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ORCIDBibTeX records: Alexander Schliep
@inproceedings{DBLP:conf/bigdataconf/JohanssonECS23,
author = {Simon Johansson and
Ola Engkvist and
Morteza Haghir Chehreghani and
Alexander Schliep},
editor = {Jingrui He and
Themis Palpanas and
Xiaohua Hu and
Alfredo Cuzzocrea and
Dejing Dou and
Dominik Slezak and
Wei Wang and
Aleksandra Gruca and
Jerry Chun{-}Wei Lin and
Rakesh Agrawal},
title = {Diverse Data Expansion with Semi-Supervised k-Determinantal Point
Processes},
booktitle = {{IEEE} International Conference on Big Data, BigData 2023, Sorrento,
Italy, December 15-18, 2023},
pages = {5260--5265},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/BigData59044.2023.10386642},
doi = {10.1109/BIGDATA59044.2023.10386642},
timestamp = {Fri, 02 Feb 2024 12:00:39 +0100},
biburl = {https://dblp.org/rec/conf/bigdataconf/JohanssonECS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GustafssonNQS21,
author = {Joel Gustafsson and
Peter Norberg and
Jan R. Qvick{-}Wester and
Alexander Schliep},
title = {Fast parallel construction of variable-length Markov chains},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {487},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04387-y},
doi = {10.1186/S12859-021-04387-Y},
timestamp = {Wed, 03 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GustafssonNQS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/TavaraS21,
author = {Shirin Tavara and
Alexander Schliep},
title = {Effects of network topology on the performance of consensus and distributed
learning of SVMs using {ADMM}},
journal = {PeerJ Comput. Sci.},
volume = {7},
pages = {e397},
year = {2021},
url = {https://doi.org/10.7717/peerj-cs.397},
doi = {10.7717/PEERJ-CS.397},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/peerj-cs/TavaraS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/TavaraSB21,
author = {Shirin Tavara and
Alexander Schliep and
Debabrota Basu},
editor = {Michael Kamp and
Irena Koprinska and
Adrien Bibal and
Tassadit Bouadi and
Beno{\^{\i}}t Fr{\'{e}}nay and
Luis Gal{\'{a}}rraga and
Jos{\'{e}} Oramas and
Linara Adilova and
Yamuna Krishnamurthy and
Bo Kang and
Christine Largeron and
Jefrey Lijffijt and
Tiphaine Viard and
Pascal Welke and
Massimiliano Ruocco and
Erlend Aune and
Claudio Gallicchio and
Gregor Schiele and
Franz Pernkopf and
Michaela Blott and
Holger Fr{\"{o}}ning and
G{\"{u}}nther Schindler and
Riccardo Guidotti and
Anna Monreale and
Salvatore Rinzivillo and
Przemyslaw Biecek and
Eirini Ntoutsi and
Mykola Pechenizkiy and
Bodo Rosenhahn and
Christopher L. Buckley and
Daniela Cialfi and
Pablo Lanillos and
Maxwell Ramstead and
Tim Verbelen and
Pedro M. Ferreira and
Giuseppina Andresini and
Donato Malerba and
Ib{\'{e}}ria Medeiros and
Philippe Fournier{-}Viger and
M. Saqib Nawaz and
Sebasti{\'{a}}n Ventura and
Meng Sun and
Min Zhou and
Valerio Bitetta and
Ilaria Bordino and
Andrea Ferretti and
Francesco Gullo and
Giovanni Ponti and
Lorenzo Severini and
Rita P. Ribeiro and
Jo{\~{a}}o Gama and
Ricard Gavald{\`{a}} and
Lee A. D. Cooper and
Naghmeh Ghazaleh and
Jonas Richiardi and
Damian Roqueiro and
Diego Saldana Miranda and
Konstantinos Sechidis and
Guilherme Gra{\c{c}}a},
title = {Federated Learning of Oligonucleotide Drug Molecule Thermodynamics
with Differentially Private ADMM-Based {SVM}},
booktitle = {Machine Learning and Principles and Practice of Knowledge Discovery
in Databases - International Workshops of {ECML} {PKDD} 2021, Virtual
Event, September 13-17, 2021, Proceedings, Part {II}},
series = {Communications in Computer and Information Science},
volume = {1525},
pages = {459--467},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-93733-1\_34},
doi = {10.1007/978-3-030-93733-1\_34},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pkdd/TavaraSB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jhir/MartinssonSEM20,
author = {John Martinsson and
Alexander Schliep and
Bj{\"{o}}rn Eliasson and
Olof Mogren},
title = {Blood Glucose Prediction with Variance Estimation Using Recurrent
Neural Networks},
journal = {J. Heal. Informatics Res.},
volume = {4},
number = {1},
pages = {1--18},
year = {2020},
url = {https://doi.org/10.1007/s41666-019-00059-y},
doi = {10.1007/S41666-019-00059-Y},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jhir/MartinssonSEM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/WiedenhoeftCKGS19,
author = {John Wiedenhoeft and
Alex Cagan and
Rimma Kozhemyakina and
Rimma Gulevich and
Alexander Schliep},
title = {Bayesian localization of {CNV} candidates in {WGS} data within minutes},
journal = {Algorithms Mol. Biol.},
volume = {14},
number = {1},
pages = {20:1--20:16},
year = {2019},
url = {https://doi.org/10.1186/s13015-019-0154-7},
