mon, 05 Feb 2024 20:27:27 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/AydoganS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GahmS16,
  author       = {Jin{-}Kyu Gahm and
                  Yonggang Shi},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {Riemannian Metric Optimization for Connectivity-Driven Surface Mapping},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9900},
  pages        = {228--236},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46720-7\_27},
  doi          = {10.1007/978-3-319-46720-7\_27},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GahmS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bspc/HuangLS15,
  author       = {Yali Huang and
                  Zhiwen Liu and
                  Yonggang Shi},
  title        = {Quantitative analysis of live lymphocytes morphology and intracellular
                  motion in microscopic images},
  journal      = {Biomed. Signal Process. Control.},
  volume       = {18},
  pages        = {195--203},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.bspc.2015.01.003},
  doi          = {10.1016/J.BSPC.2015.01.003},
  timestamp    = {Sat, 22 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bspc/HuangLS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/GeSLZLZGXYLTFMT15,
  author       = {Xinting Ge and
                  Yonggang Shi and
                  Junning Li and
                  Zhonghe Zhang and
                  Xiangtao Lin and
                  Jinfeng Zhan and
                  Haitao Ge and
                  Junhai Xu and
                  Qiaowen Yu and
                  Yuan Leng and
                  Gaojun Teng and
                  Lei Feng and
                  Haiwei Meng and
                  Yuchun Tang and
                  Fengchao Zang and
                  Arthur W. Toga and
                  Shuwei Liu},
  title        = {Development of the human fetal hippocampal formation during early
                  second trimester},
  journal      = {NeuroImage},
  volume       = {119},
  pages        = {33--43},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.neuroimage.2015.06.055},
  doi          = {10.1016/J.NEUROIMAGE.2015.06.055},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/GeSLZLZGXYLTFMT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/LiLHS15,
  author       = {Heng Li and
                  Zhiwen Liu and
                  Yali Huang and
                  Yonggang Shi},
  title        = {Quaternion generic Fourier descriptor for color object recognition},
  journal      = {Pattern Recognit.},
  volume       = {48},
  number       = {12},
  pages        = {3895--3903},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.patcog.2015.06.002},
  doi          = {10.1016/J.PATCOG.2015.06.002},
  timestamp    = {Mon, 24 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/pr/LiLHS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/TranS15,
  author       = {Giang Tran and
                  Yonggang Shi},
  title        = {Fiber Orientation and Compartment Parameter Estimation From Multi-Shell
                  Diffusion Imaging},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {34},
  number       = {11},
  pages        = {2320--2332},
  year         = {2015},
  url          = {https://doi.org/10.1109/TMI.2015.2430850},
  doi          = {10.1109/TMI.2015.2430850},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/TranS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/LiLPFS15,
  author       = {Heng Li and
                  Zhiwen Liu and
                  Fengqian Pang and
                  Zhiyi Fan and
                  Yonggang Shi},
  title        = {Analyzing dynamic cellular morphology in time-lapsed images enabled
                  by cellular deformation pattern recognition},
  booktitle    = {37th Annual International Conference of the {IEEE} Engineering in
                  Medicine and Biology Society, {EMBC} 2015, Milan, Italy, August 25-29,
                  2015},
  pages        = {7478--7481},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/EMBC.2015.7320121},
  doi          = {10.1109/EMBC.2015.7320121},
  timestamp    = {Wed, 16 Oct 2019 14:14:50 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/LiLPFS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/PangLLS15,
  author       = {Fengqian Pang and
                  Zhiwen Liu and
                  Heng Li and
                  Yonggang Shi},
  title        = {The measurement of cell viability based on temporal bag of words for
                  image sequences},
  booktitle    = {2015 {IEEE} International Conference on Image Processing, {ICIP} 2015,
                  Quebec City, QC, Canada, September 27-30, 2015},
  pages        = {4185--4189},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/ICIP.2015.7351594},
  doi          = {10.1109/ICIP.2015.7351594},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/PangLLS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/LiST15,
  author       = {Junning Li and
                  Yonggang Shi and
                  Arthur W. Toga},
  editor       = {S{\'{e}}bastien Ourselin and
                  Daniel C. Alexander and
                  Carl{-}Fredrik Westin and
                  Manuel Jorge Cardoso},
  title        = {Controlling False Discovery Rate in Signal Space for Transformation-Invariant
                  Thresholding of Statistical Maps},
  booktitle    = {Information Processing in Medical Imaging - 24th International Conference,
                  {IPMI} 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3,
                  2015, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9123},
  pages        = {125--136},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-19992-4\_10},
  doi          = {10.1007/978-3-319-19992-4\_10},
  timestamp    = {Tue, 14 May 2019 10:00:52 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/LiST15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/JinSZT15,
  author       = {Yan Jin and
                  Yonggang Shi and
                  Liang Zhan and
                  Paul M. Thompson},
  title        = {Automated multi-atlas labeling of the fornix and its integrity in
                  alzheimer's disease},
  booktitle    = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2015, Brooklyn, NY, USA, April 16-19, 2015},
  pages        = {140--143},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/ISBI.2015.7163835},
  doi          = {10.1109/ISBI.2015.7163835},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/JinSZT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/AydoganS15,
  author       = {Dogu Baran Aydogan and
                  Yonggang Shi},
  editor       = {Nassir Navab and
                  Joachim Hornegger and
                  William M. Wells III and
                  Alejandro F. Frangi},
  title        = {Track Filtering via Iterative Correction of {TDI} Topology},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2015 - 18th International Conference Munich, Germany, October 5-9,
                  2015, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9349},
  pages        = {20--27},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-24553-9\_3},
  doi          = {10.1007/978-3-319-24553-9\_3},
  timestamp    = {Sun, 04 Aug 2024 19:38:45 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/AydoganS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/JinSZGZMWTT14,
