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ORCIDBibTeX records: Kengo Sato
@article{DBLP:journals/bib/SatoH23,
author = {Kengo Sato and
Michiaki Hamada},
title = {Recent trends in {RNA} informatics: a review of machine learning and
deep learning for {RNA} secondary structure prediction and {RNA} drug
discovery},
journal = {Briefings Bioinform.},
volume = {24},
number = {4},
year = {2023},
url = {https://doi.org/10.1093/bib/bbad186},
doi = {10.1093/BIB/BBAD186},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SatoH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SatoK22,
author = {Kengo Sato and
Yuki Kato},
title = {Prediction of {RNA} secondary structure including pseudoknots for
long sequences},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab395},
doi = {10.1093/BIB/BBAB395},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SatoK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NishiyamaST22,
author = {Soichiro Nishiyama and
Kengo Sato and
Ryutaro Tao},
title = {Integer programming for selecting set of informative markers in paternity
inference},
journal = {{BMC} Bioinform.},
volume = {23},
number = {1},
pages = {265},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-04801-z},
doi = {10.1186/S12859-022-04801-Z},
timestamp = {Thu, 28 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NishiyamaST22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/siggrapha/SatoTNW22,
author = {Kengo Sato and
Hiroki Terashima and
Shin'ya Nishida and
Yoshihiro Watanabe},
editor = {Soon Ki Jung and
Hye Yeon Nam and
Daniel Saakes},
title = {{E.S.P.:} Extra-Sensory Puck in Air Hockey using the Projection-Based
Illusion},
booktitle = {{SIGGRAPH} Asia 2022 Emerging Technologies, Daegu, Republic of Korea,
December 6-9, 2022},
pages = {3:1--3:2},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3550471.3558397},
doi = {10.1145/3550471.3558397},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/siggrapha/SatoTNW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/InubushiIMFSIYS21,
author = {Tomoo Inubushi and
Masanori Ito and
Yutaro Mori and
Masami Futatsubashi and
Kengo Sato and
Shigeru Ito and
Masamichi Yokokura and
Tomomi Shinke and
Yosuke Kameno and
Akihiro Kakimoto and
Toshihiko Kanno and
Hiroyuki Okada and
Yasuomi Ouchi and
Etsuji Yoshikawa},
title = {Neural correlates of head restraint: Unsolicited neuronal activation
and dopamine release},
journal = {NeuroImage},
volume = {224},
pages = {117434},
year = {2021},
url = {https://doi.org/10.1016/j.neuroimage.2020.117434},
doi = {10.1016/J.NEUROIMAGE.2020.117434},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/InubushiIMFSIYS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HiroharaSKSS18,
author = {Maya Hirohara and
Yutaka Saito and
Yuki Koda and
Kengo Sato and
Yasubumi Sakakibara},
title = {Convolutional neural network based on {SMILES} representation of compounds
for detecting chemical motif},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {19},
pages = {83--94},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2523-5},
doi = {10.1186/S12859-018-2523-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HiroharaSKSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LiNZSWYZZK18,
author = {Jinyan Li and
Kenta Nakai and
Yun Zheng and
Kengo Sato and
Limsoon Wong},
title = {Introduction to Selected Papers from {GIW2018}},
journal = {J. Bioinform. Comput. Biol.},
volume = {16},
number = {6},
pages = {1802005:1--1802005:2},
year = {2018},
url = {https://doi.org/10.1142/S0219720018020055},
doi = {10.1142/S0219720018020055},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LiNZSWYZZK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/AkiyamaSS18,
author = {Manato Akiyama and
Kengo Sato and
Yasubumi Sakakibara},
title = {A max-margin training of {RNA} secondary structure prediction integrated
with the thermodynamic model},
journal = {J. Bioinform. Comput. Biol.},
volume = {16},
number = {6},
pages = {1840025:1--1840025:15},
year = {2018},
url = {https://doi.org/10.1142/S0219720018400255},
doi = {10.1142/S0219720018400255},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/AkiyamaSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KatoMSMHA17,
author = {Yuki Kato and
Tomoya Mori and
Kengo Sato and
Shingo Maegawa and
Hiroshi Hosokawa and
Tatsuya Akutsu},
title = {An accessibility-incorporated method for accurate prediction of {RNA-RNA}
interactions from sequence data},
journal = {Bioinform.},
volume = {33},
number = {2},
pages = {202--209},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw603},
doi = {10.1093/BIOINFORMATICS/BTW603},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KatoMSMHA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsuchiyaAASHSS16,
author = {Mariko Tsuchiya and
Kojiro Amano and