doi = {10.1186/S13015-019-0154-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/WiedenhoeftCKGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ifip8-1/FigueroaSHCDNS19,
author = {Laiz Heckmann Barbalho de Figueroa and
Rema Salman and
Jennifer Horkoff and
Soni Chauhan and
Marcela Davila and
Francisco Gomes de Oliveira Neto and
Alexander Schliep},
editor = {Jaap Gordijn and
Wided Gu{\'{e}}dria and
Henderik A. Proper},
title = {A Modeling Approach for Bioinformatics Workflows},
booktitle = {The Practice of Enterprise Modeling - 12th {IFIP} Working Conference,
PoEM 2019, Luxembourg, Luxembourg, November 27-29, 2019, Proceedings},
series = {Lecture Notes in Business Information Processing},
volume = {369},
pages = {167--183},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-35151-9\_11},
doi = {10.1007/978-3-030-35151-9\_11},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ifip8-1/FigueroaSHCDNS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-00941,
author = {Andreas Ekstr{\"{o}}m and
Christian Forss{\'{e}}n and
Christos Dimitrakakis and
Devdatt P. Dubhashi and
H{\aa}kan T. Johansson and
Azam Sheikh Muhammad and
Hans Salomonsson and
Alexander Schliep},
title = {Bayesian optimization in ab initio nuclear physics},
journal = {CoRR},
volume = {abs/1902.00941},
year = {2019},
url = {http://arxiv.org/abs/1902.00941},
eprinttype = {arXiv},
eprint = {1902.00941},
timestamp = {Tue, 02 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-00941.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/MartinssonSEMPM18,
author = {John Martinsson and
Alexander Schliep and
Bj{\"{o}}rn Eliasson and
Christian Meijner and
Simon Persson and
Olof Mogren},
editor = {Kerstin Bach and
Razvan C. Bunescu and
Oladimeji Farri and
Aili Guo and
Sadid A. Hasan and
Zina M. Ibrahim and
Cindy Marling and
Jesse Raffa and
Jonathan Rubin and
Honghan Wu},
title = {Automatic Blood Glucose Prediction with Confidence Using Recurrent
Neural Networks},
booktitle = {Proceedings of the 3rd International Workshop on Knowledge Discovery
in Healthcare Data co-located with the 27th International Joint Conference
on Artificial Intelligence and the 23rd European Conference on Artificial
Intelligence {(IJCAI-ECAI} 2018), Stockholm, Schweden, July 13, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2148},
pages = {64--68},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2148/paper10.pdf},
timestamp = {Wed, 13 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/MartinssonSEMPM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itsc/ZecMS18,
author = {Edvin Listo Zec and
Nasser Mohammadiha and
Alexander Schliep},
editor = {Wei{-}Bin Zhang and
Alexandre M. Bayen and
Javier J. S{\'{a}}nchez Medina and
Matthew J. Barth},
title = {Statistical Sensor Modelling for Autonomous Driving Using Autoregressive
Input-Output HMMs},
booktitle = {21st International Conference on Intelligent Transportation Systems,
{ITSC} 2018, Maui, HI, USA, November 4-7, 2018},
pages = {1331--1336},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ITSC.2018.8569592},
doi = {10.1109/ITSC.2018.8569592},
timestamp = {Wed, 16 Oct 2019 14:14:57 +0200},
biburl = {https://dblp.org/rec/conf/itsc/ZecMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itsc/MartinssonMS18,
author = {John Martinsson and
Nasser Mohammadiha and
Alexander Schliep},
editor = {Wei{-}Bin Zhang and
Alexandre M. Bayen and
Javier J. S{\'{a}}nchez Medina and
Matthew J. Barth},
title = {Clustering Vehicle Maneuver Trajectories Using Mixtures of Hidden
Markov Models},
booktitle = {21st International Conference on Intelligent Transportation Systems,
{ITSC} 2018, Maui, HI, USA, November 4-7, 2018},
pages = {3698--3705},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ITSC.2018.8569418},
doi = {10.1109/ITSC.2018.8569418},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/itsc/MartinssonMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbac-pad/TavaraS18,
author = {Shirin Tavara and
Alexander Schliep},
title = {Effect of Network Topology on the Performance of ADMM-Based SVMs},
booktitle = {30th International Symposium on Computer Architecture and High Performance
Computing, {SBAC-PAD} 2018, Lyon, France, September 24-27, 2018},
pages = {388--393},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/CAHPC.2018.8645857},
doi = {10.1109/CAHPC.2018.8645857},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbac-pad/TavaraS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sofsem/DamaschkeS18,
author = {Peter Damaschke and
Alexander Schliep},
editor = {A Min Tjoa and
Ladjel Bellatreche and
Stefan Biffl and
Jan van Leeuwen and
Jir{\'{\i}} Wiedermann},
title = {An Optimization Problem Related to Bloom Filters with Bit Patterns},
booktitle = {{SOFSEM} 2018: Theory and Practice of Computer Science - 44th International
Conference on Current Trends in Theory and Practice of Computer Science,