  author       = {Yan Jin and
                  Yonggang Shi and
                  Liang Zhan and
                  Boris A. Gutman and
                  Greig I. de Zubicaray and
                  Katie L. McMahon and
                  Margaret J. Wright and
                  Arthur W. Toga and
                  Paul M. Thompson},
  title        = {Automatic clustering of white matter fibers in brain diffusion {MRI}
                  with an application to genetics},
  journal      = {NeuroImage},
  volume       = {100},
  pages        = {75--90},
  year         = {2014},
  url          = {https://doi.org/10.1016/j.neuroimage.2014.04.048},
  doi          = {10.1016/J.NEUROIMAGE.2014.04.048},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/JinSZGZMWTT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/LiSTDWT14,
  author       = {Junning Li and
                  Yonggang Shi and
                  Giang Tran and
                  Ivo D. Dinov and
                  Danny J. J. Wang and
                  Arthur W. Toga},
  title        = {Fast Local Trust Region Technique for Diffusion Tensor Registration
                  Using Exact Reorientation and Regularization},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {33},
  number       = {5},
  pages        = {1005--1022},
  year         = {2014},
  url          = {https://doi.org/10.1109/TMI.2013.2274051},
  doi          = {10.1109/TMI.2013.2274051},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/LiSTDWT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ShiLWPMST14,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Danny J. J. Wang and
                  Daniel Pelletier and
                  David C. Mohr and
                  Nancy L. Sicotte and
                  Arthur W. Toga},
  title        = {Metric Optimization for Surface Analysis in the Laplace-Beltrami Embedding
                  Space},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {33},
  number       = {7},
  pages        = {1447--1463},
  year         = {2014},
  url          = {https://doi.org/10.1109/TMI.2014.2313812},
  doi          = {10.1109/TMI.2014.2313812},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ShiLWPMST14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/LiLAS14,
  author       = {Heng Li and
                  Zhiwen Liu and
                  Xing An and
                  Yonggang Shi},
  title        = {Multi-classification of cell deformation based on object alignment
                  and run length statistic},
  booktitle    = {36th Annual International Conference of the {IEEE} Engineering in
                  Medicine and Biology Society, {EMBC} 2014, Chicago, IL, USA, August
                  26-30, 2014},
  pages        = {3378--3381},
  publisher    = {{IEEE}},
  year         = {2014},
  url          = {https://doi.org/10.1109/EMBC.2014.6944347},
  doi          = {10.1109/EMBC.2014.6944347},
  timestamp    = {Wed, 16 Oct 2019 14:14:50 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/LiLAS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LiST14,
  author       = {Junning Li and
                  Yonggang Shi and
                  Arthur W. Toga},
  title        = {Rotational gradient field for interpolation of fiber orientation distribution
                  in connectivity analysis},
  booktitle    = {{IEEE} 11th International Symposium on Biomedical Imaging, {ISBI}
                  2014, April 29 - May 2, 2014, Beijing, Chin, Beijing, China},
  pages        = {1051--1054},
  publisher    = {{IEEE}},
  year         = {2014},
  url          = {https://doi.org/10.1109/ISBI.2014.6868054},
  doi          = {10.1109/ISBI.2014.6868054},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/LiST14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiST14,
  author       = {Junning Li and
                  Yonggang Shi and
                  Arthur W. Toga},
  editor       = {Polina Golland and
                  Nobuhiko Hata and
                  Christian Barillot and
                  Joachim Hornegger and
                  Robert D. Howe},
  title        = {Diffusion of Fiber Orientation Distribution Functions with a Rotation-Induced
                  Riemannian Metric},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2014 - 17th International Conference, Boston, MA, USA, September 14-18,
                  2014, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8675},
  pages        = {249--256},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-10443-0\_32},
  doi          = {10.1007/978-3-319-10443-0\_32},
  timestamp    = {Tue, 01 Jun 2021 15:22:56 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LiST14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShiLT14,
  author       = {Yonggang Shi and
                  Junning Li and
                  Arthur W. Toga},
  editor       = {Guorong Wu and
                  Daoqiang Zhang and
                  Luping Zhou},
  title        = {Persistent Reeb Graph Matching for Fast Brain Search},
  booktitle    = {Machine Learning in Medical Imaging - 5th International Workshop,
                  {MLMI} 2014, Held in Conjunction with {MICCAI} 2014, Boston, MA, USA,
                  September 14, 2014. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8679},
  pages        = {306--313},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-10581-9\_38},
  doi          = {10.1007/978-3-319-10581-9\_38},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ShiLT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhanDLZHSLZFTFTZTL13,
  author       = {Jinfeng Zhan and
                  Ivo D. Dinov and
                  Junning Li and
                  Zhonghe Zhang and
                  Sam Hobel and
                  Yonggang Shi and
                  Xiangtao Lin and
                  Alen Zamanyan and
                  Lei Feng and
                  Gaojun Teng and
                  Fang Fang and
                  Yuchun Tang and
                  Fengchao Zang and
                  Arthur W. Toga and
                  Shuwei Liu},
  title        = {Spatial-temporal atlas of human fetal brain development during the
                  early second trimester},
  journal      = {NeuroImage},
  volume       = {82},
  pages        = {115--126},
  year         = {2013},
  url          = {https://doi.org/10.1016/j.neuroimage.2013.05.063},
  doi          = {10.1016/J.NEUROIMAGE.2013.05.063},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ZhanDLZHSLZFTFTZTL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ShiLT13,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Arthur W. Toga},
  title        = {Cortical Surface Reconstruction via Unified Reeb Analysis of Geometric
                  and Topological Outliers in Magnetic Resonance Images},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {32},
  number       = {3},
  pages        = {511--530},
  year         = {2013},
  url          = {https://doi.org/10.1109/TMI.2012.2224879},
  doi          = {10.1109/TMI.2012.2224879},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ShiLT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/HuangLSLAG13,
  author       = {Yali Huang and
                  Zhiwen Liu and
                  Yonggang Shi and
                  Ning Li and
                  Xing An and
                  Xiaoming Gou},
  title        = {Quantitative Analysis of Lymphocytes Morphology and Motion in Intravital
                  Microscopic Images},