Masaya Abe and
Misato Seki and
Sumitaka Hase and
Kengo Sato and
Yasubumi Sakakibara},
title = {{SHARAKU:} an algorithm for aligning and clustering read mapping profiles
of deep sequencing in non-coding {RNA} processing},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {369--377},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw273},
doi = {10.1093/BIOINFORMATICS/BTW273},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsuchiyaAASHSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HamadaOKSKFMA16,
author = {Michiaki Hamada and
Yukiteru Ono and
Hisanori Kiryu and
Kengo Sato and
Yuki Kato and
Tsukasa Fukunaga and
Ryota Mori and
Kiyoshi Asai},
title = {Rtools: a web server for various secondary structural analyses on
single {RNA} sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W302--W307},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw337},
doi = {10.1093/NAR/GKW337},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HamadaOKSKFMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KumozakiSS15,
author = {Shotaro Kumozaki and
Kengo Sato and
Yasubumi Sakakibara},
title = {A Machine Learning Based Approach to de novo Sequencing of Glycans
from Tandem Mass Spectrometry Spectrum},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {12},
number = {6},
pages = {1267--1274},
year = {2015},
url = {https://doi.org/10.1109/TCBB.2015.2430317},
doi = {10.1109/TCBB.2015.2430317},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KumozakiSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcce/TokimotoSSY13,
author = {Toyotaro Tokimoto and
Kengo Sato and
Shiro Suyama and
Hirotsugu Yamamoto},
title = {High-frame-rate {LED} display with pulse-width modulation by use of
nonlinear clock},
booktitle = {{IEEE} 2nd Global Conference on Consumer Electronics, {GCCE} 2013,
Tokyo, Japan, 1-4 October 2013},
pages = {83--84},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/GCCE.2013.6664933},
doi = {10.1109/GCCE.2013.6664933},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/gcce/TokimotoSSY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakakibaraHUNSYNPKS12,
author = {Yasubumi Sakakibara and
Tsuyoshi Hachiya and
Miho Uchida and
Nobuyoshi Nagamine and
Yohei Sugawara and
Masahiro Yokota and
Masaomi Nakamura and
Kris Popendorf and
Takashi Komori and
Kengo Sato},
title = {{COPICAT:} a software system for predicting interactions between proteins
and chemical compounds},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {745--746},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts031},
doi = {10.1093/BIOINFORMATICS/BTS031},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SakakibaraHUNSYNPKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SatoKAAS12,
author = {Kengo Sato and
Yuki Kato and
Tatsuya Akutsu and
Kiyoshi Asai and
Yasubumi Sakakibara},
title = {{DAFS:} simultaneous aligning and folding of {RNA} sequences via dual
decomposition},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3218--3224},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts612},
doi = {10.1093/BIOINFORMATICS/BTS612},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SatoKAAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NakamuraHSSS12,
author = {Masaomi Nakamura and
Tsuyoshi Hachiya and
Yutaka Saito and
Kengo Sato and
Yasubumi Sakakibara},
title = {An efficient algorithm for de novo predictions of biochemical pathways
between chemical compounds},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-17}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S17-S8},
doi = {10.1186/1471-2105-13-S17-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NakamuraHSSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KatoSAA12,
author = {Yuki Kato and
Kengo Sato and
Kiyoshi Asai and
Tatsuya Akutsu},
title = {Rtips: fast and accurate tools for {RNA} 2D structure prediction using
integer programming},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {29--34},
year = {2012},
url = {https://doi.org/10.1093/nar/gks412},
doi = {10.1093/NAR/GKS412},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KatoSAA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/WatanabeSIWSH12,
author = {Takuya Watanabe and
Kengo Sato and
Fumiko Itoh and
Kohei Wakabayashi and
Masayoshi Shichiri and
Tsutomu Hirano},
title = {Endogenous Bioactive Peptides as Potential Biomarkers for Atherosclerotic
Coronary Heart Disease},
journal = {Sensors},
volume = {12},
number = {4},
pages = {4974--4985},
year = {2012},
url = {https://doi.org/10.3390/s120404974},
doi = {10.3390/S120404974},
timestamp = {Fri, 31 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sensors/WatanabeSIWSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SatoKHAA11,
author = {Kengo Sato and
Yuki Kato and
Michiaki Hamada and
Tatsuya Akutsu and
Kiyoshi Asai},