Krems, Austria, January 29 - February 2, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10706},
pages = {525--538},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-73117-9\_37},
doi = {10.1007/978-3-319-73117-9\_37},
timestamp = {Sat, 30 Sep 2023 09:57:10 +0200},
biburl = {https://dblp.org/rec/conf/sofsem/DamaschkeS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LopesSC16,
author = {Ivani de Oliveira Negr{\~{a}}o Lopes and
Alexander Schliep and
Andr{\'{e}} Carlos Ponce de Leon Ferreira de Carvalho},
title = {Automatic learning of pre-miRNAs from different species},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {224},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1036-3},
doi = {10.1186/S12859-016-1036-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LopesSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WiedenhoeftBS16,
author = {John Wiedenhoeft and
Eric Brugel and
Alexander Schliep},
title = {Fast Bayesian Inference of Copy Number Variants using Hidden Markov
Models with Wavelet Compression},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {5},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004871},
doi = {10.1371/JOURNAL.PCBI.1004871},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WiedenhoeftBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WiedenhoeftBS16,
author = {John Wiedenhoeft and
Eric Brugel and
Alexander Schliep},
editor = {Mona Singh},
title = {Fast Bayesian Inference of Copy Number Variants Using Hidden Markov
Models with Wavelet Compression},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {263},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WiedenhoeftBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoyBS14,
author = {Rajat Shuvro Roy and
Debashish Bhattacharya and
Alexander Schliep},
title = {Turtle: Identifying frequent \emph{k}-mers with cache-efficient algorithms},
journal = {Bioinform.},
volume = {30},
number = {14},
pages = {1950--1957},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu132},
doi = {10.1093/BIOINFORMATICS/BTU132},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoyBS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LopesSC14,
author = {Ivani de Oliveira Negr{\~{a}}o Lopes and
Alexander Schliep and
Andr{\'{e}} Carlos Ponce de Leon Ferreira de Carvalho},
title = {The discriminant power of {RNA} features for pre-miRNA recognition},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {124},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-124},
doi = {10.1186/1471-2105-15-124},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LopesSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MahmudS14,
author = {Md Pavel Mahmud and
Alexander Schliep},
title = {TreQ-CG: Clustering Accelerates High-Throughput Sequencing Read Mapping},
journal = {CoRR},
volume = {abs/1404.2872},
year = {2014},
url = {http://arxiv.org/abs/1404.2872},
eprinttype = {arXiv},
eprint = {1404.2872},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MahmudS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1305-1861,
author = {Rajat Shuvro Roy and
Debashish Bhattacharya and
Alexander Schliep},
title = {Turtle: Identifying frequent k-mers with cache-efficient algorithms},
journal = {CoRR},
volume = {abs/1305.1861},
year = {2013},
url = {http://arxiv.org/abs/1305.1861},
eprinttype = {arXiv},
eprint = {1305.1861},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1305-1861.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MahmudWS12,
author = {Md Pavel Mahmud and
John Wiedenhoeft and
Alexander Schliep},
title = {Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious
\emph{kd}-trees},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {325--332},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts380},
doi = {10.1093/BIOINFORMATICS/BTS380},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MahmudWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarschallCCBKSS12,
author = {Tobias Marschall and
Ivan G. Costa and
Stefan Canzar and
Markus Bauer and
Gunnar W. Klau and
Alexander Schliep and
Alexander Sch{\"{o}}nhuth},
title = {{CLEVER:} clique-enumerating variant finder},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2875--2882},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts566},
doi = {10.1093/BIOINFORMATICS/BTS566},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarschallCCBKSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RoyCSS12,
author = {Rajat Shuvro Roy and
Kevin C. Chen and
Anirvan M. Sengupta and
Alexander Schliep},
title = {{SLIQ:} Simple Linear Inequalities for Efficient Contig Scaffolding},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1162--1175},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0263},
doi = {10.1089/CMB.2011.0263},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RoyCSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SchillingCS11,