  booktitle    = {35th Annual International Conference of the {IEEE} Engineering in
                  Medicine and Biology Society, {EMBC} 2013, Osaka, Japan, July 3-7,
                  2013},
  pages        = {3686--3689},
  publisher    = {{IEEE}},
  year         = {2013},
  url          = {https://doi.org/10.1109/EMBC.2013.6610343},
  doi          = {10.1109/EMBC.2013.6610343},
  timestamp    = {Wed, 16 Oct 2019 14:14:50 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/HuangLSLAG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/ShiLT13,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Arthur W. Toga},
  editor       = {James C. Gee and
                  Sarang C. Joshi and
                  Kilian M. Pohl and
                  William M. Wells III and
                  Lilla Z{\"{o}}llei},
  title        = {Conformal Mapping via Metric Optimization with Application for Cortical
                  Label Fusion},
  booktitle    = {Information Processing in Medical Imaging - 23rd International Conference,
                  {IPMI} 2013, Asilomar, CA, USA, June 28-July 3, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7917},
  pages        = {244--255},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-38868-2\_21},
  doi          = {10.1007/978-3-642-38868-2\_21},
  timestamp    = {Tue, 14 May 2019 10:00:52 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/ShiLT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/JinSZZMMWT13,
  author       = {Yan Jin and
                  Yonggang Shi and
                  Liang Zhan and
                  Greig I. de Zubicaray and
                  Katie McMahon and
                  Nicholas G. Martin and
                  Margaret J. Wright and
                  Paul M. Thompson},
  title        = {Labeling white matter tracts in hardi by fusing multiple tract atlases
                  with applications to genetics},
  booktitle    = {10th {IEEE} International Symposium on Biomedical Imaging: From Nano
                  to Macro, {ISBI} 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings},
  pages        = {512--515},
  publisher    = {{IEEE}},
  year         = {2013},
  url          = {https://doi.org/10.1109/ISBI.2013.6556524},
  doi          = {10.1109/ISBI.2013.6556524},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/JinSZZMMWT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiSDT13,
  author       = {Junning Li and
                  Yonggang Shi and
                  Ivo D. Dinov and
                  Arthur W. Toga},
  editor       = {Li Shen and
                  Tianming Liu and
                  Pew{-}Thian Yap and
                  Heng Huang and
                  Dinggang Shen and
                  Carl{-}Fredrik Westin},
  title        = {Locally Weighted Multi-atlas Construction},
  booktitle    = {Multimodal Brain Image Analysis - Third International Workshop, {MBIA}
                  2013, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan, September
                  22, 2013, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8159},
  pages        = {1--8},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-319-02126-3\_1},
  doi          = {10.1007/978-3-319-02126-3\_1},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/LiSDT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/TranS13,
  author       = {Giang Tran and
                  Yonggang Shi},
  editor       = {Kensaku Mori and
                  Ichiro Sakuma and
                  Yoshinobu Sato and
                  Christian Barillot and
                  Nassir Navab},
  title        = {Adaptively Constrained Convex Optimization for Accurate Fiber Orientation
                  Estimation with High Order Spherical Harmonics},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2013 - 16th International Conference, Nagoya, Japan, September 22-26,
                  2013, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8151},
  pages        = {485--492},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40760-4\_61},
  doi          = {10.1007/978-3-642-40760-4\_61},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/TranS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiJSDWTT13,
  author       = {Junning Li and
                  Yan Jin and
                  Yonggang Shi and
                  Ivo D. Dinov and
                  Danny J. J. Wang and
                  Arthur W. Toga and
                  Paul M. Thompson},
  editor       = {Kensaku Mori and
                  Ichiro Sakuma and
                  Yoshinobu Sato and
                  Christian Barillot and
                  Nassir Navab},
  title        = {Voxelwise Spectral Diffusional Connectivity and Its Applications to
                  Alzheimer's Disease and Intelligence Prediction},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2013 - 16th International Conference, Nagoya, Japan, September 22-26,
                  2013, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8149},
  pages        = {655--662},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40811-3\_82},
  doi          = {10.1007/978-3-642-40811-3\_82},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LiJSDWTT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiSTDWT12,
  author       = {Junning Li and
                  Yonggang Shi and
                  Giang Tran and
                  Ivo D. Dinov and
                  Danny J. J. Wang and
                  Arthur W. Toga},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette and
                  Polina Golland and
                  Kensaku Mori},
  title        = {Fast Diffusion Tensor Registration with Exact Reorientation and Regularization},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2012 - 15th International Conference, Nice, France, October 1-5, 2012,
                  Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7511},
  pages        = {138--145},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33418-4\_18},
  doi          = {10.1007/978-3-642-33418-4\_18},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/LiSTDWT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/JinSZLZMMWT12,
  author       = {Yan Jin and
                  Yonggang Shi and
                  Liang Zhan and
                  Junning Li and
                  Greig I. de Zubicaray and
                  Katie McMahon and
                  Nicholas G. Martin and
                  Margaret J. Wright and
                  Paul M. Thompson},
  editor       = {Pew{-}Thian Yap and
                  Tianming Liu and
                  Dinggang Shen and
                  Carl{-}Fredrik Westin and
                  Li Shen},
  title        = {Automatic Population {HARDI} White Matter Tract Clustering by Label
                  Fusion of Multiple Tract Atlases},
  booktitle    = {Multimodal Brain Image Analysis - Second International Workshop, {MBIA}
                  2012, Held in Conjunction with {MICCAI} 2012, Nice, France, October
                  1-5, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7509},
  pages        = {147--156},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33530-3\_12},
  doi          = {10.1007/978-3-642-33530-3\_12},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/JinSZLZMMWT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/AnLSLWJ12,
  author       = {Xing An and
                  Zhiwen Liu and
                  Yonggang Shi and
                  Ning Li and
