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BibTeX records: Sven Sahle
@article{DBLP:journals/ploscb/MaierASMKDBBK22, author = {Benjamin D. Maier and Luis U. Aguilera and Sven Sahle and Pascal Mutz and Priyata Kalra and Christopher D{\"{a}}chert and Ralf Bartenschlager and Marco Binder and Ursula Kummer}, title = {Stochastic dynamics of Type-I interferon responses}, journal = {PLoS Comput. Biol.}, volume = {18}, number = {10}, pages = {1010623}, year = {2022}, url = {https://doi.org/10.1371/journal.pcbi.1010623}, doi = {10.1371/JOURNAL.PCBI.1010623}, timestamp = {Wed, 17 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/MaierASMKDBBK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SchmiesterSBCDE21, author = {Leonard Schmiester and Yannik Sch{\"{a}}lte and Frank T. Bergmann and Tacio Camba and Erika Dudkin and Janine Egert and Fabian Fr{\"{o}}hlich and Lara Fuhrmann and Adrian L. Hauber and Svenja Kemmer and Polina A. Lakrisenko and Carolin Loos and Simon Merkt and Wolfgang M{\"{u}}ller and Dilan Pathirana and Elba Raim{\'{u}}ndez{-}{\'{A}}lvarez and Lukas Refisch and Marcus Rosenblatt and Paul Stapor and Philipp St{\"{a}}dter and Dantong Wang and Franz{-}Georg Wieland and Julio R. Banga and Jens Timmer and Alejandro F. Villaverde and Sven Sahle and Clemens Kreutz and Jan Hasenauer and Daniel Weindl}, title = {PEtab - Interoperable specification of parameter estimation problems in systems biology}, journal = {PLoS Comput. Biol.}, volume = {17}, number = {1}, year = {2021}, url = {https://doi.org/10.1371/journal.pcbi.1008646}, doi = {10.1371/JOURNAL.PCBI.1008646}, timestamp = {Wed, 07 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SchmiesterSBCDE21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/HuckaBCDHKKNMOS19, author = {Michael Hucka and Frank T. Bergmann and Claudine Chaouiya and Andreas Dr{\"{a}}ger and Stefan Hoops and Sarah M. Keating and Matthias K{\"{o}}nig and Nicolas Le Nov{\`{e}}re and Chris J. Myers and Brett G. Olivier and Sven Sahle and James C. Schaff and Rahuman S. Malik{-}Sheriff and Lucian P. Smith and Dagmar Waltemath and Darren J. Wilkinson and Fengkai Zhang}, title = {The Systems Biology Markup Language {(SBML):} Language Specification for Level 3 Version 2 Core Release 2}, journal = {J. Integr. Bioinform.}, volume = {16}, number = {2}, year = {2019}, url = {https://doi.org/10.1515/jib-2019-0021}, doi = {10.1515/JIB-2019-0021}, timestamp = {Fri, 14 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/HuckaBCDHKKNMOS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/BergmannCKMNNOS18, author = {Frank T. Bergmann and Jonathan Cooper and Matthias K{\"{o}}nig and Ion I. Moraru and David P. Nickerson and Nicolas Le Nov{\`{e}}re and Brett G. Olivier and Sven Sahle and Lucian P. Smith and Dagmar Waltemath}, title = {Simulation Experiment Description Markup Language {(SED-ML)} Level 1 Version 3 {(L1V3)}}, journal = {J. Integr. Bioinform.}, volume = {15}, number = {1}, year = {2018}, url = {https://doi.org/10.1515/jib-2017-0086}, doi = {10.1515/JIB-2017-0086}, timestamp = {Fri, 14 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/BergmannCKMNNOS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/BergmannKGSW18, author = {Frank T. Bergmann and Sarah M. Keating and Ralph Gauges and Sven Sahle and Katja Wengler}, title = {{SBML} Level 3 package: Render, Version 1, Release 1}, journal = {J. Integr. Bioinform.}, volume = {15}, number = {1}, year = {2018}, url = {https://doi.org/10.1515/jib-2017-0078}, doi = {10.1515/JIB-2017-0078}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/BergmannKGSW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/HuckaBDHKNMOSSS18, author = {Michael Hucka and Frank T. Bergmann and Andreas Dr{\"{a}}ger and Stefan Hoops and Sarah M. Keating and Nicolas Le Nov{\`{e}}re and Chris J. Myers and Brett G. Olivier and Sven Sahle and James C. Schaff and Lucian P. Smith and Dagmar Waltemath and Darren J. Wilkinson}, title = {The Systems Biology Markup Language {(SBML):} Language Specification for Level 3 Version 1 Core}, journal = {J. Integr. Bioinform.}, volume = {15}, number = {1}, year = {2018}, url = {https://doi.org/10.1515/jib-2017-0080}, doi = {10.1515/JIB-2017-0080}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/HuckaBDHKNMOSSS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/HuckaBDHKNMOSSS18a, author = {Michael Hucka and Frank T. Bergmann and Andreas Dr{\"{a}}ger and Stefan Hoops and Sarah M. Keating and Nicolas Le Nov{\`{e}}re and Chris J. Myers and Brett G. Olivier and Sven Sahle and James C. Schaff and Lucian P. Smith and Dagmar Waltemath and Darren J. Wilkinson}, title = {The Systems Biology Markup Language {(SBML):} Language Specification for Level 3 Version 2 Core}, journal = {J. Integr. Bioinform.