author = {Ruben Schilling and
Ivan G. Costa and
Alexander Schliep},
title = {pGQL: {A} probabilistic graphical query language for gene expression
time courses},
journal = {BioData Min.},
volume = {4},
pages = {9},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-9},
doi = {10.1186/1756-0381-4-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SchillingCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafemeisterCSS11,
author = {Christoph Hafemeister and
Ivan G. Costa and
Alexander Sch{\"{o}}nhuth and
Alexander Schliep},
title = {Classifying short gene expression time-courses with Bayesian estimation
of piecewise constant functions},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {946--952},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr037},
doi = {10.1093/BIOINFORMATICS/BTR037},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HafemeisterCSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertSSG11,
author = {Michael Seifert and
Marc Strickert and
Alexander Schliep and
Ivo Grosse},
title = {Exploiting prior knowledge and gene distances in the analysis of tumor
expression profiles with extended Hidden Markov Models},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1645--1652},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr199},
doi = {10.1093/BIOINFORMATICS/BTR199},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertSSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MahmudS11,
author = {Md Pavel Mahmud and
Alexander Schliep},
title = {Fast {MCMC} Sampling for Hidden Markov Models to Determine Copy Number
Variations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {428},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-428},
doi = {10.1186/1471-2105-12-428},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MahmudS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HafemeisterKS11,
author = {Christoph Hafemeister and
Roland Krause and
Alexander Schliep},
title = {Selecting Oligonucleotide Probes for Whole-Genome Tiling Arrays with
a Cross-Hybridization Potential},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {8},
number = {6},
pages = {1642--1652},
year = {2011},
url = {https://doi.org/10.1109/TCBB.2011.39},
doi = {10.1109/TCBB.2011.39},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HafemeisterKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MahmudS11,
author = {Md Pavel Mahmud and
Alexander Schliep},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Speeding Up Bayesian {HMM} by the Four Russians Method},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {188--200},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_17},
doi = {10.1007/978-3-642-23038-7\_17},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MahmudS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1111-1426,
author = {Rajat Shuvro Roy and
Kevin C. Chen and
Anirvan M. Sengupta and
Alexander Schliep},
title = {{SLIQ:} Simple Linear Inequalities for Efficient Contig Scaffolding},
journal = {CoRR},
volume = {abs/1111.1426},
year = {2011},
url = {http://arxiv.org/abs/1111.1426},
eprinttype = {arXiv},
eprint = {1111.1426},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1111-1426.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeorgiCS10,
author = {Benjamin Georgi and
Ivan Gesteira Costa and
Alexander Schliep},
title = {PyMix - The Python mixture package - a tool for clustering of heterogeneous
biological data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {9},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-9},
doi = {10.1186/1471-2105-11-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GeorgiCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostaSHS09,
author = {Ivan G. Costa and
Alexander Sch{\"{o}}nhuth and
Christoph Hafemeister and
Alexander Schliep},
title = {Constrained mixture estimation for analysis and robust classification
of clinical time series},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp222},
doi = {10.1093/BIOINFORMATICS/BTP222},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CostaSHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SoutoCALS08,
author = {Marc{\'{\i}}lio Carlos Pereira de Souto and
Ivan G. Costa and
Daniel S. A. de Araujo and
Teresa Bernarda Ludermir and
Alexander Schliep},
title = {Clustering cancer gene expression data: a comparative study},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-497},
doi = {10.1186/1471-2105-9-497},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SoutoCALS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MaculaSBR08,
author = {Anthony J. Macula and
Alexander Schliep and
Morgan A. Bishop and
Thomas E. Renz},
title = {New, Improved, and Practical k-Stem Sequence Similarity Measures for