                  Yalin Wang and
                  Shantanu H. Joshi},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette and
                  Polina Golland and
                  Kensaku Mori},
  title        = {Modeling Dynamic Cellular Morphology in Images},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2012 - 15th International Conference, Nice, France, October 1-5, 2012,
                  Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7510},
  pages        = {340--347},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33415-3\_42},
  doi          = {10.1007/978-3-642-33415-3\_42},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/AnLSLWJ12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShiLT12,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Arthur W. Toga},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette and
                  Polina Golland and
                  Kensaku Mori},
  title        = {Unified Geometry and Topology Correction for Cortical Surface Reconstruction
                  with Intrinsic Reeb Analysis},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2012 - 15th International Conference, Nice, France, October 1-5, 2012,
                  Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7510},
  pages        = {601--608},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33415-3\_74},
  doi          = {10.1007/978-3-642-33415-3\_74},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ShiLT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/CostafredaDTSLKMSTVWSTLS11,
  author       = {Sergi G. Costafreda and
                  Ivo D. Dinov and
                  Zhuowen Tu and
                  Yonggang Shi and
                  Cheng{-}Yi Liu and
                  Iwona Kloszewska and
                  Patrizia Mecocci and
                  Hilkka Soininen and
                  Magda Tsolaki and
                  Bruno Vellas and
                  Lars{-}Olof Wahlund and
                  Christian Spenger and
                  Arthur W. Toga and
                  Simon Lovestone and
                  Andrew Simmons},
  title        = {Automated hippocampal shape analysis predicts the onset of dementia
                  in mild cognitive impairment},
  journal      = {NeuroImage},
  volume       = {56},
  number       = {1},
  pages        = {212--219},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.neuroimage.2011.01.050},
  doi          = {10.1016/J.NEUROIMAGE.2011.01.050},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/CostafredaDTSLKMSTVWSTLS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bmei/LiSJLY11,
  author       = {Ying Li and
                  Yonggang Shi and
                  Fa Jie and
                  Zhiwen Liu and
                  Yong Yuan},
  editor       = {Yongsheng Ding and
                  Yonghong Peng and
                  Riyi Shi and
                  Kuangrong Hao and
                  Lipo Wang},
  title        = {Multi-modal diffeomorphic demons registration based on mutual information},
  booktitle    = {4th International Conference on Biomedical Engineering and Informatics,
                  {BMEI} 2011, Shanghai, China, October 15-17, 2011},
  pages        = {800--804},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/BMEI.2011.6098472},
  doi          = {10.1109/BMEI.2011.6098472},
  timestamp    = {Wed, 16 Oct 2019 14:14:50 +0200},
  biburl       = {https://dblp.org/rec/conf/bmei/LiSJLY11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccv/LaiSST11,
  author       = {Rongjie Lai and
                  Yonggang Shi and
                  Nancy L. Sicotte and
                  Arthur W. Toga},
  editor       = {Dimitris N. Metaxas and
                  Long Quan and
                  Alberto Sanfeliu and
                  Luc Van Gool},
  title        = {Automated corpus callosum extraction via Laplace-Beltrami nodal parcellation
                  and intrinsic geodesic curvature flows on surfaces},
  booktitle    = {{IEEE} International Conference on Computer Vision, {ICCV} 2011, Barcelona,
                  Spain, November 6-13, 2011},
  pages        = {2034--2040},
  publisher    = {{IEEE} Computer Society},
  year         = {2011},
  url          = {https://doi.org/10.1109/ICCV.2011.6126476},
  doi          = {10.1109/ICCV.2011.6126476},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iccv/LaiSST11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/ShiLT11,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Arthur W. Toga},
  editor       = {G{\'{a}}bor Sz{\'{e}}kely and
                  Horst K. Hahn},
  title        = {CoRPORATE: Cortical Reconstruction by Pruning Outliers with Reeb Analysis
                  and Topology-Preserving Evolution},
  booktitle    = {Information Processing in Medical Imaging - 22nd International Conference,
                  {IPMI} 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6801},
  pages        = {233--244},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-22092-0\_20},
  doi          = {10.1007/978-3-642-22092-0\_20},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/ShiLT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/JinSJASTT11,
  author       = {Yan Jin and
                  Yonggang Shi and
                  Neda Jahanshad and
                  Iman Aganj and
                  Guillermo Sapiro and
                  Arthur W. Toga and
                  Paul M. Thompson},
  title        = {3D elastic registration improves HARDI-derived fiber alignment and
                  automated tract clustering},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {822--826},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872531},
  doi          = {10.1109/ISBI.2011.5872531},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/JinSJASTT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/PatelSTT11,
  author       = {Vishal Patel and
                  Yonggang Shi and
                  Paul M. Thompson and
                  Arthur W. Toga},
  title        = {{K-SVD} for {HARDI} denoising},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {1805--1808},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872757},
  doi          = {10.1109/ISBI.2011.5872757},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/PatelSTT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/JinSJJZZMMWTT11,
  author       = {Yan Jin and
                  Yonggang Shi and
                  Shantanu H. Joshi and
                  Neda Jahanshad and
                  Liang Zhan and
                  Greig I. de Zubicaray and
                  Katie McMahon and
                  Nicholas G. Martin and
                  Margaret J. Wright and
                  Arthur W. Toga and
                  Paul M. Thompson},
  editor       = {Tianming Liu and
                  Dinggang Shen and
                  Luis Ib{\'{a}}{\~{n}}ez and
                  Xiaodong Tao},
  title        = {Heritability of White Matter Fiber Tract Shapes: {A} {HARDI} Study
                  of 198 Twins},
  booktitle    = {Multimodal Brain Image Analysis, First International Workshop, {MBIA}
                  2011, Held in Conjunction with {MICCAI} 2011, Toronto, Canada, September
                  18, 2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7012},
  pages        = {35--43},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-24446-9\_5},