title = {IPknot: fast and accurate prediction of {RNA} secondary structures
with pseudoknots using integer programming},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {85--93},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr215},
doi = {10.1093/BIOINFORMATICS/BTR215},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SatoKHAA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaitoSS11,
author = {Yutaka Saito and
Kengo Sato and
Yasubumi Sakakibara},
title = {Fast and accurate clustering of noncoding RNAs using ensembles of
sequence alignments and secondary structures},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S48},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S48},
doi = {10.1186/1471-2105-12-S1-S48},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaitoSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/PoolsapKSA11,
author = {Unyanee Poolsap and
Yuki Kato and
Kengo Sato and
Tatsuya Akutsu},
title = {Using binding Profiles to Predict binding sites of Target RNAs},
journal = {J. Bioinform. Comput. Biol.},
volume = {9},
number = {6},
pages = {697--713},
year = {2011},
url = {https://doi.org/10.1142/S0219720011005628},
doi = {10.1142/S0219720011005628},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/PoolsapKSA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HamadaSA11,
author = {Michiaki Hamada and
Kengo Sato and
Kiyoshi Asai},
title = {Improving the accuracy of predicting secondary structure for aligned
{RNA} sequences},
journal = {Nucleic Acids Res.},
volume = {39},
number = {2},
pages = {393--402},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq792},
doi = {10.1093/NAR/GKQ792},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HamadaSA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HamadaYSFA11,
author = {Michiaki Hamada and
Koichiro Yamada and
Kengo Sato and
Martin C. Frith and
Kiyoshi Asai},
title = {CentroidHomfold-LAST: accurate prediction of {RNA} secondary structure
using automatically collected homologous sequences},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Web-Server-Issue},
pages = {100--106},
year = {2011},
url = {https://doi.org/10.1093/nar/gkr290},
doi = {10.1093/NAR/GKR290},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HamadaYSFA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KatoSHWAA10,
author = {Yuki Kato and
Kengo Sato and
Michiaki Hamada and
Yoshihide Watanabe and
Kiyoshi Asai and
Tatsuya Akutsu},
title = {RactIP: fast and accurate prediction of {RNA-RNA} interaction using
integer programming},
journal = {Bioinform.},
volume = {26},
number = {18},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq372},
doi = {10.1093/BIOINFORMATICS/BTQ372},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KatoSHWAA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HamadaSA10,
author = {Michiaki Hamada and
Kengo Sato and
Kiyoshi Asai},
title = {Prediction of {RNA} secondary structure by maximizing pseudo-expected
accuracy},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {586},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-586},
doi = {10.1186/1471-2105-11-586},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HamadaSA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaitoSS10,
author = {Yutaka Saito and
Kengo Sato and
Yasubumi Sakakibara},
title = {Robust and accurate prediction of noncoding RNAs from aligned sequences},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-7}},
pages = {S3},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S7-S3},
doi = {10.1186/1471-2105-11-S7-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaitoSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SatoHMAS10,
author = {Kengo Sato and
Michiaki Hamada and
Toutai Mituyama and
Kiyoshi Asai and
Yasubumi Sakakibara},
title = {A Non-Parametric Bayesian Approach for Predicting {RNA} Secondary
Structures},
journal = {J. Bioinform. Comput. Biol.},
volume = {8},
number = {4},
pages = {727--742},
year = {2010},
url = {https://doi.org/10.1142/S0219720010004926},
doi = {10.1142/S0219720010004926},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/SatoHMAS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/SatoWBH10,
author = {Kengo Sato and
Tom Whitington and
Timothy L. Bailey and
Paul Horton},
title = {Improved prediction of transcription binding sites from chromatin
modification data},
booktitle = {Proceedings of the 2010 {IEEE} Symposium on Computational Intelligence
in Bioinformatics and Computational Biology, {CIBCB} 2010, Montreal,
QC, Canada, May 2-5, 2010},
pages = {1--7},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/CIBCB.2010.5510323},
doi = {10.1109/CIBCB.2010.5510323},
timestamp = {Wed, 16 Oct 2019 14:14:48 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/SatoWBH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/OkadaSS10,