Probe Design},
journal = {J. Comput. Biol.},
volume = {15},
number = {5},
pages = {525--534},
year = {2008},
url = {https://doi.org/10.1089/cmb.2007.0208},
doi = {10.1089/CMB.2007.0208},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MaculaSBR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SchliepK08,
author = {Alexander Schliep and
Roland Krause},
title = {Efficient Algorithms for the Computational Design of Optimal Tiling
Arrays},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {5},
number = {4},
pages = {557--567},
year = {2008},
url = {https://doi.org/10.1109/TCBB.2008.50},
doi = {10.1109/TCBB.2008.50},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SchliepK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/SoutoACSLS08,
author = {Marc{\'{\i}}lio Carlos Pereira de Souto and
Daniel S. A. de Araujo and
Ivan G. Costa and
Rodrigo G. F. Soares and
Teresa Bernarda Ludermir and
Alexander Schliep},
title = {Comparative study on normalization procedures for cluster analysis
of gene expression datasets},
booktitle = {Proceedings of the International Joint Conference on Neural Networks,
{IJCNN} 2008, part of the {IEEE} World Congress on Computational Intelligence,
{WCCI} 2008, Hong Kong, China, June 1-6, 2008},
pages = {2792--2798},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IJCNN.2008.4634191},
doi = {10.1109/IJCNN.2008.4634191},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcnn/SoutoACSLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/SoutoPSACLS08,
author = {Marc{\'{\i}}lio Carlos Pereira de Souto and
Ricardo Bastos Cavalcante Prud{\^{e}}ncio and
Rodrigo G. F. Soares and
Daniel S. A. de Araujo and
Ivan G. Costa and
Teresa Bernarda Ludermir and
Alexander Schliep},
title = {Ranking and selecting clustering algorithms using a meta-learning
approach},
booktitle = {Proceedings of the International Joint Conference on Neural Networks,
{IJCNN} 2008, part of the {IEEE} World Congress on Computational Intelligence,
{WCCI} 2008, Hong Kong, China, June 1-6, 2008},
pages = {3729--3735},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IJCNN.2008.4634333},
doi = {10.1109/IJCNN.2008.4634333},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcnn/SoutoPSACLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CostaRHS08,
author = {Ivan G. Costa and
Stefan Roepcke and
Christoph Hafemeister and
Alexander Schliep},
title = {Inferring differentiation pathways from gene expression},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {156--164},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn153},
doi = {10.1093/BIOINFORMATICS/BTN153},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/CostaRHS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2008P8301,
editor = {Alexander Schliep and
Amin Shokrollahi and
Nicolas Thierry{-}Mieg},
title = {Group Testing in the Life Sciences, 20.07. - 25.07.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08301},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/portals/08301/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2008P8301.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/SchliepTS08,
author = {Alexander Schliep and
Nicolas Thierry{-}Mieg and
Amin Shokrollahi},
editor = {Alexander Schliep and
Amin Shokrollahi and
Nicolas Thierry{-}Mieg},
title = {08301 Final Report - Group Testing in the Life Sciences},
booktitle = {Group Testing in the Life Sciences, 20.07. - 25.07.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08301},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/opus/volltexte/2008/1780/},
timestamp = {Thu, 10 Jun 2021 13:02:10 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/SchliepTS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CostaKOS07,
author = {Ivan G. Costa and
Roland Krause and
Lennart Opitz and
Alexander Schliep},
title = {Semi-supervised learning for the identification of syn-expressed genes
from fused microarray and \emph{in situ }image data},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-10}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S10-S3},
doi = {10.1186/1471-2105-8-S10-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CostaKOS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RungsarityotinKSS07,
author = {Wasinee Rungsarityotin and
Roland Krause and
Arno Sch{\"{o}}dl and
Alexander Schliep},
title = {Identifying protein complexes directly from high-throughput {TAP}
data with Markov random fields},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-482},
doi = {10.1186/1471-2105-8-482},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RungsarityotinKSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/KlauRSVR07,
author = {Gunnar W. Klau and
Sven Rahmann and
Alexander Schliep and
Martin Vingron and
Knut Reinert},
title = {Integer linear programming approaches for non-unique probe selection},