  doi          = {10.1007/978-3-642-24446-9\_5},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/JinSJJZZMMWTT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShiLGPMST11,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Raja Gill and
                  Daniel Pelletier and
                  David C. Mohr and
                  Nancy L. Sicotte and
                  Arthur W. Toga},
  editor       = {Gabor Fichtinger and
                  Anne L. Martel and
                  Terry M. Peters},
  title        = {Conformal Metric Optimization on Surface {(CMOS)} for Deformation
                  and Mapping in Laplace-Beltrami Embedding Space},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2011 - 14th International Conference, Toronto, Canada, September 18-22,
                  2011, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6892},
  pages        = {327--334},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-23629-7\_40},
  doi          = {10.1007/978-3-642-23629-7\_40},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ShiLGPMST11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcv/LiuSDM10,
  author       = {Xiuwen Liu and
                  Yonggang Shi and
                  Ivo D. Dinov and
                  Washington Mio},
  title        = {A Computational Model of Multidimensional Shape},
  journal      = {Int. J. Comput. Vis.},
  volume       = {89},
  number       = {1},
  pages        = {69--83},
  year         = {2010},
  url          = {https://doi.org/10.1007/s11263-010-0323-0},
  doi          = {10.1007/S11263-010-0323-0},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ijcv/LiuSDM10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/PatelSTT10,
  author       = {Vishal Patel and
                  Yonggang Shi and
                  Paul M. Thompson and
                  Arthur W. Toga},
  title        = {Mesh-based spherical deconvolution: {A} flexible approach to reconstruction
                  of non-negative fiber orientation distributions},
  journal      = {NeuroImage},
  volume       = {51},
  number       = {3},
  pages        = {1071--1081},
  year         = {2010},
  url          = {https://doi.org/10.1016/j.neuroimage.2010.02.060},
  doi          = {10.1016/J.NEUROIMAGE.2010.02.060},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/PatelSTT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ShiLMDTT10,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Jonathan H. Morra and
                  Ivo D. Dinov and
                  Paul M. Thompson and
                  Arthur W. Toga},
  title        = {Robust Surface Reconstruction via Laplace-Beltrami Eigen-Projection
                  and Boundary Deformation},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {29},
  number       = {12},
  pages        = {2009--2022},
  year         = {2010},
  url          = {https://doi.org/10.1109/TMI.2010.2057441},
  doi          = {10.1109/TMI.2010.2057441},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ShiLMDTT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/LaiSSFWTC10,
  author       = {Rongjie Lai and
                  Yonggang Shi and
                  Kevin Scheibel and
                  Scott C. Fears and
                  Roger P. Woods and
                  Arthur W. Toga and
                  Tony F. Chan},
  title        = {Metric-induced optimal embedding for intrinsic 3D shape analysis},
  booktitle    = {The Twenty-Third {IEEE} Conference on Computer Vision and Pattern
                  Recognition, {CVPR} 2010, San Francisco, CA, USA, 13-18 June 2010},
  pages        = {2871--2878},
  publisher    = {{IEEE} Computer Society},
  year         = {2010},
  url          = {https://doi.org/10.1109/CVPR.2010.5540023},
  doi          = {10.1109/CVPR.2010.5540023},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cvpr/LaiSSFWTC10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/LiuLSTM10,
  author       = {Xinyang Liu and
                  Xiuwen Liu and
                  Yonggang Shi and
                  Paul M. Thompson and
                  Washington Mio},
  editor       = {Kostas Daniilidis and
                  Petros Maragos and
                  Nikos Paragios},
  title        = {A Model of Volumetric Shape for the Analysis of Longitudinal Alzheimer's
                  Disease Data},
  booktitle    = {Computer Vision - {ECCV} 2010, 11th European Conference on Computer
                  Vision, Heraklion, Crete, Greece, September 5-11, 2010, Proceedings,
                  Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6313},
  pages        = {594--606},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15558-1\_43},
  doi          = {10.1007/978-3-642-15558-1\_43},
  timestamp    = {Thu, 27 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/eccv/LiuLSTM10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LiuSWTM10,
  author       = {Xiuwen Liu and
                  Yonggang Shi and
                  Ying Wang and
                  Paul M. Thompson and
                  Washington Mio},
  title        = {A Riemannian model of regional degeneration of the hippocampus in
                  Alzheimer's disease},
  booktitle    = {Proceedings of the 2010 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April,
                  2010},
  pages        = {237--240},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/ISBI.2010.5490371},
  doi          = {10.1109/ISBI.2010.5490371},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/LiuSWTM10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShiSLDT10,
  author       = {Yonggang Shi and
                  Bo Sun and
                  Rongjie Lai and
                  Ivo D. Dinov and
                  Arthur W. Toga},
  editor       = {Tianzi Jiang and
                  Nassir Navab and
                  Josien P. W. Pluim and
                  Max A. Viergever},
  title        = {Automated Sulci Identification via Intrinsic Modeling of Cortical
                  Anatomy},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2010, 13th International Conference, Beijing, China, September 20-24,
                  2010, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6363},
  pages        = {49--56},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15711-0\_7},
  doi          = {10.1007/978-3-642-15711-0\_7},
  timestamp    = {Tue, 14 May 2019 10:00:50 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ShiSLDT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/LeporeSLFVCLLDTT09,
  author       = {Natasha Lepor{\'{e}} and
                  Yonggang Shi and
                  Franco Lepore and
                  Madeleine Fortin and
                  Patrice Voss and
                  Yi{-}Yu Chou and
                  Catherine Lord and
                  Maryse Lassonde and
                  Ivo D. Dinov and
                  Arthur W. Toga and
                  Paul M. Thompson},
  title        = {Pattern of hippocampal shape and volume differences in blind subjects},
  journal      = {NeuroImage},
  volume       = {46},
  number       = {4},
  pages        = {949--957},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.neuroimage.2009.01.071},
  doi          = {10.1016/J.NEUROIMAGE.2009.01.071},
  timestamp    = {Wed, 20 Mar 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/LeporeSLFVCLLDTT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ShiTRDLGDTT09,
  author       = {Yonggang Shi and
                  Zhuowen Tu and
                  Allan L. Reiss and