}, volume = {15}, number = {1}, year = {2018}, url = {https://doi.org/10.1515/jib-2017-0081}, doi = {10.1515/JIB-2017-0081}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/HuckaBDHKNMOSSS18a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BergmannSZ16, author = {Frank T. Bergmann and Sven Sahle and Christoph Zimmer}, title = {Piecewise parameter estimation for stochastic models in {COPASI}}, journal = {Bioinform.}, volume = {32}, number = {10}, pages = {1586--1588}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btv759}, doi = {10.1093/BIOINFORMATICS/BTV759}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BergmannSZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/ZimmerS16, author = {Christoph Zimmer and Sven Sahle}, title = {Comparison of approaches for parameter estimation on stochastic models: Generic least squares versus specialized approaches}, journal = {Comput. Biol. Chem.}, volume = {61}, pages = {75--85}, year = {2016}, url = {https://doi.org/10.1016/j.compbiolchem.2015.10.003}, doi = {10.1016/J.COMPBIOLCHEM.2015.10.003}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/candc/ZimmerS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/ZimmerBS16, author = {Christoph Zimmer and Frank T. Bergmann and Sven Sahle}, title = {Reducing local minima in fitness landscapes of parameter estimation by using piecewise evaluation and state estimation}, journal = {CoRR}, volume = {abs/1601.04458}, year = {2016}, url = {http://arxiv.org/abs/1601.04458}, eprinttype = {arXiv}, eprint = {1601.04458}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/ZimmerBS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biosystems/ZimmerS15, author = {Christoph Zimmer and Sven Sahle}, title = {A termination criterion for parameter estimation in stochastic models in systems biology}, journal = {Biosyst.}, volume = {137}, pages = {55--63}, year = {2015}, url = {https://doi.org/10.1016/j.biosystems.2015.08.003}, doi = {10.1016/J.BIOSYSTEMS.2015.08.003}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biosystems/ZimmerS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/GaugesRSWB15, author = {Ralph Gauges and Ursula Rost and Sven Sahle and Katja Wengler and Frank Thomas Bergmann}, title = {The Systems Biology Markup Language {(SBML)} Level 3 Package: Layout, Version 1 Core}, journal = {J. Integr. Bioinform.}, volume = {12}, number = {2}, year = {2015}, url = {https://doi.org/10.2390/biecoll-jib-2015-267}, doi = {10.2390/BIECOLL-JIB-2015-267}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/GaugesRSWB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/HuckaBDHKNMOSSS15, author = {Michael Hucka and Frank T. Bergmann and Andreas Dr{\"{a}}ger and Stefan Hoops and Sarah M. Keating and Nicolas Le Nov{\`{e}}re and Chris J. Myers and Brett G. Olivier and Sven Sahle and James C. Schaff and Lucian P. Smith and Dagmar Waltemath and Darren J. Wilkinson}, title = {Systems Biology Markup Language {(SBML)} Level 2 Version 5: Structures and Facilities for Model Definitions}, journal = {J. Integr. Bioinform.}, volume = {12}, number = {2}, year = {2015}, url = {https://doi.org/10.2390/biecoll-jib-2015-271}, doi = {10.2390/BIECOLL-JIB-2015-271}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/HuckaBDHKNMOSSS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/HuckaBHKSSSW15, author = {Michael Hucka and Frank T. Bergmann and Stefan Hoops and Sarah M. Keating and Sven Sahle and James C. Schaff and Lucian P. Smith and Darren J. Wilkinson}, title = {The Systems Biology Markup Language {(SBML):} Language Specification for Level 3 Version 1 Core}, journal = {J. Integr. Bioinform.}, volume = {12}, number = {2}, year = {2015}, url = {https://doi.org/10.2390/biecoll-jib-2015-266}, doi = {10.2390/BIECOLL-JIB-2015-266}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/HuckaBHKSSSW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SurovtsovaSHSK12, author = {Irina Surovtsova and Natalia Simus and Katrin H{\"{u}}bner and Sven Sahle and Ursula Kummer}, title = {Simplification of biochemical models: a general approach based on the analysis of the impact of individual species and reactions on the systems dynamics}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {14}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-14}, doi = {10.1186/1752-0509-6-14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SurovtsovaSHSK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WaltemathABHKMMNSSN11, author = {Dagmar Waltemath and Richard R. Adams and Frank T. Bergmann and Michael Hucka and Fedor A. Kolpakov and Andrew K. Miller and Ion I. Moraru and David P. Nickerson and Sven Sahle and Jacky L. Snoep and Nicolas Le Nov{\`{e}}re}, title = {Reproducible computational biology experiments with {SED-ML} - The Simulation Experiment Description Markup Language}, journal = {{BMC} Syst. Biol.