journal = {Discret. Appl. Math.},
volume = {155},
number = {6-7},
pages = {840--856},
year = {2007},
url = {https://doi.org/10.1016/j.dam.2005.09.021},
doi = {10.1016/J.DAM.2005.09.021},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/KlauRSVR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gfkl/GeorgiSFS07,
author = {Benjamin Georgi and
M. Anne Spence and
Pamela Flodman and
Alexander Schliep},
editor = {Christine Preisach and
Hans Burkhardt and
Lars Schmidt{-}Thieme and
Reinhold Decker},
title = {Mixture Model Based Group Inference in Fused Genotype and Phenotype
Data},
booktitle = {Data Analysis, Machine Learning and Applications - Proceedings of
the 31st Annual Conference of the Gesellschaft f{\"{u}}r Klassifikation
e.V., Albert-Ludwigs-Universit{\"{a}}t Freiburg, March 7-9, 2007},
series = {Studies in Classification, Data Analysis, and Knowledge Organization},
pages = {119--126},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-78246-9\_15},
doi = {10.1007/978-3-540-78246-9\_15},
timestamp = {Fri, 25 Dec 2020 01:15:10 +0100},
biburl = {https://dblp.org/rec/conf/gfkl/GeorgiSFS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lwa/Schliep07,
author = {Alexander Schliep},
editor = {Alexander Hinneburg},
title = {Detecting functional modules from heterogenous mass data},
booktitle = {{LWA} 2007: Lernen - Wissen - Adaption, Halle, Deutschland, September
2007, Workshop Proceedings},
pages = {9},
publisher = {Martin-Luther-University Halle-Wittenberg},
year = {2007},
timestamp = {Thu, 05 Jul 2018 07:57:33 +0200},
biburl = {https://dblp.org/rec/conf/lwa/Schliep07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/GeorgiSS07,
author = {Benjamin Georgi and
J{\"{o}}rg Schultz and
Alexander Schliep},
editor = {Joost N. Kok and
Jacek Koronacki and
Ram{\'{o}}n L{\'{o}}pez de M{\'{a}}ntaras and
Stan Matwin and
Dunja Mladenic and
Andrzej Skowron},
title = {Context-Specific Independence Mixture Modelling for Protein Families},
booktitle = {Knowledge Discovery in Databases: {PKDD} 2007, 11th European Conference
on Principles and Practice of Knowledge Discovery in Databases, Warsaw,
Poland, September 17-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4702},
pages = {79--90},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74976-9\_11},
doi = {10.1007/978-3-540-74976-9\_11},
timestamp = {Tue, 14 May 2019 10:00:47 +0200},
biburl = {https://dblp.org/rec/conf/pkdd/GeorgiSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchliepK07,
author = {Alexander Schliep and
Roland Krause},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Efficient Computational Design of Tiling Arrays Using a Shortest Path
Approach},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {383--394},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_36},
doi = {10.1007/978-3-540-74126-8\_36},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchliepK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/CostaSS07,
author = {Ivan G. Costa and
Marc{\'{\i}}lio Carlos Pereira de Souto and
Alexander Schliep},
editor = {Marie{-}France Sagot and
Maria Em{\'{\i}}lia Telles Walter},
title = {Validating Gene Clusterings by Selecting Informative Gene Ontology
Terms with Mutual Information},
booktitle = {Advances in Bioinformatics and Computational Biology, Second Brazilian
Symposium on Bioinformatics, {BSB} 2007, Angra dos Reis, Brazil, August
29-31, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4643},
pages = {81--92},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73731-5\_8},
doi = {10.1007/978-3-540-73731-5\_8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wob/CostaSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2007,
editor = {Claudia Falter and
Alexander Schliep and
Joachim Selbig and
Martin Vingron and
Dirk Walther},
title = {Proceedings of the German Conference on Bioinformatics, {GCB} 2007,
September 26-28, 2007, Potsdam, Germany},
series = {{LNI}},
volume = {{P-115}},
publisher = {{GI}},
year = {2007},
url = {https://dl.gi.de/handle/20.500.12116/22357},
isbn = {978-3-88579-209-3},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gfkl/OpitzSP06,
author = {Lennart Opitz and
Alexander Schliep and
Stefan Posch},
editor = {Reinhold Decker and
Hans{-}Joachim Lenz},
title = {Joint Analysis of In-situ Hybridization and Gene Expression Data},
booktitle = {Advances in Data Analysis, Proceedings of the 30th Annual Conference
of the Gesellschaft f{\"{u}}r Klassifikation e.V., Freie Universit{\"{a}}t
Berlin, March 8-10, 2006},
series = {Studies in Classification, Data Analysis, and Knowledge Organization},
pages = {577--584},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-70981-7\_66},
doi = {10.1007/978-3-540-70981-7\_66},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gfkl/OpitzSP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GeorgiS06,