                  Rebecca A. Dutton and
                  Agatha D. Lee and
                  Albert M. Galaburda and
                  Ivo D. Dinov and
                  Paul M. Thompson and
                  Arthur W. Toga},
  title        = {Joint Sulcal Detection on Cortical Surfaces With Graphical Models
                  and Boosted Priors},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {28},
  number       = {3},
  pages        = {361--373},
  year         = {2009},
  url          = {https://doi.org/10.1109/TMI.2008.2004402},
  doi          = {10.1109/TMI.2008.2004402},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ShiTRDLGDTT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bmei/AnLLS09,
  author       = {Xing An and
                  Zhiwen Liu and
                  Chuanfeng Lv and
                  Yonggang Shi},
  title        = {A Method of Quantitative Analysis for Dynamic Cellular Morphological
                  Change},
  booktitle    = {Proceedings of the 2nd International Conference on BioMedical Engineering
                  and Informatics, {BMEI} 2009, October 17-19, 2009, Tianjin, China},
  pages        = {1--4},
  publisher    = {{IEEE}},
  year         = {2009},
  url          = {https://doi.org/10.1109/BMEI.2009.5304875},
  doi          = {10.1109/BMEI.2009.5304875},
  timestamp    = {Wed, 16 Oct 2019 14:14:50 +0200},
  biburl       = {https://dblp.org/rec/conf/bmei/AnLLS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/ShiMTT09,
  author       = {Yonggang Shi and
                  Jonathan H. Morra and
                  Paul M. Thompson and
                  Arthur W. Toga},
  editor       = {Jerry L. Prince and
                  Dzung L. Pham and
                  Kyle J. Myers},
  title        = {Inverse-Consistent Surface Mapping with Laplace-Beltrami Eigen-Features},
  booktitle    = {Information Processing in Medical Imaging, 21st International Conference,
                  {IPMI} 2009, Williamsburg, VA, USA, July 5-10, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5636},
  pages        = {467--478},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02498-6\_39},
  doi          = {10.1007/978-3-642-02498-6\_39},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/ShiMTT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/PatelSTT09,
  author       = {Vishal Patel and
                  Yonggang Shi and
                  Paul M. Thompson and
                  Arthur W. Toga},
  title        = {Mesh-Based Spherical Deconvolution for Physically Valid Fiber Orientation
                  Reconstruction from Diffusion-Weighted {MRI}},
  booktitle    = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
  pages        = {614--617},
  publisher    = {{IEEE}},
  year         = {2009},
  url          = {https://doi.org/10.1109/ISBI.2009.5193122},
  doi          = {10.1109/ISBI.2009.5193122},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/PatelSTT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LaiSDCT09,
  author       = {Rongjie Lai and
                  Yonggang Shi and
                  Ivo D. Dinov and
                  Tony F. Chan and
                  Arthur W. Toga},
  title        = {Laplace-Beltrami Nodal Counts: {A} New Signature for 3D Shape Analysis},
  booktitle    = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
  pages        = {694--697},
  publisher    = {{IEEE}},
  year         = {2009},
  url          = {https://doi.org/10.1109/ISBI.2009.5193142},
  doi          = {10.1109/ISBI.2009.5193142},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbi/LaiSDCT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LiuSMLTM09,
  author       = {Xinyang Liu and
                  Yonggang Shi and
                  Jonathan H. Morra and
                  Xiuwen Liu and
                  Paul M. Thompson and
                  Washington Mio},
  title        = {Mapping Hippocampal Atrophy with a Multi-Scale Model of Shape},
  booktitle    = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
  pages        = {879--882},
  publisher    = {{IEEE}},
  year         = {2009},
  url          = {https://doi.org/10.1109/ISBI.2009.5193193},
  doi          = {10.1109/ISBI.2009.5193193},
  timestamp    = {Thu, 25 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/LiuSMLTM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isvc/DongMDTSWT09,
  author       = {Bin Dong and
                  Yu Mao and
                  Ivo D. Dinov and
                  Zhuowen Tu and
                  Yonggang Shi and
                  Yalin Wang and
                  Arthur W. Toga},
  editor       = {George Bebis and
                  Richard D. Boyle and
                  Bahram Parvin and
                  Darko Koracin and
                  Yoshinori Kuno and
                  Junxian Wang and
                  Renato Pajarola and
                  Peter Lindstrom and
                  Andr{\'{e}} Hinkenjann and
                  L. Miguel Encarna{\c{c}}{\~{a}}o and
                  Cl{\'{a}}udio T. Silva and
                  Daniel S. Coming},
  title        = {Wavelet-Based Representation of Biological Shapes},
  booktitle    = {Advances in Visual Computing, 5th International Symposium, {ISVC}
                  2009, Las Vegas, NV, USA, November 30 - December 2, 2009, Proceedings,
                  Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5875},
  pages        = {955--964},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-10331-5\_89},
  doi          = {10.1007/978-3-642-10331-5\_89},
  timestamp    = {Thu, 15 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isvc/DongMDTSWT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShiDT09,
  author       = {Yonggang Shi and
                  Ivo D. Dinov and
                  Arthur W. Toga},
  editor       = {Guang{-}Zhong Yang and
                  David J. Hawkes and
                  Daniel Rueckert and
                  J. Alison Noble and
                  Christopher J. Taylor},
  title        = {Cortical Shape Analysis in the Laplace-Beltrami Feature Space},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2009, 12th International Conference, London, UK, September 20-24,
                  2009, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5762},
  pages        = {208--215},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04271-3\_26},
  doi          = {10.1007/978-3-642-04271-3\_26},
  timestamp    = {Sat, 30 May 2020 20:06:20 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/ShiDT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/ShiK08,
  author       = {Yonggang Shi and
                  William Clement Karl},
  title        = {A Real-Time Algorithm for the Approximation of Level-Set-Based Curve
                  Evolution},
  journal      = {{IEEE} Trans. Image Process.},
  volume       = {17},
  number       = {5},
  pages        = {645--656},
  year         = {2008},
  url          = {https://doi.org/10.1109/TIP.2008.920737},
  doi          = {10.1109/TIP.2008.920737},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tip/ShiK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ShiTDT08,
  author       = {Yonggang Shi and
                  Paul M. Thompson and
                  Ivo D. Dinov and
                  Arthur W. Toga},
  title        = {Hamilton-Jacobi Skeleton on Cortical Surfaces},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {27},
  number       = {5},