author = {Yohei Okada and
Kengo Sato and
Yasubumi Sakakibara},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Improvement of Structure Conservation Index with Centroid Estimators},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {88--97},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/okada.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/OkadaSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaKSMA09,
author = {Michiaki Hamada and
Hisanori Kiryu and
Kengo Sato and
Toutai Mituyama and
Kiyoshi Asai},
title = {Prediction of {RNA} secondary structure using generalized centroid
estimators},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {465--473},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn601},
doi = {10.1093/BIOINFORMATICS/BTN601},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaKSMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaSKMA09,
author = {Michiaki Hamada and
Kengo Sato and
Hisanori Kiryu and
Toutai Mituyama and
Kiyoshi Asai},
title = {Predictions of {RNA} secondary structure by combining homologous sequence
information},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp228},
doi = {10.1093/BIOINFORMATICS/BTP228},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaSKMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaSKMA09a,
author = {Michiaki Hamada and
Kengo Sato and
Hisanori Kiryu and
Toutai Mituyama and
Kiyoshi Asai},
title = {CentroidAlign: fast and accurate aligner for structured RNAs by maximizing
expected sum-of-pairs score},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3236--3243},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp580},
doi = {10.1093/BIOINFORMATICS/BTP580},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaSKMA09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SatoHAM09,
author = {Kengo Sato and
Michiaki Hamada and
Kiyoshi Asai and
Toutai Mituyama},
title = {{CENTROIDFOLD:} a web server for {RNA} secondary structure prediction},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {277--280},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp367},
doi = {10.1093/NAR/GKP367},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SatoHAM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/SakakibaraS09,
author = {Yasubumi Sakakibara and
Kengo Sato},
editor = {Anne Condon and
David Harel and
Joost N. Kok and
Arto Salomaa and
Erik Winfree},
title = {Sequence and Structural Analyses for Functional Non-coding RNAs},
booktitle = {Algorithmic Bioprocesses},
series = {Natural Computing Series},
pages = {63--79},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-540-88869-7\_5},
doi = {10.1007/978-3-540-88869-7\_5},
timestamp = {Sun, 25 Jul 2021 11:52:09 +0200},
biburl = {https://dblp.org/rec/conf/birthday/SakakibaraS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SatoHMAS09,
author = {Kengo Sato and
Michiaki Hamada and
Toutai Mituyama and
Kiyoshi Asai and
Yasubumi Sakakibara},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Non-parametric Bayesian Approach for Predicting {RNA} Secondary
Structures},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {286--297},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_24},
doi = {10.1007/978-3-642-04241-6\_24},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SatoHMAS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SatoMAS08,
author = {Kengo Sato and
Toutai Mituyama and
Kiyoshi Asai and
Yasubumi Sakakibara},
title = {Directed acyclic graph kernels for structural {RNA} analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-318},
doi = {10.1186/1471-2105-9-318},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SatoMAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AsaiKHTSMSTM08,
author = {Kiyoshi Asai and
Hisanori Kiryu and
Michiaki Hamada and
Yasuo Tabei and
Kengo Sato and
Hiroshi Matsui and
Yasubumi Sakakibara and
Goro Terai and
Toutai Mituyama},
title = {Software.ncrna.org: web servers for analyses of {RNA} sequences},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {75--78},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn222},
doi = {10.1093/NAR/GKN222},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AsaiKHTSMSTM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SakakibaraPOAS07,
author = {Yasubumi Sakakibara and
Kris Popendorf and
Nana Ogawa and
Kiyoshi Asai and
Kengo Sato},
title = {Stem Kernels for {RNA} Sequence Analyses},
journal = {J. Bioinform. Comput. Biol.},
volume = {5},
number = {5},
pages = {1103--1122},
year = {2007},
url = {https://doi.org/10.1142/S0219720007003028},
doi = {10.1142/S0219720007003028},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/SakakibaraPOAS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SakakibaraAS07,
author = {Yasubumi Sakakibara and