author = {Benjamin Georgi and
Alexander Schliep},
title = {Context-specific independence mixture modeling for positional weight
matrices},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {166--173},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl249},
doi = {10.1093/BIOINFORMATICS/BTL249},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/GeorgiS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SchliepR06,
author = {Alexander Schliep and
Sven Rahmann},
title = {Decoding non-unique oligonucleotide hybridization experiments of targets
related by a phylogenetic tree},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {424--430},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl254},
doi = {10.1093/BIOINFORMATICS/BTL254},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/SchliepR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostaSS05,
author = {Ivan G. Costa and
Alexander Sch{\"{o}}nhuth and
Alexander Schliep},
title = {The Graphical Query Language: a tool for analysis of gene expression
time-courses},
journal = {Bioinform.},
volume = {21},
number = {10},
pages = {2544--2545},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti311},
doi = {10.1093/BIOINFORMATICS/BTI311},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CostaSS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SchliepCSS05,
author = {Alexander Schliep and
Ivan G. Costa and
Christine Steinhoff and
Alexander Sch{\"{o}}nhuth},
title = {Analyzing Gene Expression Time-Courses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {2},
number = {3},
pages = {179--193},
year = {2005},
url = {https://doi.org/10.1109/TCBB.2005.31},
doi = {10.1109/TCBB.2005.31},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SchliepCSS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gfkl/WeberRS05,
author = {Marcus Weber and
Wasinee Rungsarityotin and
Alexander Schliep},
editor = {Myra Spiliopoulou and
Rudolf Kruse and
Christian Borgelt and
Andreas N{\"{u}}rnberger and
Wolfgang Gaul},
title = {An Indicator for the Number of Clusters: Using a Linear Map to Simplex
Structure},
booktitle = {From Data and Information Analysis to Knowledge Engineering, Proceedings
of the 29th Annual Conference of the Gesellschaft f{\"{u}}r Klassifikation
e.V., University of Magdeburg, March 9-11, 2005},
series = {Studies in Classification, Data Analysis, and Knowledge Organization},
pages = {103--110},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/3-540-31314-1\_11},
doi = {10.1007/3-540-31314-1\_11},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gfkl/WeberRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gfkl/CostaS05,
author = {Ivan G. Costa and
Alexander Schliep},
editor = {Myra Spiliopoulou and
Rudolf Kruse and
Christian Borgelt and
Andreas N{\"{u}}rnberger and
Wolfgang Gaul},
title = {On External Indices for Mixtures: Validating Mixtures of Genes},
booktitle = {From Data and Information Analysis to Knowledge Engineering, Proceedings
of the 29th Annual Conference of the Gesellschaft f{\"{u}}r Klassifikation
e.V., University of Magdeburg, March 9-11, 2005},
series = {Studies in Classification, Data Analysis, and Knowledge Organization},
pages = {662--669},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/3-540-31314-1\_81},
doi = {10.1007/3-540-31314-1\_81},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gfkl/CostaS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KlauRSVR04,
author = {Gunnar W. Klau and
Sven Rahmann and
Alexander Schliep and
Martin Vingron and
Knut Reinert},
title = {Optimal robust non-unique probe selection using Integer Linear Programming},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {186--193},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth936},
doi = {10.1093/BIOINFORMATICS/BTH936},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/KlauRSVR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SchliepSS04,
author = {Alexander Schliep and
Christine Steinhoff and
Alexander Sch{\"{o}}nhuth},
title = {Robust inference of groups in gene expression time-courses using mixtures
of HMMs},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {283--289},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth937},
doi = {10.1093/BIOINFORMATICS/BTH937},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/SchliepSS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/SchliepTR03,
author = {Alexander Schliep and
David C. Torney and
Sven Rahmann},
title = {Group Testing With {DNA} Chips: Generating Designs and Decoding Experiments},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {84--93},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227307},
doi = {10.1109/CSB.2003.1227307},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/SchliepTR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SchliepSS03,