  pages        = {664--673},
  year         = {2008},
  url          = {https://doi.org/10.1109/TMI.2007.913279},
  doi          = {10.1109/TMI.2007.913279},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/ShiTDT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/ShiLKSDT08,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Sheila Krishna and
                  Nancy L. Sicotte and
                  Ivo D. Dinov and
                  Arthur W. Toga},
  title        = {Anisotropic Laplace-Beltrami eigenmaps: Bridging Reeb graphs and skeletons},
  booktitle    = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR}
                  Workshops 2008, Anchorage, AK, USA, 23-28 June, 2008},
  pages        = {1--7},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/CVPRW.2008.4563018},
  doi          = {10.1109/CVPRW.2008.4563018},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cvpr/ShiLKSDT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShiLKSDT08,
  author       = {Yonggang Shi and
                  Rongjie Lai and
                  Kyle C. Kern and
                  Nancy L. Sicotte and
                  Ivo D. Dinov and
                  Arthur W. Toga},
  editor       = {Dimitris N. Metaxas and
                  Leon Axel and
                  Gabor Fichtinger and
                  G{\'{a}}bor Sz{\'{e}}kely},
  title        = {Harmonic Surface Mapping with Laplace-Beltrami Eigenmaps},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2008, 11th International Conference, New York, NY, USA, September
                  6-10, 2008, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5242},
  pages        = {147--154},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-85990-1\_18},
  doi          = {10.1007/978-3-540-85990-1\_18},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ShiLKSDT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiuMSDLLLFVLT08,
  author       = {Xinyang Liu and
                  Washington Mio and
                  Yonggang Shi and
                  Ivo D. Dinov and
                  Xiuwen Liu and
                  Natasha Lepor{\'{e}} and
                  Franco Lepore and
                  Madeleine Fortin and
                  Patrice Voss and
                  Maryse Lassonde and
                  Paul M. Thompson},
  editor       = {Dimitris N. Metaxas and
                  Leon Axel and
                  Gabor Fichtinger and
                  G{\'{a}}bor Sz{\'{e}}kely},
  title        = {Models of Normal Variation and Local Contrasts in Hippocampal Anatomy},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2008, 11th International Conference, New York, NY, USA, September
                  6-10, 2008, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5242},
  pages        = {407--415},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-85990-1\_49},
  doi          = {10.1007/978-3-540-85990-1\_49},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LiuMSDLLLFVLT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/ShiTDOT07,
  author       = {Yonggang Shi and
                  Paul M. Thompson and
                  Ivo D. Dinov and
                  Stanley J. Osher and
                  Arthur W. Toga},
  title        = {Direct cortical mapping via solving partial differential equations
                  on implicit surfaces},
  journal      = {Medical Image Anal.},
  volume       = {11},
  number       = {3},
  pages        = {207--223},
  year         = {2007},
  url          = {https://doi.org/10.1016/j.media.2007.02.001},
  doi          = {10.1016/J.MEDIA.2007.02.001},
  timestamp    = {Mon, 24 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/ShiTDOT07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ShiTZRTDT07,
  author       = {Yonggang Shi and
                  Paul M. Thompson and
                  Greig I. de Zubicaray and
                  Stephen E. Rose and
                  Zhuowen Tu and
                  Ivo D. Dinov and
                  Arthur W. Toga},
  title        = {Direct mapping of hippocampal surfaces with intrinsic shape context},
  journal      = {NeuroImage},
  volume       = {37},
  number       = {3},
  pages        = {792--807},
  year         = {2007},
  url          = {https://doi.org/10.1016/j.neuroimage.2007.05.016},
  doi          = {10.1016/J.NEUROIMAGE.2007.05.016},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ShiTZRTDT07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/ShiTRDLGDTT07,
  author       = {Yonggang Shi and
                  Zhuowen Tu and
                  Allan L. Reiss and
                  Rebecca A. Dutton and
                  Agatha D. Lee and
                  Albert M. Galaburda and
                  Ivo D. Dinov and
                  Paul M. Thompson and
                  Arthur W. Toga},
  editor       = {Nico Karssemeijer and
                  Boudewijn P. F. Lelieveldt},
  title        = {Joint Sulci Detection Using Graphical Models and Boosted Priors},
  booktitle    = {Information Processing in Medical Imaging, 20th International Conference,
                  {IPMI} 2007, Kerkrade, The Netherlands, July 2-6, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4584},
  pages        = {98--109},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-73273-0\_9},
  doi          = {10.1007/978-3-540-73273-0\_9},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/ShiTRDLGDTT07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ShiRLDBGKMDTT07,
  author       = {Yonggang Shi and
                  Allan L. Reiss and
                  Agatha D. Lee and
                  Rebecca A. Dutton and
                  Ursula Bellugi and
                  Albert M. Galaburda and
                  Julie R. Korenberg and
                  Debra L. Mills and
                  Ivo D. Dinov and
                  Paul M. Thompson and
                  Arthur W. Toga},
  title        = {Hamilton-Jacobi Skeletons on Cortical Surfaces with Applications in
                  Characterizing the Gyrification Pattern Inwilliams Syndrome},
  booktitle    = {Proceedings of the 2007 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007},
  pages        = {660--663},
  publisher    = {{IEEE}},
  year         = {2007},
  url          = {https://doi.org/10.1109/ISBI.2007.356938},
  doi          = {10.1109/ISBI.2007.356938},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ShiRLDBGKMDTT07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvbia/ShenSP05,
  author       = {Hong Shen and
                  Yonggang Shi and
                  Zhigang Peng},
  editor       = {Yanxi Liu and
                  Tianzi Jiang and
                  Changshui Zhang},
  title        = {Applying Prior Knowledge in the Segmentation of 3D Complex Anatomic
                  Structures},
  booktitle    = {Computer Vision for Biomedical Image Applications, First International
                  Workshop, {CVBIA} 2005, Beijing, China, October 21, 2005, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3765},
  pages        = {189--199},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11569541\_20},
  doi          = {10.1007/11569541\_20},
  timestamp    = {Tue, 27 Feb 2024 09:03:29 +0100},
  biburl       = {https://dblp.org/rec/conf/cvbia/ShenSP05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/ShiK05,
  author       = {Yonggang Shi and
                  William Clement Karl},
  title        = {Real-Time Tracking Using Level Sets},