Kiyoshi Asai and
Kengo Sato},
editor = {Sepp Hochreiter and
Roland Wagner},
title = {Stem Kernels for {RNA} Sequence Analyses},
booktitle = {Bioinformatics Research and Development, First International Conference,
{BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4414},
pages = {278--291},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71233-6\_22},
doi = {10.1007/978-3-540-71233-6\_22},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/bird/SakakibaraAS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icgi/2006,
editor = {Yasubumi Sakakibara and
Satoshi Kobayashi and
Kengo Sato and
Tetsuro Nishino and
Etsuji Tomita},
title = {Grammatical Inference: Algorithms and Applications, 8th International
Colloquium, {ICGI} 2006, Tokyo, Japan, September 20-22, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4201},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11872436},
doi = {10.1007/11872436},
isbn = {3-540-45264-8},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icgi/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatsuiSS05,
author = {Hiroshi Matsui and
Kengo Sato and
Yasubumi Sakakibara},
title = {Pair stochastic tree adjoining grammars for aligning and predicting
pseudoknot {RNA} structures},
journal = {Bioinform.},
volume = {21},
number = {11},
pages = {2611--2617},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti385},
doi = {10.1093/BIOINFORMATICS/BTI385},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatsuiSS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/SatoS05,
author = {Kengo Sato and
Yasubumi Sakakibara},
title = {{RNA} secondary structural alignment with conditional random fields},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {242},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1139},
doi = {10.1093/BIOINFORMATICS/BTI1139},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/SatoS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/MatsuiSS04,
author = {Hiroshi Matsui and
Kengo Sato and
Yasubumi Sakakibara},
title = {Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting
Pseudoknot {RNA} Structures},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {290--299},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332442},
doi = {10.1109/CSB.2004.1332442},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/MatsuiSS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-iwp/OkamotoSS03,
author = {Hiroyuki Okamoto and
Kengo Sato and
Hiroaki Saito},
title = {Preferential Presentation of Japanese Near-synonyms using Definition
Statements},
booktitle = {Proceedings of the Second International Workshop on Paraphrasing,
IWP@ACL 2003, Sapporo, Japan, July 11, 2003},
pages = {17--24},
year = {2003},
url = {https://aclanthology.org/W03-1603/},
doi = {10.3115/1118984.1118987},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-iwp/OkamotoSS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coling/SatoS02,
author = {Kengo Sato and
Hiroaki Saito},
title = {Extracting Word Sequence Correspondences with Support Vector Machines},
booktitle = {19th International Conference on Computational Linguistics, {COLING}
2002, Howard International House and Academia Sinica, Taipei, Taiwan,
August 24 - September 1, 2002},
year = {2002},
url = {https://aclanthology.org/C02-1020/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/coling/SatoS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/SatoN98,
author = {Kengo Sato and
Masakazu Nakanishi},
editor = {Christian Boitet and
Pete Whitelock},
title = {Maximum Entropy Model Learning of the Translation Rules},
booktitle = {36th Annual Meeting of the Association for Computational Linguistics
and 17th International Conference on Computational Linguistics, {COLING-ACL}
'98, August 10-14, 1998, Universit{\'{e}} de Montr{\'{e}}al,
Montr{\'{e}}al, Quebec, Canada. Proceedings of the Conference},
pages = {1171--1175},
publisher = {Morgan Kaufmann Publishers / {ACL}},
year = {1998},
url = {https://aclanthology.org/P98-2191/},
doi = {10.3115/980691.980760},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/SatoN98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coling/NobesawaTJSSN96,
author = {Shiho Nobesawa and
Junya Tsutsumi and
Sun Da Jiang and
Tomohisa Sano and
Kengo Sato and
Masakazu Nakanishi},
title = {Segmenting Sentences into Linky Strings Using D-bigram Statistics},
booktitle = {16th International Conference on Computational Linguistics, Proceedings
of the Conference, {COLING} 1996, Center for Sprogteknologi, Copenhagen,
Denmark, August 5-9, 1996},
pages = {586--591},
year = {1996},
url = {https://aclanthology.org/C96-2099/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/coling/NobesawaTJSSN96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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