}, volume = {5}, pages = {198}, year = {2011}, url = {https://doi.org/10.1186/1752-0509-5-198}, doi = {10.1186/1752-0509-5-198}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WaltemathABHKMMNSSN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WaltemathABBBBCCCCGHHHKLMMNNNSSSSTWN11, author = {Dagmar Waltemath and Richard R. Adams and Daniel A. Beard and Frank T. Bergmann and Upinder S. Bhalla and Randall Britten and Vijayalakshmi Chelliah and Mike T. Cooling and Jonathan Cooper and Edmund J. Crampin and Alan Garny and Stefan Hoops and Michael Hucka and Peter J. Hunter and Edda Klipp and Camille Laibe and Andrew K. Miller and Ion I. Moraru and David P. Nickerson and Poul M. F. Nielsen and Macha Nikolski and Sven Sahle and Herbert M. Sauro and Henning Schmidt and Jacky L. Snoep and Dominic P. Tolle and Olaf Wolkenhauer and Nicolas Le Nov{\`{e}}re}, title = {Minimum Information About a Simulation Experiment {(MIASE)}}, journal = {PLoS Comput. Biol.}, volume = {7}, number = {4}, year = {2011}, url = {https://doi.org/10.1371/journal.pcbi.1001122}, doi = {10.1371/JOURNAL.PCBI.1001122}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/WaltemathABBBBCCCCGHHHKLMMNNNSSSSTWN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SurovtsovaSLKSK09, author = {Irina Surovtsova and Natalia Simus and Thomas Lorenz and Artjom K{\"{o}}nig and Sven Sahle and Ursula Kummer}, title = {Accessible methods for the dynamic time-scale decomposition of biochemical systems}, journal = {Bioinform.}, volume = {25}, number = {21}, pages = {2816--2823}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btp451}, doi = {10.1093/BIOINFORMATICS/BTP451}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SurovtsovaSLKSK09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WeidemannRSSGGSSBRWK08, author = {Andreas Weidemann and Stefan Richter and Matthias Stein and Sven Sahle and Ralph Gauges and Razif R. Gabdoulline and Irina Surovtsova and Nils Semmelrock and Bruno Besson and Isabel Rojas and Rebecca C. Wade and Ursula Kummer}, title = {{SYCAMORE} - a systems biology computational analysis and modeling research environment}, journal = {Bioinform.}, volume = {24}, number = {12}, pages = {1463--1464}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn207}, doi = {10.1093/BIOINFORMATICS/BTN207}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WeidemannRSSGGSSBRWK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GaugesRSW06, author = {Ralph Gauges and Ursula Rost and Sven Sahle and Katja Wegner}, title = {A model diagram layout extension for {SBML}}, journal = {Bioinform.}, volume = {22}, number = {15}, pages = {1879--1885}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btl195}, doi = {10.1093/BIOINFORMATICS/BTL195}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GaugesRSW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HoopsSGLPSSXMK06, author = {Stefan Hoops and Sven Sahle and Ralph Gauges and Christine Lee and J{\"{u}}rgen Pahle and Natalia Simus and Mudita Singhal and Liang Xu and Pedro Mendes and Ursula Kummer}, title = {{COPASI} - a COmplex PAthway SImulator}, journal = {Bioinform.}, volume = {22}, number = {24}, pages = {3067--3074}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btl485}, doi = {10.1093/BIOINFORMATICS/BTL485}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HoopsSGLPSSXMK06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wsc/SurovtsovaSPK06, author = {Irina Surovtsova and Sven Sahle and J{\"{u}}rgen Pahle and Ursula Kummer}, editor = {L. Felipe Perrone and Barry Lawson and Jason Liu and Frederick P. Wieland}, title = {Approaches to complexity reduction in a systems biology research environment {(SYCAMORE)}}, booktitle = {Proceedings of the Winter Simulation Conference {WSC} 2006, Monterey, California, USA, December 3-6, 2006}, pages = {1683--1689}, publisher = {{IEEE} Computer Society}, year = {2006}, url = {https://doi.org/10.1109/WSC.2006.322943}, doi = {10.1109/WSC.2006.322943}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wsc/SurovtsovaSPK06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wsc/SahleGPSKHLSXM06, author = {Sven Sahle and Ralph Gauges and J{\"{u}}rgen Pahle and Natalia Simus and Ursula Kummer and Stefan Hoops and Christine Lee and Mudita Singhal and Liang Xu and Pedro Mendes}, editor = {L. Felipe Perrone and Barry Lawson and Jason Liu and Frederick P. Wieland}, title = {Simulation of biochemical networks using {COPASI:} a complex pathway simulator}, booktitle = {Proceedings of the Winter Simulation Conference {WSC} 2006, Monterey, California, USA, December 3-6, 2006}, pages = {1698--1706}, publisher = {{IEEE} Computer Society}, year = {2006}, url = {https://doi.org/10.1109/WSC.2006.322945}, doi = {10.1109/WSC.2006.322945}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wsc/SahleGPSKHLSXM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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