  booktitle    = {2005 {IEEE} Computer Society Conference on Computer Vision and Pattern
                  Recognition {(CVPR} 2005), 20-26 June 2005, San Diego, CA, {USA}},
  pages        = {34--41},
  publisher    = {{IEEE} Computer Society},
  year         = {2005},
  url          = {https://doi.org/10.1109/CVPR.2005.294},
  doi          = {10.1109/CVPR.2005.294},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cvpr/ShiK05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/ShiK05,
  author       = {Yonggang Shi and
                  William Clement Karl},
  title        = {A Fast Level Set Method Without Solving PDEs},
  booktitle    = {2005 {IEEE} International Conference on Acoustics, Speech, and Signal
                  Processing, {ICASSP} '05, Philadelphia, Pennsylvania, USA, March 18-23,
                  2005},
  pages        = {97--100},
  publisher    = {{IEEE}},
  year         = {2005},
  url          = {https://doi.org/10.1109/ICASSP.2005.1415350},
  doi          = {10.1109/ICASSP.2005.1415350},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icassp/ShiK05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/ShiK04,
  author       = {Yonggang Shi and
                  William Clement Karl},
  title        = {Shape reconstruction from unorganized points with a data-driven level
                  set method},
  booktitle    = {2004 {IEEE} International Conference on Acoustics, Speech, and Signal
                  Processing, {ICASSP} 2004, Montreal, Quebec, Canada, May 17-21, 2004},
  pages        = {13--16},
  publisher    = {{IEEE}},
  year         = {2004},
  url          = {https://doi.org/10.1109/ICASSP.2004.1326469},
  doi          = {10.1109/ICASSP.2004.1326469},
  timestamp    = {Mon, 22 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icassp/ShiK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/SaligramaSK04,
  author       = {Venkatesh Saligrama and
                  Yonggang Shi and
                  William Clement Karl},
  title        = {Performance guarantees in sensor networks},
  booktitle    = {2004 {IEEE} International Conference on Acoustics, Speech, and Signal
                  Processing, {ICASSP} 2004, Montreal, Quebec, Canada, May 17-21, 2004},
  pages        = {269--272},
  publisher    = {{IEEE}},
  year         = {2004},
  url          = {https://doi.org/10.1109/ICASSP.2004.1326246},
  doi          = {10.1109/ICASSP.2004.1326246},
  timestamp    = {Mon, 22 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icassp/SaligramaSK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ShiK04,
  author       = {Yonggang Shi and
                  William Clement Karl},
  title        = {Level Set Methods for Dynamic Tomography},
  booktitle    = {Proceedings of the 2004 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Arlington, VA, USA, 15-18 April 2004},
  pages        = {620--623},
  publisher    = {{IEEE}},
  year         = {2004},
  url          = {https://doi.org/10.1109/ISBI.2004.1398614},
  doi          = {10.1109/ISBI.2004.1398614},
  timestamp    = {Wed, 04 Oct 2023 16:23:55 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ShiK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ShiK04a,
  author       = {Yonggang Shi and
                  William Clement Karl},
  title        = {Differentiable Minimin Shape Distance For Incorporating Topological
                  Priors in Biomedical Imaging},
  booktitle    = {Proceedings of the 2004 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Arlington, VA, USA, 15-18 April 2004},
  pages        = {1247--1254},
  publisher    = {{IEEE}},
  year         = {2004},
  url          = {https://doi.org/10.1109/ISBI.2004.1398771},
  doi          = {10.1109/ISBI.2004.1398771},
  timestamp    = {Wed, 04 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ShiK04a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vcip/ShiKK04,
  author       = {Yonggang Shi and
                  Janusz Konrad and
                  William Clement Karl},
  editor       = {Sethuraman Panchanathan and
                  Bhaskaran Vasudev},
  title        = {Multiple motion and occlusion segmentation with a multiphase level
                  set method},
  booktitle    = {Visual Communications and Image Processing 2004, {VCIP} 2004, San
                  Jose, California, USA, 18-22 January 2004},
  series       = {{SPIE} Proceedings},
  volume       = {5308},
  publisher    = {{SPIE}},
  year         = {2004},
  url          = {https://doi.org/10.1117/12.525144},
  doi          = {10.1117/12.525144},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/vcip/ShiKK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cimaging/ShiK03,
  author       = {Yonggang Shi and
                  William Clement Karl},
  editor       = {Charles A. Bouman and
                  Robert L. Stevenson},
  title        = {Tomographic reconstruction of dynamic objects},
  booktitle    = {Computational Imaging, Santa Clara, CA, USA, January 20, 2003},
  series       = {{SPIE} Proceedings},
  volume       = {5016},
  pages        = {151--160},
  publisher    = {{SPIE}},
  year         = {2003},
  url          = {https://doi.org/10.1117/12.483902},
  doi          = {10.1117/12.483902},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cimaging/ShiK03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ShiKC03,
  author       = {Yonggang Shi and
                  William Clement Karl and
                  David A. Casta{\~{n}}{\'{o}}n},
  editor       = {Milan Sonka and
                  J. Michael Fitzpatrick},
  title        = {Curve evolution methods for dynamic tomography with unknown dynamic
                  models},
  booktitle    = {Medical Imaging 2003: Image Processing, San Diego, California, United
                  States, 15-20 February 2003},
  series       = {{SPIE} Proceedings},
  volume       = {5032},
  publisher    = {{SPIE}},
  year         = {2003},
  url          = {https://doi.org/10.1117/12.481883},
  doi          = {10.1117/12.481883},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/ShiKC03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/ShiK02,
  author       = {Yonggang Shi and
                  William Clement Karl},
  title        = {Dynamic tomography with curve evolution methods},
  booktitle    = {Proceedings of the {IEEE} International Conference on Acoustics, Speech,
                  and Signal Processing, {ICASSP} 2002, May 13-17 2002, Orlando, Florida,
                  {USA}},
  pages        = {3229--3232},
  publisher    = {{IEEE}},
  year         = {2002},
  url          = {https://doi.org/10.1109/ICASSP.2002.5745341},
  doi          = {10.1109/ICASSP.2002.5745341},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icassp/ShiK02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/ShiKC02,
  author       = {Yonggang Shi and
                  William Clement Karl and
                  David A. Casta{\~{n}}{\'{o}}n},
  title        = {Dynamic tomography using curve evolution with spatial-temporal regularization},
  booktitle    = {Proceedings of the 2002 International Conference on Image Processing,
                  {ICIP} 2002, Rochester, New York, USA, September 22-25, 2002},
  pages        = {629--632},
  publisher    = {{IEEE}},
  year         = {2002},
  url          = {https://doi.org/10.1109/ICIP.2002.1040029},
  doi          = {10.1109/ICIP.2002.1040029},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/ShiKC02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}