author = {Alexander Schliep and
Alexander Sch{\"{o}}nhuth and
Christine Steinhoff},
title = {Using hidden Markov models to analyze gene expression time course
data},
booktitle = {Proceedings of the Eleventh International Conference on Intelligent
Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia},
pages = {255--263},
year = {2003},
url = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i255?etoc},
timestamp = {Tue, 15 Jul 2003 14:30:05 +0200},
biburl = {https://dblp.org/rec/conf/ismb/SchliepSS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaderaliS02,
author = {Lars Kaderali and
Alexander Schliep},
title = {Selecting signature oligonucleotides to identify organisms using {DNA}
arrays},
journal = {Bioinform.},
volume = {18},
number = {10},
pages = {1340--1349},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.10.1340},
doi = {10.1093/BIOINFORMATICS/18.10.1340},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaderaliS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/PipenbacherSSSSS02,
author = {P. Pipenbacher and
Alexander Schliep and
Sebastian Schneckener and
Alexander Sch{\"{o}}nhuth and
Dietmar Schomburg and
Rainer Schrader},
title = {ProClust: improved clustering of protein sequences with an extended
graph-based approach},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2002), October 6-9, 2002, Saarbr{\"{u}}cken, Germany},
pages = {182--191},
year = {2002},
timestamp = {Thu, 23 Jun 2016 15:53:27 +0200},
biburl = {https://dblp.org/rec/conf/eccb/PipenbacherSSSSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoltenSSSS01,
author = {Eva Bolten and
Alexander Schliep and
Sebastian Schneckener and
Dietmar Schomburg and
Rainer Schrader},
title = {Clustering protein sequences-structure prediction by transitive homology},
journal = {Bioinform.},
volume = {17},
number = {10},
pages = {935--941},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.10.935},
doi = {10.1093/BIOINFORMATICS/17.10.935},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoltenSSSS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/endm/BoltenSSSS01,
author = {Eva Bolten and
Alexander Schliep and
Sebastian Schneckener and
Dietmar Schomburg and
Rainer Schrader},
title = {Strongly Connected Components can Predict Protein Structure},
journal = {Electron. Notes Discret. Math.},
volume = {8},
pages = {10--13},
year = {2001},
url = {https://doi.org/10.1016/S1571-0653(05)80066-6},
doi = {10.1016/S1571-0653(05)80066-6},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/endm/BoltenSSSS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/endm/KaderaliS01,
author = {Lars Kaderali and
Alexander Schliep},
title = {A new Algorithm for Accelerating Pair-Wise Computations of Melting
Temperature},
journal = {Electron. Notes Discret. Math.},
volume = {8},
pages = {46--49},
year = {2001},
url = {https://doi.org/10.1016/S1571-0653(05)80076-9},
doi = {10.1016/S1571-0653(05)80076-9},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/endm/KaderaliS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BoltenSSSS99,
author = {Eva Bolten and
Alexander Schliep and
Sebastian Schneckener and
Dietmar Schomburg and
Rainer Schrader},
title = {Clustering Protein Sequences ? Structure Prediction by Transitive
Homology},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {181},
year = {1999},
timestamp = {Fri, 02 Aug 2019 15:48:16 +0200},
biburl = {https://dblp.org/rec/conf/gcb/BoltenSSSS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/Schliep99,
author = {Alexander Schliep},
title = {Learning Hidden Markov Model Topology},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {225--226},
year = {1999},
timestamp = {Fri, 02 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/Schliep99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/DoggettLST98,
author = {Norman A. Doggett and
Jonathan Longmire and
Alexander Schliep and
David C. Torney},
title = {Screening large clone libraries efficiently},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
University of Cologne, Germany, October 1998},
publisher = {Oxford University Press},
year = {1998},
timestamp = {Fri, 02 Aug 2019 15:48:14 +0200},
biburl = {https://dblp.org/rec/conf/gcb/DoggettLST98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KnillST96,
author = {Emanuel Knill and
Alexander Schliep and
David C. Torney},
title = {Interpretation of Pooling Experiments Using the Markov Chain Monte
Carlo Method},
journal = {J. Comput. Biol.},
volume = {3},
number = {3},
pages = {395--406},
year = {1996},
url = {https://doi.org/10.1089/cmb.1996.3.395},
doi = {10.1089/CMB.1996.3.395},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KnillST96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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